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Aim: To determine the effect of sub state concentration on α –amylase by Shoffer-Somogyi method.
Principle: With a fixed concentration of enzyme an increase of substrate will result at first in a very rapid rise
in velocity or reaction sate. As the substrate concentration continues to increase, however the increase in sate of
reaction begins to slow down until, with a large substrate concentration, no further change in velocity is
observed.
Michealis and others reasoned correctly that an enzyme catalyzed reaction at varying sub state concentrations is
diphasic i.e. at low substrate concentration the active sites on molecules (enzyme) are not saturated by substrate
and the enzyme rate varies with substrate molecules concentration (phase1). As the number of substrate
molecules increases, the sites are covered to a greater degree until at saturation no more rites are available, the
enzyme is working at full capacity and now the rate is independent of substrate concentration. (Phase II).
Procedure: Pipette out the Enzyme and substrate as shown in tabular column. Incubate exactly for 3 minutes
and follow the Shoffer – Somogyi method. Plot the graph of substrate concentration against Enzyme activity.
Conclusion: As the substrate concentration increases, the activity increases. However after certain
concentration of substrate, the activity remains same because of saturation of Active site on Enzyme with
substrate Molecules.
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4
5
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2
Principle:
Procedure:
Pipette out 0.5ml of enzyme & 0.5ml of substrate at room temperature into different test tubes. Incubate all test
tubes in room temperature exactly for 3 minutes stop the reaction at end of 30sec., 1, 1½, 2, 21/2, 3 minutes by
adding 1ml of DNS reagent. Then keep the tubes in boiling water bath exactly for 5 minutes and coll. Add 8ml
of water O.D. is read at 540nm after adjusting calorimeter with blank. Calculate the activity at different time
intervals. Plot the curve taking time on the absicca and activity on ordinate. Comment on your results.
Reagents:
1) DNS Reagent: -
1 gm of 3,5 dinitro salicylic acid in 200ml of NaOH. Add to 50ml of water. Add the suspension carefully to
50ml of water containing 30gms of sodium potassium tartarate and made upto 100ml. Filter if necessary.
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4
5
6
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Result:
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DETERMINATION OF KM OF α -AMYLASE
Aim: To determine the Km & Vmax of α -amylase by Benfeld and titration method.
Principle: the concentration of substrate affects the rate of enzyme-catalyzed reaction. After a certain
concentration, a point is reached finally where the Enzyme is saturated with the substrate. When the substrate
concentration has no influence on the rate of formation of products. Km is the Michealis Menten constant is it
is the substrate concentration that gives the half of Maximum velocity. Which is calculated from graph by
plotting 1/V agains 1/S.
There fore
The kinetic constants Km & V are must conveniently determined from a linear transformation of the Michealis
equation, obtained by taking reciprocals.
A plot of 1/v against 1/s therefore gives a strait line of slope Km/V. The reciprocals of the kinetic constants can
then be determined from the intercepts in the axis, since when
The graph of 1/V against 1/S is known as line weaver-Burk plot and is the method frequently used to calculate
Km.
Procedure:
Pipette out enzyme, substrate, Buffer as shown on tabular column. Incubate for 3 minutes and cease the
reaction by adding 5ml of SSR reagent. Heat in boiling water bath for 15 minutes and cool. Add 1ml of
NH2So4 and titrate against sodium thio sulphate solution. Note down the reading. Calculate the activity and
Km from graph.
4
Reagents:
1) DNS Reagent:
1 gm of 3,5 dinitro salicylic acid in 200ml of NaOH. Add to 50ml of water. Add the suspension carefully to
50ml of water containing 30gms sodium potassium tartarate and made upto 1000ml. Filter if necessary.
LAB-REPORT:
Determinat
ion of Km Subs- O.D. µ g Km
Buffer Enzyme DNS H2O V 1/V
Incubate for 3 minutes minutuuuru
ml ml ml ml M/L M/L
Method ml nm Maltose graph
No.
1 0 1 - 1 8 -
2 0.1 0.4 0.5 1 8 1000
3 0.15 0.35 0.5 1 8 1400
4 0.2 0.3 0.5 1 8 1400
5 0.25 0.25 0.5 1 8 1560
6 0.3 0.2 0.5 1 8 1680
7 0.35 0.15 0.5 1 8 1760
8 0.4 0.1 0.5 1 8 1760
9 0.45 0.05 0.5 1 8 1840
10 0.5 0 0.5 1 8 1760
Calculation of Activity:
Enzyme unit: 1 Enzyme unit is defined as µ g of Maltose liberated per ml per minute.
