Annexure

Annexure - V
BIOINFORMATICS FACILITIES
A. LIST OF DISTRIBUTED INFORMATION CENTRES (DICs) AND CONTACT (DICs PERSONS
Indian Institute of Science
Prof. S. Ramakumar Coordinator, Bioinformatics Centre Raman Building, Bangalore - 560 012. Phone : 91-080-3601409 Fax : 91-080-3600551, 3600683 E-mail: bioinf@physics.iisc.ernet.in

Apex Bioinformatics Centre

Dr. T. Madhan Mohan Director, Department of Biotechnology, Ministry of Science and Technology, Block 2, 7th Floor, CGO Complex, Lodhi Road, New Delhi - 110 003. Phone : 91-011-24362788 Fax : 91-011-24361813 E-mail: madhan@dbt.nic.in

Institute of Microbial Technology

Dr. G. P. S. Raghava Coordinator, Bioinformatics Centre Sector 39-A, Chandigarh - 160 036. Phone : 91-0172-690557 Fax : 91-0172-690585 E-mail : raghava@imtech.res.in

Jawaharlal Nehru University

Prof. Alok Bhattacharya Coordinator, Bioinformatics Centre Hall No. 4. Lecture Hall Complex New Mehrauli Road, New Delhi - 110 067. Phone : 91-011-26165884 Fax : 91-011-26165886 E-mail: co_bic@mail.jnu.ac.in

Bose Institute
Dr. Anuradha Lohia Coordinator, Bioinformatics Centre Acharya J.C. Bose Centenary Building P-1/12, C.I.T. Scheme VII KOLKATA 700 054. Phone: 91-033-23346626 Fax: 91-033-23343886 E-mail: dicdbt@boseinst.ernet.in

Madurai Kamaraj University

Prof. K. Dharmalingam Coordinator, Bioinformatics Centre School of Biotechnology Madurai 625 021. Phone : 91-452-2459141 Fax : 91-452-2459105 E-mail: rafi@mrna.tn.nic.in

Centre for Cellular & Molecular Biology

Dr. K. Guruprasad Coordinator, Bioinformatics Centre Uppal Road, Hyderabad - 500 007. Phone : 91-040-27192779 Fax : 91-040-27160591 E-mail: guru@ccmb.res.in

Indian Agricultural Research Institute

Dr. Naveen Kalra Coordinator, Bioinformatics Centre Pusa Campus, New Delhi 110 012. Phone : 91-011-25851255, 25852490 Fax : 91-011-25851719 E-mail : bic@bic-iari.ren.nic.in

National Brain Research Center

Dr. Vijayalakshmi Ravindranath Coordinator, Bioinformatics Centre Near N.S.G. Campus, Nainwal Mode Road, Manesar Gurgaon - 120 050. Phone : 91-0124-2338921 Fax : 91-0124-2338928 E-mail: nandini@nbrc.ac.in

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National Institute of Immunology

Dr. D. M. Salunke Coordinator, Bioinformatics Centre Shahid Jeet Singh Marg, New Delhi- 110 067. Phone : 91-011-26162281 Fax : 91-011-26162125 E-mail: dinakar@nii.res.in

Assam Agricultural University

Dr. P. C. Deka Coordinator, Bioinformatics Centre Department of Genetics & Plant Breeding, Jorhat 785 013 Phone : 91-0376-2340101, 2340095 Fax : 91-0376-2340101 E-mail: pcdeka@aau.nic.in

University of Pune
Prof. P. Khandekar Coordinator, Bioinformatics Centre Ganeshkhind Pune - 411 007. Phone : 91-020-5690195 Fax : 91-020-5690087 E-mail: dddeo@unipune.ernet.in director@bioinfo.ernet.in

Banaras Hindu University

Prof. B. D. Singh Coordinator, Bioinformatics Centre School of Biotechnology Varanasi 221 005. Phone : 91-0542-2368364 (O), 2316641 (R) Fax : 91-0542-2368693 E-mail: brahmadsingh@epatra.com

B.

