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Organic Chemistry
The study of the compounds of carbon. Over 10 million compounds have been identified.
About 1000 new ones are identified each day!
C is a small atom.
It forms single, double and triple bonds. It is intermediate in electronegativity (2.5). It forms strong bonds with C, H, O, N, and many metals.
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N u mb er of Relative En ergies Electrons S hell of Electrons S hell Can Hold in Thes e Shells h igh er 32 4 18 3 8 2 2 1 low er
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Hunds Rule:
When orbitals of equal energy are available but there are not enough electrons to fill all of them, one electron is added to each orbital before a second electron is added to any one of them; the spins of the electrons in degenerate orbitals (same energy) should be aligned.
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Electron Configuration
Energy-level diagram: A pictorial designation of where electrons are placed in an electron configuration. For example, the energy-level diagram for the ground-state electron configuration of carbon is 1s2 2s2 2p2. For chlorine: 1s2 2s2 2p6 3s2 3p5.
3p 2p Energy 2s Energy 3s
2p 2s
1s
1s
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5p 4d 5s 4p 3d 4s 3p 3s 2p 2s 1s
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.. . ... S
[Ne]3s23p4
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1A
H
2A
3A
4A
5A
. .N : . . .P : .
6A
. :O: . . :S : .
7A
. :.. : F :Cl : : .
8A
He
. . .
Be
Li
: :
: :
:N e : :A r : : :
Na
Mg
Al
. Si : .
: :
. B
. C: .
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Electronegativity
Electronegativity:
A measure of an atoms attraction for the electrons it shares with another atom in a chemical bond.
Pauling scale
Generally increases left to right in a row. Generally increases bottom to top in a column.
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* B 2,0 Al 1,6 Sc 1,4 Y 1,2 C 2,5 Si 1,9 Ge 2,0 Sn 1,9 N 3,0 P 2,2 As 2,2 Sb 2,0 O 3,5 S 2,6 Se 2,5 Te 2,1 F 4,0 Cl 3,2 Br 3,0 I 2,7 * * Kr 3,3 Xe 3,0
Formation of Ions
A rough guideline:
Ions will form if the difference in electronegativity between interacting atoms is 1.9 or greater. Example: sodium (EN 0.9) and fluorine (EN 4.0) We use a single-headed (barbed) curved arrow to show the transfer of one electron from Na to F.
Na
Na
In forming Na+F-, the single 3s electron from Na is transferred to the partially filled valence shell of F.
Na(1 s 22s 22p 63s 1) + F(1s 2 2s 2 2p 5 ) Na + (1s 22s 22p 6) + F-(1s 2 2s 2 2p 6 )
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Covalent Bonds
The simplest covalent bond is that in H2
The single electrons from each atom combine to form an electron pair.
H
+
H-H
The shared pair functions in two ways simultaneously; it is shared by the two atoms and fills the valence shell of each atom.
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Octet Rule
Atoms tend to gain, lose or share electrons until they are surrounded by eight valence electrons (i.e., until they resemble a noble gas) Molecules share pairs of electrons in bonds and may also have lone pairs
:O
H
:
H
O :
:
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5. If not enough electrons to provide octet to central atom, try multiple bonds
(alternative methods can be found in different books )
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In neutral molecules hydrogen has one bond. carbon has 4 bonds and no lone pairs. nitrogen has 3 bonds and 1 lone pair. oxygen has 2 bonds and 2 lone pairs. halogens have 1 bond and 3 lone pairs.
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Formal Charge
Formal charge: The charge on an atom in a molecule or a polyatomic ion.
- Apparent electronic charge of each atom in a Lewis structure (or the charge an atom would have if electron pairs were shared equally) - Each atom owns one e- of a bonding pair - A purely covalent model
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Formal Charge
To derive formal charge
1. Write a correct Lewis structure for the molecule or ion. 2. Assign each atom all its unshared (nonbonding) electrons and one-half its shared (bonding) electrons. 3. Compare this number with the number of valence electrons in the neutral, unbonded atom.
Formal charge N umber of = valence electrons in th e neutral, un bonded atom All One h alf of un shared + all sh ared electrons electrons
4. The sum of all formal charges is equal to the total charge on the molecule or ion.
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Formal Charge
Formal charge
-1 C
0 N
C: (4 valence electrons) - (2 non bonding + 3 bonding) = -1 N: (5 valence electrons) - (2 non bonding + 3 bonding) = 0
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Formal Charge
Formal Charge
+1
-1
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Formal Charge
Example: Draw Lewis structures, and show which atom in each bears the formal charge.
(a) NH2 + (d) CH3 NH3 (b) HCO3 (e) HCOO
(c) CO3
2-
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: Cl : : Cl : : Al : Cl : :
Boron trifluoride
Aluminum chloride
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10e around P
Only for elements from 3rd row (P, S) and heavier, which can make use of empty d orbitals
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: Cl
: : : :
: Cl
Phosphorus pentachloride
Functional Groups
Functional group: An atom or group of atoms within a molecule that shows a characteristic set of physical and chemical properties. Functional groups are important for three reasons; they are:
1. the units by which we divide organic compounds into classes. 2. the sites of characteristic chemical reactions. 3. the basis for naming organic compounds.
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Alcohols
Contain an -OH (hydroxyl) group bonded to a tetrahedral carbon atom.
H H -C-O-H Fu nctional group : : H-C-C-O-H H H Ethan ol (an alcohol)
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Alcohols
Alcohols are classified as primary (1), secondary (2), or tertiary (3) depending on the number of carbon atoms bonded to the carbon bearing the -OH group.
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Alcohols
There are two alcohols with molecular formula C3H8O.
