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Corresponding author:
Chow-Yang Lee
School of Biological Sciences
Universiti Sains Malaysia
11800 Penang, Malaysia.
Email: chowyang@usm.my
1
School of Biological Sciences, Universiti Sains Malaysia, 11800 Penang, Malaysia.
2
Department of Chemistry, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand.
_________________
3
Corresponding author, email: chowyang@usm.my.
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
ABSTRACT The Asian subterranean termite, Coptotermes gestroi (Wasmann) and the
Philippine milk termite, Coptotermes vastator Light were compared using molecular
phylogenetic techniques. Partial sequences of the ribosomal RNA small subunit 12S,
ribosomal RNA large subunit 16S and mitochondrial COII were obtained from 9
populations of C. gestroi from South East Asia (Malaysia, Singapore, Thailand and
Indonesia) and 4 populations of C. vastator from the Philippines and Hawaii (USA). In
(Haviland) were used as the outgroups. Consensus sequences were obtained and aligned.
C. vastator and C. gestroi are synonymous, based on high sequence homology across the
12S, 16S and COII genes and phylogenetic analysis.. The interspecific pairwise
vastator, varied only up to 2.79 %. Other findings that further support the synonymity of
KEY WORDS Coptotermes gestroi, Coptotermes vastator, 12-S ribosomal DNA, 16-S
including the Formosan subterranean termite, Coptotermes formosanus Shiraki, and the
Asian subterranean termite, Coptotermes gestroi (Wasmann) have been known for their
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
In Malaysia, Thailand and Singapore, C. gestroi contributes more than 85% of the
total termite damages in buildings and structures in the urban area (Lee 2002; Lee et al.
2003). Geographic distribution of C. gestroi occurs from Assam through Burma and
Thailand to Malaysia and the Indonesian archipelago (Kirton & Brown 2003). It is
marked as the most destructive pest termite, damaging structural wood in the urban areas
in Southeast Asia (Kirton 2005). C. gestroi, reported as C. havilandi in Gay (1969), has
been brought into new geographical regions including parts of North and South America
and Caribbean by “hitch-hiking” in the cargo onboard ships and wooden components of
sailing vessels.
Despite C. gestroi being widely distributed in the tropical South East Asia,
environments in the Philippines. C. vastator is a serious structural pest that accounts for
>90% of the termite damages to timber and wooden structures. These damages cost
nearly USD 1 million to residential and commercial properties of the Mariana Islands and
between USD 8 and 10 million for the damages in and around Manila (Yudin 2002).
banana stumps from Manila (Ehrhorn 1934; Gay 1969). C. vastator was found infesting
a single structure in Honolulu at 1963, and it was not discovered again in Hawaii until
1999. To date, C. vastator is recognized and known to cause major problems in the
islands of Hawaii, Guam and Saipan (Woodrow et al. 2001; Yudin 2002).
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Both C. gestroi and C. vastator are very similar based on analysis of morphological
(Kirton & Brown 2003; Kirton 2005). However, no attempt has been executed so far to
analyses are able to reveal the relationship among populations and to differentiate species
regardless of the termite caste (Szalanski et al. 2003). Mitochondrial genes are known to
evolve more rapidly than nuclear genes and are therefore good markers to analyze
relatively close relationships, such as species relationship within a genus (Miura et al.
2000). In this study, we combined analysis of three mitochondrial genes (12S, 16S, and
COII) to determine the relationship between C. gestroi and C. vastator. Together with
Termite samples and Genbank sequences. Termite samples collected from Malaysia,
Thailand, Singapore, Indonesia, the Philippines, Japan and the United States (Table 1)
were preserved in absolute ethanol. The pictures of soldier heads and whole bodies for
each species were taken using an Olympus SZ2-LGB microscope attached with a digital
and head length were determined for populations of the three species of Coptotermes (n =
analyses.
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
DNA Extraction. Absolute ethanol preserved specimens were washed with distilled
water and dried on a filter paper. Specimens were then placed in a 1.5 ml tube and
0.5M EDTA). DNA was extracted by incubating with Proteinase K at 55ºC for 30 min,
with 10% SDS for further 3 hours incubation. After a single extraction using
phenol/chloroform, total DNA was precipitated with ethanol and then resuspended in 25
l dH2O.
Data collection. Amplification of the 12S, 16S, and COII genes was achieved by
polymerase chain reaction (PCR) using primers shown in Table 2 (Liu & Beckenbach
1992; Simon et al. 1994; Kambhampati & Smith 1995; Miura et al. 1998; Hayashi et al.