LIST OF DISTRIBUTED INFORMATION SUBINFORMATION SUB (SUB-DIC -DICs CENTRES (SUB -DICs) AND CONTACT PERSONS

Barkatullah University
Dr. Anil Prakash Coordinator, Bioinformatics Centre Bhopal - 462 026. Phone : 91-0755-2489188, 2489088 Fax : 91-0755-2581835, 5287047 E-mail: anil prakash98@hotmail.com fblimbpl@sancharnet.in

Advanced Centre for Treatment, Research & Education in Cancer Kharghar,

Dr. Robin Mukhopadhyaya Coordinator, Bioinformatics Centre NAVI MUMBAI 410 208. Phone : 91-022-27412919 Fax : 91-022-27412984 E-mail: cri3@soochak.ncst.ernet.in btiscri@vsnl.in

Banasthali Vidyapeeth (Deemed University)

Prof. Vinay Sharma Coordinator, Bioinformatics Centre P.O. Banasthali 304 022. Rajasthan. Phone : 91-01438-228302, 228341 Ext. 316 (O) Fax : 91-01438-228365 E-mail: Vinaysharma30@yahoo.co.uk

Aligarh Muslim University

Dr. M. Saleemuddin Coordinator, Bioinformatics Centre Biotechnology Building Aligarh - 202 002 (U.P.). Phone : 91-0571-2720449 Fax : 91-0571-2721776 E-mail: alg_btisamua@sancharnet.in

Bharathidasan University
Dr. L. Uma Coordinator, Bioinformatics Tiruchirappalli 620 024. Phone : 91-0431-2407082 Fax : 91-0431-2407084 E-mail: director@nfmc.res.in Centre

All India Institute of Medical Sciences

Dr. Y. D. Sharma Coordinator, Bioinformatics Centre Ansari Nagar, New Delhi 110 029. E-mail: yds@aiims.ernet.in

Anna University
Dr. P. Gautam Coordinator, Bioinformatics Centre Sardar Patel Road, Guindy, Chennai 600 025. Phone : 91-044-22350772 Fax : 91-044-22350299 E-mail: tkothai@annauniv.edu

Birla Institute of Scientific Research

Dr. P. Ghosh Coordinator, Bioinformatics Centre, Statue Circle, Jaipur 302 001. Phone : 91-0141-2381183, 5108163 Fax : 91-0141-2381721 E-mail: bioinfo@bisrjaipur.com

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Biotech Consortium India Ltd.

Dr. S.R. Nair Coordinator, Bioinformatics Centre 5th Floor, Anuvrat Bhawan, 210 Deen Dayal Upadhyaya Marg, New Delhi - 110 002. Phone : 91-011-23219064-67 Fax : 91-011-23219063 E-mail: bcildelhi@vsnl.com

Central Sericultural Research and Training Institute

Dr. S. B. Dandin Coordinator, Bioinformatics Centre Manandavadi Road, Srirampura, Mysore 570 008. Phone : 91-0821-362757, 362547 Fax : 91-0821-362845 E-mail: btis_csrti@yahoo.com

Biotech Park in Biotechnology City

Dr. P. K. Seth Coordinator, Bioinformatics Centre Biotechnology City, Lucknow RSAC Campus, Sector GJankipuram, Kursi Road, Lucknow226 001 (U.P.) Phone : 91-0522-2365050, 2365755 Fax : 91-0522-2365755 E-mail : pkseth@hotmail.com ceo_biotechpark@biotechcitylucknow.org

CSK Himachal Pradesh Krishi Vishvavidyalaya

Dr. S. K. Sharma Coordinator, Bioinformatics Centre Palampur - 176061 Phone : 91-1894-230314 (O), 232006 (R) Fax : 91-1894-230511, 230465 E-mail: biotech@cskkv.hp.nic.in

Central Drug Research Institute

Dr. P. K. Roy Coordinator, Bioinformatics Centre Chattar Manzil, P. B. No. 173 Lucknow - 226 001. Phone : 91-0522-2213812 Fax : 91-0522-2223938 E-mail: prodyutr@yahoo.com

Dr. Y. S. Parmar University of Horticulture and Forestry

Dr. S. V. Bhardwaj Coordinator, Bioinformatics Centre P.O. Nauni, Solan -173 230 Phone : 91-01792-252310, 252639 Fax : 91-01792-252242 E-mail: svbhardwaj@lycos.com

Central Institute of Fresh water Aquaculture (CIFA)

Ms. A. Antony Coordinator, Bioinformatics Centre P.O. Kausalyaganga Bhubaneswar 751 002 Phone : 91-0674-2465430 Fax : 91-0674-2465407 E-mail : cifa@ori.nic.in