HHH H-C-C-C-O-H H HH H HOH H C-C-C-H HH H or CH3 CH2 CH2 OH a 1 alcohol
or
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Amines
Contain an amino group; an sp3-hybridized nitrogen bonded to one, two, or three carbon atoms.
An amine may be 1, 2, or 3.
: CH3 N H H Methylamine (a 1 amine) : : CH3 N H CH3 Dimethylamine (a 2 amine) CH3 N CH3 CH3 Trimethylamine (a 3 amine)
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Functional group
Acetone (a ketone)
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Carboxylic Acids
Contain a carboxyl (-COOH) group.
O C O H Fu nctional group :O: CH3 -C-O-H : :
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Carboxylic Esters
Ester: A derivative of a carboxylic acid in which the carboxyl hydrogen is replaced by a carbon group.
O C O Functional group
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Carboxylic Amide
Carboxylic amide, commonly referred to as an amide: A derivative of a carboxylic acid in which the OH of the -COOH group is replaced by an amine.
O C N Fu nctional group O CH3 -C-N-H H Acetamid e (a 1 amid e)
The six atoms of the amide functional group lie in a plane with bond angles of approximately 120.
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Electrons in molecules appear in bonding pairs or lone pairs Each pair of electrons repels all other pairs Molecules adopt geometries with electron pairs as far from each other as possible
Electron pairs define regions of space where they are likely to be: Between nuclei for bonding pairs Close to one nucleus for lone pairs those regions are called electron domains 1-45
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Molecular Geometries
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VSEPR Model
Example: predict all bond angles for these molecules and ions.
( a ) N H4 + ( e ) CH 3 CH = CH 2 ( h) CH3 CH O ( b ) CH3 NH 2 ( f ) H 2 CO 3 ( i) CH 3 COOH ( d ) CH3 OH ( g ) HCO 3 ( j ) BF4 -
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Molecular dipole moment (): The vector sum of the individual bond dipole moments in a molecule.
reported in Debyes (D)
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F O C O F
Carbon dioxide =0D Boron trifluoride =0D
Cl B F Cl Cl C Cl
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Water = 1.85D
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O H C H
Formaldehyde = 2.33 D
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Erwin Schrdinger: wave equation wave function, : A solution to a set of equations that depicts the energy of an electron in an atom. each wave function is associated with a unique set of quantum numbers. each wave function represents a region of threedimensional space and is called an orbital. 2 is the probability of finding an electron at a given point in space.
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Bonding-Combined VB&MO
Bonding molecular orbital: A MO in which electrons have a lower energy than they would have in isolated atomic orbitals. Sigma () bonding molecular orbital: A MO in which electron density is concentrated between two nuclei along the axis joining them and is cylindrically symmetrical.
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sp 3 Hybridization, with electron population for carbon to form four single bonds
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Example
Name Ethane
H H H-C- C- H H H H H C C H H H- C C- H
sp
120
three bonds and one bond two bonds and two bonds
Ethene
sp
180
Ethyne
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Resonance
For many molecules and ions, no single Lewis structure provides a truly accurate representation.
O: H3 C C : :O: :O :
and -
H3 C C : O:
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Resonance
Linus Pauling - 1930s
Many molecules and ions are best described by writing two or more Lewis structures. Individual Lewis structures are called contributing structures. Connect individual contributing structures by doubleheaded (resonance) arrows. The molecule or ion is a hybrid of the various contributing structures.
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Resonance
Examples: equivalent contributing structures.
:
:O: :N O: : :N
O: CH3 :O :: C
: O :CH3 O: : C
O: : O ::
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Resonance
Curved arrow: A symbol used to show the redistribution of valence electrons. In using curved arrows, there are only two allowed types of electron redistribution:
from a bond to an adjacent atom. from a lone pair on an atom to an adjacent bond.
Resonance
Split quickly in groups of 4 Read hand-out (chemical activity 3, part B. model 4 &5) Work on the critical thinking questions (10-14) You have 15 min We will discuss the questions in 5 min
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Resonance
All contributing structures must
1. have the same number of valence electrons. 2. obey the rules of covalent bonding: no more than 2 electrons in the valence shell of H. no more than 8 electrons in the valence shell of a 2nd period element. 3. differ only in distribution of valence electrons; the position of all nuclei must be the same. 4. have the same number of paired and unpaired electrons.
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Resonance
The carbonate ion
Is a hybrid of three equivalent contributing structures. The negative charge is distributed equally among the three oxygens as shown in the elpot.
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Resonance
Preference 1: filled valence shells
Structures in which all atoms have filled valence shells contribute more than those with one or more unfilled valence shells.
CH3
+ O
CH3 O
+ C
H Greater contribution; both carbon and oxygen have complete valence shells
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Resonance
Preference 2: maximum number of covalent bonds
Structures with a greater number of covalent bonds contribute more than those with fewer covalent bonds.
CH3 + O
CH 3 O
+ C
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Resonance
Preference 3: least separation of unlike charge
Structures with separation of unlike charges contribute less than those with no charge separation.
O: CH3 -C- CH3 Greater contribution (no separation of unlike charges)
: :O: -
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Resonance
Preference 4: negative charge on the more electronegative atom.
Structures that carry a negative charge on the more electronegative atom contribute more than those with the negative charge on a less electronegative atom.
O C H3 C CH3 (a) Less er con trib ution (1) H3 C O C CH3 (b) Greater contribu tion (2) H3 C O C CH3 (c) S hould n ot be d raw n
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Resonance
-1 S C N
-1
S C N
+1
S C
-2 N
Favored structure provides minimum formal charges places negative formal charges on more electronegative atoms implies smaller separation of charges
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Bond
C-C
Orbital Overlap
H C C H
C-C C-H
Ethene
H
Ethyne