342 x 3
= 1000 x 2 x 1000
342x3
V = 1949.31.
5
Results:
LAB – REPORT
µ g
Sub- 0.1N Burette Reading
Sl. Buffer Enzyme SSR of V 1/V S 1/s
strate H2So4 Differ-
No ml ml ml mal- M/L M/L M/L M/L
ml ml I F ence tose
ml ml ml
1 0 1 - 5 1 0
Heat in BWB for 15 min. & cool
Result:
Vmax
0.5ml of enzyme in 3minutes liberate say 140 g of Maltose. Therefore 1ml of enzyme in 3minutes liberates
140x2 = 280 g Maltose.
6
∴ 1ml enzyme in 3 minute liberates 280.
∴ 1ml enzyme in 1minute = 280 = 93.3µ g.
3
V = 27:19 moles.
1% of starch is used.
For test tube No.2.
We have 0.1ml of substrate used.
∴ 1gm = 100ml of phosphate buffer.
1000mg = 100ml
∴ 10mg = 1ml
1mg = 0.1ml
We want for 0.5ml.
∴ 1mg – 1ml
100ml
0.5x10-5
DETERMINATION OF KI OF α -AMYLASE
Principle: In the presence of an inhibitor, the Michealis & Menton equation is altered as shown below, where
‘i’ is the concentration of inhibitor and Ki the inhibition constant.
7
No Inhibitor V = V
1+(km/s)
S (1 + i/Ki)
Non-competitive inhibitor V = V
(1 + Km/s) (1 + i/Ki)
No inhibitor 1 = 1 =Km 1
V V V S
A Graph of (1/V) against (1/S) can be used to determine Ki and the type of inhibition. A competitive inhibitor
alters km and how competitive inhibitor cases change in V.
i.e. Kx = Km (1 + i/Ki)
Vx = V
(1 + i/Ki)
V and Km are determined in the absence of an inhibitor and I is known. Therefore Ki can be reading
calculated.
Procedure: -
Pipette out Substrate, Enzyme, and Buffer as shown in tabular column. Incubate for 3 minutes
exactly and cease the reaction by adding 5ml of SSR reagent. Heat the tubes in boiling water bath
for 15 minutes and cool. Add 1ml of H2SO4 (0.1N) and titrate against standard sodium thio
sulphate. Note down the reading. Calculate 1g of Maltose liberated, activity (V), 1/V, S, 1/S. Plot
the graph of 1/V against 1/S and calculate the Km & Vmax from graph. This is the standard graph.
C) Effect of Inhibitors: -
8
Repeat the above experiment, but this time incorporate 0.1ml of the inhibitor into the reaction
mixture, again adjusting the value of buffer to give a final reaction volume of 10ml. Repeat the
experiment with 0.4 & 0.6ml of inhibitor by adjusting the volume of buffer. Calculate 1/V & 1/S.
Plot the graph of 1/V against concentration of salicylic acid. Calculate the Ki from graph.
Reagents: -
1) DNS Reagent: -
1 gm of 3,5 dinitro salicylic acid in 200ml of NaOH. Add to 50ml of water. Add the suspension
carefully to 50ml of water containing 30gms of sodium potassium tartarate and made upto 100ml.
Filter of necessary.
2) Phosphate buffer of pH 6.9.
3) Enzyme: 25mg in 10ml of buffer.
4) Substrate: 1% Starch in 100ml Buffer.
5) Salicylic acid: Stock – 10mM.
Above solution is diluted to 0.1mM. 0.4mM, 0.6mM.
Lab-Report
Km
Sl. Substrate Buffer Enzyme DNS Water O.D. Mg of V 1/v
S 1/S From
No. ml ml ml ml ml 540nm Maltose M/L M/L
graph
Incubate for 3 minutes
1 0 1 - 1 8 -
2 0.1 0.4 0.5 1 8 520
3 0.15 0.35 0.5 1 8 1060
4 0.2 0.3 0.5 1 8 1300
5 0.25 0.25 0.5 1 8 1580
6 0.3 0.2 0.5 1 8 2080
7 0.35 0.15 0.5 1 8 2480
8 0.4 0.1 0.5 1 8 2800
9 0.45 0.05 0.5 1 8 3160
10 0.5 0 0.5 1 8 3580
Lab-Report.