Devi Ahilya Vishwavidyalaya

Prof. Anil Kumar Coordinator, Bioinformatics Centre School of Biotechnology Khandwa Road, Indore452 017 (M.P.). Phone : 91-0731-2470372, 2470373 Fax : 910731-2470372 E-mail: bioinfo@sancharnet.in

Central Institute of Medicinal and Aromatic Plants

Dr. Ashok Sharma Coordinator, Bioinformatics Centre P.O. CIMAP, Kukrail Picnic Spot Road, Lucknow - 226 015. Phone : 91-0522-2357133 Fax : 91-0522-2342666, 2357136 E-mail: ashoksharma@cimap.res.in

G.B. Pant University of Agriculture and Technology

Dr. G. K. Garg Coordinator, Bioinformatics Centre Pant Nagar - 263 145. (Uttaranchal) Phone : 91-05944-233898 Fax : 91-05944-233473 E-mail: gkg@lycos.com

Central Plantation Crops Research Institute

Dr. V. Rajagopal Coordinator, Bioinformatics Centre P.O. Kudlu, Kasaragod 671 124, Phone : 91-04994-432974 Fax : 91-499-430322 E-mail: bioinfcpcri@yahoo.co.uk

Guru Nanak Dev University

Dr. Prabhjeet Singh Coordinator, Bioinformatics Centre Amritsar 143 005. Phone : 91-0183-2258431 Fax : 91-0183-2258272 E-mail: bicamritsar@yahoo.com

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Himachal Pradesh University

Prof. T. C. Bhalla Coordinator, Bioinformatics Centre Summer Hill, Simla 171 005. Phone : 91-0177-2832153, 2832154, 2831948 Fax : 91-0177-2832154 E-mail: bhallatc@rediffmail.com

Institute of Life Sciences

Prof. P.C. Supakar Coordinator, Bioinformatics Centre Nalco Square, Near Kalinga Hospital, Chandrasekharpur, Bhubaneswar 751 023. Phone : 91-0674-2301460, 2301476 Fax : 91-0674-2300728 E-mail: pcsupakar@hotmail.com

Indian Institute of Chemical Biology

Dr. Chitra Dutta Coordinator, Bioinformatics Centre 4, Raja S. C. Mullick Road, Jadavpur, Kolkata 700 032. Phone : 91-033-24733491 (Ext. 212) Fax : 91-033-24735197, 24730284 E-mail: cdutta@iicb.res.in

Kerala Agriculture University

Dr. R. Keshavachandran Coordinator, Bioinformatics Centre P.O. Vellanikkara, Thrissur 680 656. Phone : 91-0487-2371994 Fax : 91-0487-2370019 E-mail: kauhqr@hub.nic.in

Indian Institute of Spices Research

Dr. Santhosh J. Eapen Coordinator, Bioinformatics Centre P.B. No. 1701, Calicut 673 012 (Kerala) Phone : 91-0495-2732000 Fax : 91-0495-2730294 E-mail: disc@iisr.org

Mahatma Gandhi Institute of Medical Sciences

Dr. B. C. Harinath Coordinator, Bioinformatics Centre JB Tropical Disease Research Centre Sewagram, Wardha 442 102. Phone : 91-07152-284038 Fax : 91-07152-284038 E-mail: jbtdrc@nagpur.dot.net.in

Indian Institute of Technology

Prof. Saroj Mishra Coordinator, Bioinformatics Centre Department of Biochemical Engineering & Biotechnology, Hauz Khas, New Delhi 110 016. Phone : 91-011-26591001 Fax : 91-011-26582282 E-mail: saroj@dbeb.iitd.ernet.in

M.S. Swaminathan Research Foundation

Mr. S. Senthilkumaran Coordinator, Bioinformatics Centre Third Cross Street ,Taramani Institutional Area, Chennai 600 113 Phone : 91-44-22542791, 22542698, 22541229 Fax : 91-44-22541319 E-mail: senthil@mssrf.res.in

Indian Institute of Technology (IIT)

Dr. S.C. Kundu Coordinator, Bioinformatics Centre Kharagpur 721 302 (West Bengal) Phone : 91-03222-283764, 278433 Fax : 91-03222-278433 E-mail: kundu@hijli.iitkgp.ernet.in

M. S. University of Baroda
Dr. B. B. Chattoo Coordinator, Bioinformatics Centre Dept. of Microbiology & Biotechnology Baroda 390 002. Phone : 91-0265-2794396 Fax : 91-0265-2792508 E-mail: chattoo@giasbm01.vsnl.net.in