2003). PCR amplification was performed in a standard 25- or 50- l reaction volume
with 2l of total genomic DNA, 1 pmol of each primer, 1.5 mM MgCl2, 2 mM dNTPs,
94ºC for 2 min, a postcycle extension at 72ºC for 10 min, and 35 cycles of a standard
three-step PCR (51.3, 53.1, and 58.2 ºC annealing). Reaction conditions for each primer
set were optimized with respect to MgCl2 concentration and annealing temperature. 2 μl
of each PCR product was visualized using a UV transilluminator on a 1.2% agarose gel
containing 0.5 mg/ml ethidium bromide. Double-stranded PCR products were purified
using a SpinClean Gel Extraction Kit (column). Amplified DNA was sent to Macrogen
Inc (Seoul, South Korea) for DNA sequencing. Sequencing was conducted under
BigDyeTM terminatior cycling conditions. The reacted products were then purified using
5
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Nucleotide Data Analysis. BioEdit v7.0.5 software was used to edit individual
electropherograms and form contigs. Multiple consensus sequences were aligned using
CLUSTAL X. The alignment results were adjusted manually for obvious alignment
errors. The data were imported into PAUP4.0 (Swofford 2000) and analyzed to generate
distance based neighbour -joining (NJ) tree and character based parsimony tree. The NJ
tree was calculated using distances from nucleotide data using an uncorrected ‘p’ distance
procedure. Bootstrapping was carried out on trees obtained from the two analyses. A
bootstrap test was used to test the reliability of trees (Felsenstein 1985). Parsimony
analysis was carried out using the heuristic search. Under the heuristic search, RANDOM
addition sequence procedure was employed using 1000 replicates and TBR branch
swapping was carried out. Equally parsimonious trees obtained were then summarized
using strict consensus. Support for clades within a tree was determined by bootstrap
analysis (Felsenstein, 1985) using 1000 replicates of heuristic searches with randon
addition sequences.
Amino Acid Sequence Analysis. The selected amino acid sequences of 12S, 16S, and
COII of C. gestroi and C. vastator were translated from nucleotide using ExPASy
Proteomics tools* with the mitochondrial translation codes AGA GCG ACG, TTA CGC,
and ATG ACA ACA, respectively. Multiple sequence alignment was derived using the
CLUSTAL X program, and default parameters were applied (Thompson et al. 1997). The
aligned result was inspected and adjusted manually to minimize the number of gaps and
insertions.
* available at http://us.expasy.org/
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Morphology. The soldier termites were used for morphological studies (Figure 1). C.
formosanus was readily distinguished from C. vastator and C. gestroi with two pairs of
setae projecting dorso-laterally from the base of the fontanelle, compared with only a pair
of setae in the latter two species (Figure 2). It is difficult to distinguish C. vastator from
C. gestroi by the size and shape of its post mentum and head, as they are highly parallel.
As reported in Kirton and Brown (2003), there is a continuous variation of size and shape
in a single species. The morphology of termites can be influenced by the age and state of
coloration may be attributed to sample age and storage condition (Scheffrahn et al. 2005).
Therefore, the slight variation in the size range between C. vastator and C. gestroi is not
Nucleotide analyses. DNA sequences of approximately 420, 428, and 680 basepairs
were obtained for the genes 12S, 16S, and COII respectively. For 12S, 16S, and COII
genes, 35 bp from the 5’ end of the amplicon was excluded in the analysis to facilitate
phylogenetic comparisons with existing GenBank DNA sequences. The average base
frequencies were A = 0.45, C = 0.22, G = 0.13, and T = 0.20 for the 12S gene, A = 0.43,
C = 0.25, G = 0.11, and T = 0.22 for the 16S gene, A = 0.40, C = 0.24, G = 0.13, and T =
The multiple alignment of 12S gene sequences, including the outgroup taxon has 365
characters, of which 320 are constant and 14 parsimony-informative. For the 16S gene,
there are 385 characters, of which 326 are constant and 20 parsimony-informative. There
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
are 947 characters, of which 404 are constant and 75 parsimony-informative in the
alignment for COII gene. When these three genes were combined, the multiple sequence
alignment had 1729 characters, of which 1466 are constant and 142 parsimony-
informative.
formosanus, as well as the three Coptotermes species and the outgroup are shown in
Table 4. The highest interspecific pairwise sequence divergence between C. gestroi and
C. vastator was 2.79 %. This value was very similar to the divergence between the two
populations of the same species, C. gestroi from Cibinong (Indonesia) (CG001IN) and
Penang (Malaysia) (CG001MY) for the COII gene (2.36 %). This finding implies that
Within the aligned nucleotides of the 12S gene, there are only 2 characters (at
nucleotide positions -61 and -170) in which C. vastator differs from that of C. gestroi.