9
Burette Reading µ g
Sub- Enzy- 0.1N V
Sl. Buffer SSR of 1/V S 1/s
strate me H2So4 Diffe- M/
No. ml ml mal- M/L M/L M/L
ml ml ml I F rence L
tose
ml ml ml
Lab-Report
0.1 O.D.
Subs Enzy µ g
Sl. Buffer mM DNS Water 540nm V 1/V S 1/s
trate -me of
No. ml I ml ml M/L M/L M/L M/L
ml ml maltose
ml
1 0 0.5 0.1 0.5 1 7.9 0
2 0.1 0.4 0.1 0.5 1 7.9 740
Heat in BWB for 5 min. & cool
Lab-Report:
0.4 O.D.
Subs Enzy- µ g
Sl. Buffer mM DNS Water 540nm V 1/V S 1/s
trate me of
No. ml I ml ml M/L M/L M/L M/L
ml ml maltose
ml
1 0 0.5 0.4 0.5 1 7.6
-
Lab-Report:
0.6 O.D.
Subs Enzy- µ g
Sl. Buffer mM DNS Water 540nm V 1/V S 1/s
trate me of
No. ml I ml ml M/L M/L M/L M/L
ml ml maltose
ml
1 0 0.5 0.6 0.5 1 7.4 -
Heat in BWB for 5 min. & cool
Results: -
11
1. From nature of graph salicylic acid is Non-competitive Inhibitor.
2. Ki from intercept = 0.33.
Procedure:
Pipette out 0.5ml of substrate and 0.5ml of enzyme at different temperatures as shown in tabular
column. Incubate exactly for 3 minutes; cease the reaction by addition of 1ml of DNS reagent. Read
the absorbance at 540nm and calculate the activity. Plot the graph of activity against temperature.
Connects:
1. The enzyme shows maximum activity at 40c.
2. Thermal Denaturation of enzyme takes place after 40c and hence decreases in activity.
Reagents:
1) DNS Reagent:
1gm of 3,5 dinitro salicylic acid in 200ml of NaoH. Add to 50ml water. Add the suspension carefully
to 50ml water containing 30gms of sodium potassium tartarate and make upto 100ml. filter if necessary.
Lab Report:
Activity
Sl. Different Substrate Enzyme DNS Water O.D. µ g of
µ Moles/m
No. Temperature ml ml ml ml 540nm Maltose
l
12
1 1
Control 0.5 0.5 8 0
minutes
20 0.5 0.5 8 960
5 1
30 (RT) 0.5 0.5 8 1120
6 1
40 0.5 0.5 8 1240
7 1
50 0.5 0.5 8 1200
8 1
60 0.5 0.5 8 1100
Calculation of Activity:
A= µ g of Maltose x ml
342 x 3
A= 480 x 2
1026
= 0.93 µ Moles/ml/minute.
Effect of pH on α -Amylase:
Principle:
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Since enzymes are proteins, pH changes will profoundly affect the ionic character of the amino and
carboxylic acid groups on the protein and will therefore markedly affect the catalytic site and
confirmation of an enzyme. Enzymes are active over a limited pH range only and a plot of activity
against pH usually gives a bell shaped curve. The pH value of Maximum activity s known as the
optimum pH and this is a characteristic of the enzyme, provided that the enzyme is stable under the
conditions studied. The variation of activity with pH is due to change in the state of ionization of the
enzyme protein and other components of reaction mixture.
Procedure:
Pipette out 0.5ml of substrate, 0.5ml of enzyme at different pH range as shown in tabular column.
Incubate exactly for 3 minutes and cease the reaction by DNS reagent. Read the absorbance at 540 nm.
Calculate the Activity plot the graph of pH against activity.
Comments:
Reagents:
1) DNS reagent:
1gm of 3,5 dinitro salicylic acid in 200ml of NaoH. Add to 50ml water. Add the suspension carefully
to 50ml of water containing 30gms of sodium potassium tartarate and made upto 100ml. Filter of
necessary.
2) Phosphate Buffer:
Prepare phosphate buffer of pH range 4.5, 5,6,6,5,7,7.5 by mixing 0.2m NaoH and 0.2m sodium
dihydrogen phosphate. Standardize the pH to of required.