Indian Veterinary Research Institute

Dr. Rajendra Singh Coordinator, Bioinformatics Centre Izatnagar 243 112 (U.P.). Phone : 91-581-2302571 Fax : 91-581-2303284 E-mail: btis@ivri.up.nic.in

National Botanical Research Institute

Dr. Sudershan Kumar Coordinator, Bioinformatics Centre Lucknow 226 001. Phone : 91-0522-2205673, 2204026 Fax : 91-0522-2205673, 2204026 E-mail: s.kumar@nbri.res.in sudershank@hotmail.com

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National Dairy Research Institute

Dr. D. K. Jain Coordinator, Bioinformatics Centre Karnal 132 001 (Haryana) Phone : Fax : E-mail: btis@ndri.hry.nic.in

Rajiv Gandhi Centre for Biotechnology

Dr. D. Karunagaran Coordinator, Bioinformatics Centre Thycaud P.O., Poojappura, Thiruvananthapuram 695 014. Phone : 91-0471-2342315 Fax : 91-0471-2348096 E-mail: info@rgcb.org

National Environmental Engineering Research Institute

Dr. Apurba Gupta Coordinator, Bioinformatics Centre Computer Application Division, Nehru Marg, Nagpur 570 013. Phone : 91-0712-2236413, 2226071-75 Ext. 257 Fax : 91-0712-2222725 E-mail: esdneeri@rediffmail.com

Regional Research Laboratory

Dr. G. N. Qazi Coordinator, Bioinformatics Centre (CSIR), Canal Road, Jammu Tawi 180 001. Phone : 91-0191-2547850, 2570526 Fax : 91-0191-2547850 E-mail: bionformatics@rrljammu.org

National Institute of Oceanography

Dr. D. Chandramohan, Coordinator, Bioinformatics Centre Biological Oceanography Division, Dona Paula, Goa 403 004. Phone : 91-0832-2456700 Extn. 4281 Fax : 91-0832-2456703 E-mail: mohan@darya.nio.org

State Council of Science & Technology for Sikkim

Sh. B. S. Basishtha Coordinator, Bioinformatics Centre P.O. Deorali, Gangtok, East Sikkim 737 102. Phone : 91-03592-229703 Fax : 91-03592-228764 E-mail: shobhar_99@hotmail.com

Tamil Nadu Agricultural University

Dr. P. Balasubramanian Coordinator, Bioinformatics Centre Centre for Plant Molecular Biology Coimbatore 641 003. Phone : 91-422-2431222, Ext. 353, 2433890 Fax : 91-422-2431672 E-mail: balasubrap@hotmail.com

North Eastern Hill University

Prof. P. Tandon Coordinator, Bioinformatics Centre NEHU Campus, Shillong 793 022. Phone : 91-0364-2550150 Fax : 91-0364-2550300 E-mail: bioinfo1@sancharnet.in

Tamil Nadu Veterinary & Animal Science University

Dr. G. Thulasi Coordinator, Bioinformatics Centre Chennai 600 007. Ph : 91-044-25365418, 25381506, Ext 264 Fax : 91-044-25360106 E-mail: mvcaris@md3.vsnl.net.in btismvc@giasmd01.vsnl.net.in

Pondicherry University
Dr. P. P. Mathur, Coordinator, Bioinformatics Centre Pondicherry 605 011. Phone : 91-413-2655212 Fax : 91-413-2655211 E-mail: bicpu2001@yhoo.co.in

Punjab Agricultural University

Dr. S. C. Sharma Coordinator, Bioinformatics Centre Ludhiyana 141 004 (Punjab). Phone : 91-161-2401444, 2411774 Fax : 91-161-2401444, 2411774 E-mail: gbt@yahoo.com

Tropical Botanical Garden and Research Institute

Dr. P. N. Krishnan Coordinator, Bioinformatics Centre Palode, Thiruvananthapuram- 695562 Phone : 91-0472-869622, 869626 Fax : 91-0472-869646 E-mail: tbgri@sancharnet.in

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University of Agriculture Sciences

Dr. I. Karunasagar Coordinator, Bioinformatics Centre Deptt. of Fishery Microbiology Mangalore 575 002. Phone : 91-0824-246384, 243180 Fax : 91-0824-246384, 248366 E-mail: mircen@sancharnet.in