(CG002IN) (both from Indonesia) has the same nucleotide (T) as C. vastator. This
showed that C. gestroi from Indonesia is extremely similar in its 12S DNA sequence with
C. vastator.
There are 3 characters (at nucleotide positions -39, -103, and -135) that were different
between C. gestroi and C. vastator across the 16S gene sequence. However, C. gestroi
from Indonesia shared the same nucleotide (C) with C. vastator at position 39.
Among the 5 characters (at nucleotide positions -174, -350, -490, -493, and -646) in
the COII gene of C. vastator that were different from C. gestroi, positions 174 and 490
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
(C and T, respectively) were similar between C. gestroi from Indonesia and C. vastator.
Across the 3 genes, the transition rate was 100 %. Substitutions involving C and T
occurred between C. gestroi and C. vastator. Comparable with the results in Ye et al.
(2004), COII is considered as the fastest evolving gene of those examined, while 12S is
the most conserved gene. In this study, high similarity in the sequences of the three genes
suggests that C. gestroi and C. vastator are likely synonymous in nature. Point
mutations were found in sequences across the three genes of C. gestroi from Indonesia
(CG001IN and CG002IN) and C. vastator from colony 3 (CV003PH) from the
Philippines, making these populations deviate from the other populations in the NJ tree.
Comparison of amino acid sequences. The amino acid sequences of 12S, 16S, and
COII between C. gestroi and C. vastator were also compared. The sequences were
deduced from the nucleotide using with the mitochondrial translation codes AGA GCG
ACG, TTA CGC, and ATG ACA ACA respectively. Comparison of the translated amino
acid sequences of 12S, 16S, and COII demonstrated that all C. gestroi are homologous
throughout the 3 genes whereas C. vastator samples differ in 16S and COII gene.
Variations between C. gestroi and C. vastator were observed as COII > 16S > 12S.
For the 12S gene, two nucleotide differences mentioned above corresponded to only
one amino acid difference at position 54 from tyrosine for C. gestroi to isoleucine for C.
vastator. There was no variation in the amino acid sequence for the nucleotide at position
61.
For the 16S gene, the difference of the two clades can be classified into 2 groups of C.
vastator. The first group is CV001HW, CV001PH, CV002PH which differ from C.
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
S for C. vastator) whereas the other group is CV003PH which differs less from C.
gestroi. Only one position difference at 49 from N for C. gestroi to S for C. vastator was
In the COII gene, all C. gestroi and C. vastator in the case of CV002PH and
CV003PH have identical amino acid residues. This shows the close relationship between
these two groups. There are three amino acid differences in the case of CV001PH at
amino acid position 57, 79, and 95. In summary, the highest variation in amino acid
sequences was found in C. vastator for the CV001PH sample, especially in the COII gene
with four amino acid residue differences. The other C. vastator sequences were similar to
C. gestroi which showed only a single amino acid difference in 12S and 16S and no
Phylogenetic relationships inferred from 12S, 16S, and COII genes. Neighbour-
joining dendrograms based on genetic distance from each of the genes were generated to
parsimony (MP) and Maximum Likelihood (ML) analyses on the same data were
performed (trees not shown) to determine if there are conflicts in tree topology from
those obtained by NJ. Results obtained from MP and ML analyses showed the same
Phylogenetic analyses of 12S, 16S and COII genes sequences with Globitermes
sulphureus (Haviland) as the outgroup, revealed two major clades within the Coptotermes
genus (Figure 3 – 5). One clade includes C. gestroi and C. vastator with strong bootstrap
support of 99%, 100%, and 100%, respectively for the 3 genes. Within the Coptotermes
clade, there are two sub-clades, one with various populations of C. gestroi and C.
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
of C. formosanus from Japan and Hawaii. The same conclusion can be made when the
three genes were combined and analysed concurrently in a single tree (Fig 6).