Activity
Sl. PH Substrate Buffer Enzyme DNS Water O.D. µ g of
µ moles/ml/mi
No. Range ml ml ml ml ml 540nm Maltose
n
14
1 1 -
0.5 - 1 7 0.0 -
C 4.5 1 360
0.5 0.5 1 7 0.09 0.70
T
2
Procedure: Pipette out 0.5ml of substrate, 0.5ml of Buffer, 0.5ml of enzyme. Introduce varying
concentration of NaCl (1mM, 2mM, 4mM, 8mM, 10mM) into the reaction mixture. Incubate exactly for
3 minutes and cease the reaction by addition of 1ml of DNS reagent. Measure the absorbance at 540nm.
Calculate the activity. Plot the graph of activity versus concentration of NaCl.
Comments:
1) The activity of enzyme decreases as the concentration of NaCl is increased due to
precipitation of protein.
Reagents:
1) DNS reagent:
1gm of 3,5 dinitro salicylic acid in 200ml of NaOH. Add to 50ml water. Carefully trans for the
suspension to 50ml water containing 30gms of sodium potassium tartarate and make up the volume to
1000ml. Filter if necessary.
Lab-Report
Principle: Urea is denaturing agent. At high concentration of urea, the protein is denatured and the
activity of enzyme is reduced and the activity is completely lost.
Procedure: Pipette out 0.5ml substrate, 0.5ml enzyme and incorporate the varying concentration of
urea into the reaction mixture as shown in tabular column. Cease the reaction after incubation for
exactly 3minutes and read the absorbance at 540nm. Measure the O>D. at 540nm. Calculate activity.
Plot the activity against concentration of urea.
Comments:
1) The protein is denatured at high concentration of urea and the activity is lost.
Reagents:
1) DNS reagent:
1gm of 3,5 dinitro salicylic acid is dissolved in 200ml of NaOH. 50ml of water is added. The
suspension is carefully transformed into 50ml water containing 30gms of sodium potassium tartarate.
Make up the volume to 1000ml. Filter if necessary.
2) Phosphate Buffer:
Prepare 0.2M Sodium hydroxide & 0.2M Sodium dihydrogen phosphates. Add 24ml of 0.2M NaOH to
50ml of sodium dihydrogen phosphate and make up the volume to 100ml. Standardize the solution to
pH 6.9.
Lab-Report:
17
Sl. Substrate Enzyme Urea DNS Water O>D. G of V
NO. ml ml ml ml ml 540nm Maltose Moles/ml/min
0
1 0
0.5 - 1 10 0 0
1.5
Procedure:
Prepare the enzyme extract from young tendrils of papain using phosphate buffer. Pipette out 0.2, 0.3,
0.5ml of enzyme. Make the volume to 1ml with phosphate buffer and Incubate at 37°C for 5minutes.
Add 1mlof 1% casein, shake and incubate for 20minutes. Add 3ml of 5% TCA solution. After 1 hour
centrifuge and test for supernatant for Tyrosine. This is unknown and carryout FCR method for 5 test
tubes.
Pipette out standard Tyrosine of 0.1m 0.2, 0.5, 0.4, 0.5, 0.6 & 0.7ml of Tyrosine and make up the
volume upto 1ml with water. Add 5ml of alkaline copper reagent and incubate for 20minutes. Add
0.5ml of FCR reagent and read the absorbance at 660nm. Calculate the concentration and plot the
concentration against absorbance.
Take 0.5ml of enzyme extract; make up the volume to 1ml with water. Add 5ml alkaline copper reagent
and incubate for 20minutes. Add 0.5ml of FCR reagent and read the absorbance at 660nm. Calculate
the amount of Tyrosine liberated and calculate the enzyme activity.
1 unit of Enzyme activity is defined as amount, which releases 10µ g of Tyrosine equivalent per hour
under the conditions of assay.
18
Reference:
1) Arman CR. 1970, Methods in Enzymology, Ed. Pelman Landel. Academic press, P-228-229
Reagents:
1) 1% Casein:
1gm of casein was suspended in 80ml of phosphate Buffer (0.1M) pH 7.6 and completely dissolved by
heating in boiling water bath for 15minutes. This brings about complete solution of casein. This
solution was cooled and made to 100ml with buffer and stored in fridge when not in use. Prior to use
casein solution was kept in hot water bath for atleast 5 minutes.
Prepare 43ml of 0.1M NaOH to 50ml of 0.1M sodium dihydrogen phosphates and dilute to 100ml.
Standardize the solution by adjusting to pH 7.6.
3) 5% TCA solution.
4) Enzyme extract:
Some 4-5 tendril papain leaves are crashed using water and extract with phosphate buffer of pH 7.6.
Filtered and used as papain solution.