University of Delhi, South Campus

Prof. Anil K. Tyagi Coordinator, Bioinformatics Centre Department of Biochemistry, B.J. Road, New Delhi 110 021. Phone : Fax : E-mail: dusc@dusc.ernet.in bioinfo@del2.vsnl.net.in

University of Calcutta
Dr. Subhasis Mukherhjee Coordinator, Bioinformatics Centre 92, Acharya Prafulla Chandra Road, Kolkatta 700 009. Phone : 91-033-23510359 Fax : 91-033-23510360 E-mail: arthakur@cubmb.ernet.in

University of Kashmir
Dr. Akbar Masood Coordinator, Bioinformatics Centre Department of Biochemistry Hazratbal, Srinagar, Kasmir 190 006 Phone : 91-0194-2428723 Fax : 91-0194-2428723 E-mail: Akbar Masood@hotmail.com

C.
S. No.
1 2 3 4 5 6 7 8 9 10

DATABASES AVAILABLE WITH BTISNET CENTRES

Name of the Database
Lipase Database GenoQuest Tripeptide Knowledge base Agricola Agris CABCD Current Science Life Science Current Science Agriculture Citrus Germplasm Database of North-East India Tea Germplasm Database

Application
Comprehensive web based resource for lipases Complete resource for Salmonella typhi Genome For protein structure prediction Bibliographic database Bibliographic database Bibliographic database Bibliographic database Bibliographic database Morphological & Biochemical characteristics Varietal information, Morphological, Biochemical, Molecular biological and Tissue culture Online database on cyanobacteriology Medicinal Plants

Name of the BTIS Net Centre

Anna University -do-doAssam Agricultural University -do-do-do-do-do-do-

11 12 13

Blue Green Database (BGBASE) DOMAP

14 15 16 17

Coconut Cultivar Identification Web based database to identify coconut cultivars using isozyme and microsatellite markers. Coconut Biotechnology Literature Database to retrieve research papers on coconut biotechnology. Root (Wilt) literature (Full Text) Database to retrieve research papers on Root (wilt) disease. Protocol Web pages Coconut tissue culture and molecular studies. PDB The protein data bank Database on protein structure and function Available on CDs.

Bharathidasan University Birla Institute of Scientific Research Central Plantation Crops Research Institute -do-do-doCentral Sericultural Research and Training Institute

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S. No.
18 19 20

Name of the Database

Biotechnology Citation Index

Application

Name of the BTIS Net Centre

-do-do-do-

21 22 23 24 25 26 27 28

Available on CD for searching on latest Biotechnology research and publications In Silico Management of Data generated on mulberry germplasm using data on mulberry genome DNA markers (RAPD) Database of DNA sequences For storing and retrieving DNA sequences of for important plant genes & important plant groups responsible for yield, mulberry and Primer Design quality, diseases and pest resistance Database of hill Crop bioresources For Reference to the Scientists dealing with various aspects of plant sciences Improved crop varieties of For Reference to Students , Plant Breeders and Himachal Pradesh Extension workers as well as farmers TAXON Plant taxonomic data management. ORCHID DB Medline (1966-2003) Agricola (1970-2003) Agris (1975-2003) Food Science & Technology Search of details of Indian orchids & conservation status. Medicinal Biotechnology Plant Biotechnology Plant Biotechnology Food preservation, food processing, equipment update and advanced food manufacturing techniques Abstract of Agriculture/ Animal Science Abstract of Animal production & reproduction Abstract of Biological Science Abstract of Biotechnology Abstract of Food Science and tech. Medicine Abstract of Veterinary Science Reference databases Foot & Mount Disease Reference databases of Embryo Transfer Technology Reference databases of Plasmids & Recombinant DNA Reference databases of Yak Reference databases of Cattle & buffalo Population Database of disease, control and treatment of wild life animals in India A database Black pepper germplasm Curcuma species Myristica species and Nutmeg germplasm A database on chitinase A database of Spices protocols A bibliographic database on spices Cumulative index of the Journal Journal of Spices & Aromatic Crops published by Indian Society of Spices A web resource for Phytophthora species. Contain Morphological and Molecular data (Nucleotide, Protein, Structure, Genome & Literature) Database of chemical compounds and metabolic pathways in cardamom volatile oil

CSKHPKV, Palampur -do Devi Ahilya Vishvavidhyalaya -doGuru Nanak Dev University -do-do-do-