In the 12S and COII genes, populations from Cibinong (CG001IN) and Bogor
(CG002IN), Indonesia were distinct from the other C. gestroi populations due to the point
mutations within C. gestroi at nucleotide positions -166 in the 12S gene and at four
positions in the COII gene (positions -45, -138, -420, and -466). Point mutations were
also found in C. vastator (colony 3) from Laguna, Philippines (CV003PH) which slightly
diverged from the other C. vastator populations (at nucleotide positions -253 in 12S gene,
In 16S gene tree, there was a branch composed of C. gestroi from Indonesia
only 55 % of bootstrap value. This was due to both these individuals sharing unique
spread to the Southeastern Asian region via human activity. Zoogeographical regions
inhabited by this species include Nearctic, Neotropical, and Oriental regions. It was
collected in the Marquesas Islands (Pacific Ocean) in 1932, Mauritius and Reunion
(Indian Ocean) in 1936 and 1957, respectively. In the New World tropics, C. gestroi was
first reported in Brazil (earlier known as Coptotermes havilandi which was later
described as a junior synonym to C. gestroi [Kirton & Brown 2003]) in 1923 and in
Barbados in 1937. Later, the distribution of this species became endemic to Antigua and
Barbuda, Grand Cayman, Grand Turk, Jamaica (Montego Bay and Port Antonio), Little
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Cayman, Montserrat, Nevis, Providenciales, Peurto Rico (San Juan), St. Kits, and the
United States. It has also been collected in southern Mexico (Scheffrahn and Su 2000).
On the other hand, Coptotermes vastator is a serious pest in Guam and the
Philippines. However, little information has been published on this species and its
distribution remains unclear. C. vastator was first found in Hawaii in 1963 but was
eliminated and not detected for the following 25 years. However, this species has recently
resurfaced to infest several places in Hawaii and it has become a serious concern to the
the importance of accurate termite identification to the pest management industry. With
the recognition of a single pest species of Coptotermes in South East Asia, information
concerning C. gestroi and C.vastator species from different geographical regions can be
pooled. Industry will also be able to avoid duplicative testing of termite management
strategies for what was originally thought to be different pest species in different regions,
which will in the long run save time, money and resources (Kirton 2004).
mitochondrial genes in this study suggested that both C. gestroi and C. vastator are
vastator are highly parallel, (2) the genetic distance between C. gestroi and C. vastator
was very low (0.54 - 2.79 %), and (3) there was only a minimal nucleotide difference
vastator/formosanus. There are only a total of ten characters difference detected across
the three genes between C. gestroi and C. vastator. Moreover, out of the ten, only 6
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
at 166 nucleotide positions across the three genes. This seems to suggest that nucleotide
differences between C. gestroi and C. vastator might only be due to population variation.
species specific characters might be reduced. More studies using larger sample sizes and
more populations within the mentioned geographical ranges are currently under
Acknowlegdments
We thank M.E. Scharf (University of Florida, Gainesville) for reviewing the manuscript
draft, J.K. Grace for information on the current status of C. vastator infestation in
Hawaii, and the following individuals who had helped in the collection of the termite
Carlos Garcia (Forest Product Department, the Philippines), Julian Yates III (University
(NLC General Pest Control, Petaling Jaya, Malaysia), Sulaeman Yusuf (Indonesian
Institute of Science) and John Ho (Singapore Pest Management Association). This study
References Cited
Ehrhorn, E. M. 1934. The termites of Hawaii, their economic significance and control,
and the distribution of termites by commerce. In: “Termites and Termite Control”
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
(Kofoid, C. A., ed.), 2nd ed. pp. 321-4. Univ. of California Press, Berkeley,
California.
sequence of mitochondrial ribosomal RNA genes. Proc. Natl. Acad. Sci. USA 92:
2017-2020.
Kirton, L. G. 2004. Termites. Gettung termite taxonomy right. This was how the
paradox of the pest species in Southeat-Asia was resolved. FRIM in Focus, April-
June 2004.
Kirton, L. G., & V. K. Brown. 2003. The taxonomic status of pest species of
Coptotermes in Southeast Asia: resolving the paradox in the pest status of the
Lee, C. Y. 2002. Subterranean termite pests and their control in the urban environment in
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Lee, C. Y., J. Zairi, H. H. Yap & N. L. Chong. 2003. Urban Pest Control – A
Miura, T., Y. Roisin, & T. Matsumoto. 2000. Molecular phylogeny and biogeography
mitochondrial COII gene sequences. Ann. Entomol. Soc. Am. 91: 515-523.
Scheffrahn, R. H., & N.-Y. Su. 2000. Current distribution of the Fomosan subterranean
http://www.ftld.ufl.edu/bbv3n1.htm#termite.
