CTA Case No. 8545 January 28, 2016 The Court has jurisdiction to rule on the issue of disallowed rental income still pending appeal with the Office of the President Taxpayer is a BOI-registered enterprise enjoying Income Tax Holiday (ITH) benefit pursuant to its BOI Certificate of Registration. The BOI approved taxpayers application for ITH, which covers its income tax exemption in its 2008 ITR. However, BOI disallowed taxpayers rental income holding that it did not arise from taxpayers registered activity. BIR assessed the taxpayer for deficiency income tax which included tax on said disallowed income. Taxpayer appealed BOIs decision with the Office of the President. On the question of whether the Court has jurisdiction to rule on the issue of disallowed rental income pending appeal with the Office of the President, the Court, citing Sections 4 and 228 of the NIRC and Sections 7 and 11 of RA No. 1125, as amended, held that it has exclusive appellate jurisdiction to review by appeal the decision of respondent involving, inter alia, disputed assessments. In addition, the case may proceed independently of the appeal of the subject BOI decision. This must be so because while the subject assessment and the assailed FDDA were influenced by the BOl's treatment or decision as regards the disallowed rental income, that does not change the fact that the said FDDA, which is one decided by respondent as the Commissioner of Internal Revenue by virtue of her power to decide disputed assessments under Section 4 of the NIRC of 1997, is still the subject matter of this appeal, to which this Court has exclusive appellate jurisdiction under the aforecited laws.