Lab-Repot:
PART – A
1 0 1 1 3
After 1 hour
Centrifuge
20minutes
2 0.2 0.8 1 3
And test for
supernatant
3 0.3 0.7 1 3
for Tyrosine
4 0.5 0.5 1 3
PART – B
Lab-Report:
PART - C
Alkaline Concentration
Enzyme O.D. V
Sl. Water Cu FCR Mean Of ((g)
Extract at µ g/ml
No. ml Reagent ml OD. Unknown
ml 660nm /hour
ml 1year
minutesIncubate Fro 20
minutesIncubate for 20
- 1 5 0.5 -
I - -
0.5 0.5 5 0.5 0.225
II 25 375
0.5 0.5 5 0.5 -
0.5 0.5 5 0.5 0.275
III 28 277.2
0.5 0.5 5 0.5
0.5 0.5 5 0.5 0.405
IV 46 276.0
0.5 0.5 5 0.5
Calculation of Activity
10 x Incubation time
= 250 x 5 x 60
10 x20
20
= 375 µ mol/ml/hour.
V = 280 x 5 x 60
10 x 20
= 277.2 µ mol/ml/hour.
21
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Principle: Alkaline Phosphatases (E.C. No. 3:1:3:1) is found in bone, kidney, liver and intestine and
acts on phosphoric esters with the liberation of inorganic phosphate.
When p-nitryl phenyl is used as substrate, p-nitrophenol and inorganic phosphates are liberated. The p-
nitrophenol is yellow in colour in alkaline condition and with absorbance at 405nm.
Units:
1 unit of enzyme activity is defined as moles of p-nitro phenol liberated per ml per minutes.
Procedure:
To a clean dry test tube add substrate and enzyme as shown in tabular column. Keep the tubes in water
bath at 37°C for 3-5 minutes. Then add enzyme and incubate exactly for 10minutes. Stop the reaction
by adding 5ml of NaOH. Shake well and read the absorbance at 405nm. Find the amount of PNP
liberated from standard graph and calculate activity.
Reagent:
2) Substrate:
P-nitro phenyl phosphate – 5mM/litre in Buffer.
3) P-Nitro Phenol: 69.9 mg of PNP in 100ml 0.02M NaOH. Dilute 1ml of above solution in Buffer.
4) 0.02N NaOH.
5) Enzyme:
Lab-Report:
1 0.1 0.9 5
0.2
2 0.1 0.7 5
57 142.5
0.2
3 0.1 0.7 5
Calculation of Activity:
10
∴ Enzyme activity per minute = 285 = 142.5 µ mol/gm wheat.
Result:
Reagent:
Principle:
Lipase hydrolyses the fats into Mono glycerides, diglycerides and free fatty acids and glycerol. After
complete hydrolysis all fatty acids are liberated. The free fatty acid liberated are measured either by
titration is decreasing pH. Fats are emulsified before they are acted upon by Lipase.
Procedure:
Pipette out exactly 2.5ml of buffer into a conical flask containing 5ml of substrate. Keep the flask in
thermostat at 35°c for 5minutes. Add 2ml of enzyme solution. Shake well and incubate for 1Hcur at
37°C. After incubation add 5ml of Ethyl alcohol and ether 5ml to stop the reaction. Add a drop of
indicator and titrate against 0.1N NaOH.
Reagents:
1) 0.1N NaOH.
2) Phenophalean Indicator.
3) 0.1N Acetate Buffer of pH 5:
Place 32ml of 0.1N mol/litre acetic acid in a 100ml vol. flask and make upto the mark with 0.1N
mol/litre sodium acetate.
4) Substrate:
Dissolve 2gm of Gum acasia in 80ml of water. Ad 100mg of cholate or tauro cholate. Stirr well. Add
10ml of groundnut oil. Homogenies for 2minutes. Make the volume to 100ml with distill water.
5) Enzyme Extract:
10gms of castor seeds are homogenized with 20ml of ice cold Acetone. The suspension is filtered
quickly and residue is washed with acetone, acetone ether (1:1) and ether respectively. The air-dried
powder now called the acetone dry powder is used as source of enzyme. Suspend 2gm of acetone
powder in 20ml buffer for 120-15min and centrifuge. Supernatant is used source of enzyme. In
similion way enzyme extract is prepared for flesh castor seed, green almond, dry almond.
25
Lab-Report:
Observations
Enzyme:
1litre inoculation
1 27 5 - 5 5 4.2
0.6 300
2 26 5 1 5 5 4.2
26