Simon, C., F. Frati, A. Beckenbach, B. Crespi, H. Liu & P. Flook. 1994. Evolution,
15
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Su, N.-Y. 2002. Novel technologies for subterranean termite control. Sociobiology 40(1):
95-101.
The ClustalX windows interface: flexible strategies for multiple sequence alignment
73.
Ye, W., C. Y. Lee, R. H. Scheffrahn, J. M., Aleong, N.-Y. Su, G. W. Bennett, & M.
Yudin, L. 2002. Termites of Mariana Islands and Philippines, their damage and control.
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Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Table 1. Termite specimens and Genbank published sequences used in this study.
Table 2. Primers used for PCR and sequencing
Table 3. Measurements of termite soldiers
Table 4. Genetic distances (%) among C. gestroi, C. vastator, C. formosanus and G.
sulphureus (outgroup) across the 3 genes
Figure 1. Pictures of C. gestroi soldier (A), C. vastator soldier (B), and C. formosanus
soldier (C).
Figure 3. 12S gene neighbour-joining tree, created with PAUP4.0 (Swofford 2000).
Bootstrap values for 1000 replicates are listed above the branches supported at
50%. GenBank accession numbers represent the samples that are pooled from
the NCBI database.
Figure 4. 16S gene neighbour-joining tree, created with PAUP4.0 (Swofford 2000).
Bootstrap values for 1000 replicates are listed above the branches supported at
50%. GenBank accession numbers represent the samples that are pooled from
the NCBI database.
Figure 5. COII gene neighbour-joining tree, created with PAUP4.0 (Swofford 2000).
Bootstrap values for 1000 replicates are listed above the branches supported at
50%. GenBank accession numbers represent the samples that are pooled from
the NCBI database.
Figure 6. Neighbour-joining tree analyzing a combination of the three genes 12S, 16S
and COII concurrently. The tree was created with PAUP4.0 (Swofford 2000).
Bootstrap values for 1000 replicates are listed above the branches supported at
50%. GenBank accession numbers represent the samples that are pooled from
the NCBI database.
17
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Table 1. Termite specimens and Genbank published sequences used in this study.
Samples from
other studies
C. gestroi Malaysia, Penang Island. AY536388
C. gestroi Thailand, Bangkok. AY302709
C. gestroi USA, Miama, Florida. AY558907
18
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
19
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
20
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
C. gestroi
12S 16S COII
C. gestroi 0.00 0.00 0.00-2.36
C. vastator 0.55-0.82 0.79 0.64-2.79
C. formosanus 3.59-3.61 5.00 7.66-9.03
C. vastator
12S 16S COII
C. gestroi 0.54-0.82 0.79 0.64-2.79
C. vastator 0.00 0.00-1.05 0.43-0.64
C. formosanus 3.31-3.59 4.74-5.52 7.63-8.28
C. formosanus
12S 16S COII
C. gestroi 3.59-3.61 5.00 7.66-9.03
C. vastator 3.31-3.59 4.74-5.52 7.63-8.28
C. formosanus 0.00 0.00 0.11-0.32
G. sulphurues
12S 16S COII
C. gestroi 10.32-10.57 13.20-13.23 16.91-18.65
C. vastator 10.55 13.46-13.72 17.24-17.45
C. formosanus 11.35 12.45-12.70 15.93-16.14
21
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Figure 1. Pictures of C. gestroi soldier (A), C. vastator soldier (B), and C. formosanus
soldier (C).
22
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
23
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Figure 3. 12S gene neighbour-joining tree, created with PAUP4.0 (Swofford 2000).
Bootstrap values for 1000 replicates are listed above the branches supported at
50%. GenBank accession numbers represent the samples that are pooled from
the NCBI database.
24
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Figure 4. 16S gene neighbour-joining tree, created with PAUP4.0 (Swofford 2000).
Bootstrap values for 1000 replicates are listed above the branches supported at
50%. GenBank accession numbers represent the samples that are pooled from
the NCBI database.
25
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Figure 5. COII gene neighbour-joining tree, created with PAUP4.0 (Swofford 2000).
Bootstrap values for 1000 replicates are listed above the branches supported at
50%. GenBank accession numbers represent the samples that are pooled from
the NCBI database.
26
Yeap et al. Molecular phylogenetics of C. gestroi and C. vastator
Figure 6. Neighbour-joining tree analyzing a combination of the three genes 12S, 16S
and COII concurrently. The tree was created with PAUP4.0 (Swofford 2000).
Bootstrap values for 1000 replicates are listed above the branches supported at
50%. GenBank accession numbers represent the samples that are pooled from
NCBI database.
27