29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48

Agris Beast-CD Biological Abstracts Biotechnology abstracts FSTA Medline Express Vet CD Foot & Mouth Disease Database Embryo Transfer Technology Database Plasmids & Recombinant DNA Technology Databases Yak Databases Cattle & Buffalo Database Wild life Disease in India Spice Genes -I Spice Genes -II Spice Genes -III Chitinase Spice Prop Spice bibliography JOSAC cumulative index

Indian Veterinary Research Institute -do-do-do-do-do-do-do-do-do-do-do-doIndian Institute of Spices Research -do-do-do-do-do-do-

49

PIR-Phytophthora Information Resource

-do-

50

CardCC&MPbase

-do-

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Name of the Database

Biotechnology Abstracts in the field of Biotechnology Biological & Agricultural Index Agricola Agrisearch Kaubiotechprotocols Improved varieties of crops released by KAU Indicators of development of Agriculture in Kerala Database on B-1,3 glucanase, hydroxy methyl glutaryl CoA reductase and chitinase from plant species (developed) FilaDB TbDB GynSoft ObSoft PsySoft SEVAMED on CD

Application
Abstracts of scientific and technical research Indexing of over 225 of the key international English language periodicals in the field of biological and agricultural sciences Archieval file of the Agricola database, citations to agricultural literature acquired by the U.S National Agricultural Library Contains database and research projects on Agriculture, food and nutrition, Fisheries etc. Details of the protocols in Biotechnology developed at KAU Detailed information on the cultural aspects, varietal description etc. about the crop varieties released by KAU Provides information on district wise data on different variables which contribute to the development of Agriculture in Kerala It contains nucleotide & amino acid sequences, name of authors, accession number and other relevant information Filariasis Patient Information System Database for better diagnosis, clinico-immuno monitoring and management Tuberculosis Patient Information System Database for better diagnosis, clinico-immuno monitoring and management Complete Gynaecology Patient Information System Database for Indoor & Outdoor Patients records. Complete Obstetrics Patient Information System Database for Indoor & Psychiatry Patient Information System Database for Indoor & Outdoor Patient records. SEVAMED on CD an user friendly bibliography with abstract Database on Infectious Disease Research and Traditional Medicine (2001- 2003) Biotechnology Marine biodiversity

Name of the BTIS Net Centre

Kerala Agricultural University -do-do-do-do-do-do-do-

59 60 61 62 63 64

Mahatma Gandhi Institute of Medical Sciences -do-do-do-do-do-

65 66

Biotechnology Abstracts NIOs Database on Marine Life of India Marine Prawns of India (Module 1) onCDROM NIOs Database on Marine Life of India Marine Crabs of India (Module 2) on CDROM NIOs Database on Marine Life of India Mangroves of India (Module 3) on CDROM Database on Marine Lignicolous Fungi a database on taxonomy in collaboration with Hongkong University NIOs Database on Marine Life of India Seaweeds of Central West coast of India (Module 4) on CDROM 2003-04 World Database of over 19000 legumes

National Institute of Oceanography -do-

67

Marine biodiversity

-do-

68

Marine biodiversity

-do-

69

Marine biodiversity

-do-

70

Marine biodiversity

-do-

71

Procured/Subscribed

National Botanical Research Institute

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72 73 74

Name of the Database

CD-ROM on Legumes of Northern Eurasia CD-ROM Database on New Crop Compendium by FAO CD-ROM Database on The State of the Worlds Plant Genetic Resources by FAO ILDIS South Asia Legume Database of 2030. PLIN-Base, a nomenclature database of Plants of India on Internet is being developed (www.IPNI.org) Database of Botanic Gardens of India Database of herbaria of all CSIR labs of India Database of Oral traditional knowledge Database of Plant Resources of UP Database of plants of Andaman and Nicobar islands The Helminth Parasite Spectrum of Northeast India The Medicinal Plants of Meghalaya Traditional Fermented Foods and Beverages of the Sikkim Himalayas Medline, Toxiline, Agris, Current Contents in Life Sciences, Current Contents in Agricultural Biology & Environmental Sciences Database of Genomic Information of Sequenced Bacteria Database of Medicinal plants used for Dermatological purposes Complete nucleotide and protein sequence of Whitespot syndrome virus of shrimp Nucleotide and protein sequence of Penaeus monodon Database on fish pathogen Aeromonas hydrophila Complete nucleotide sequence of seafood-borne pathogen Vibrio vulnificus Database on Vibrio parahaemolyticus Current Content CDROM Database on Agriculture, Environmental Sciences & Biology Current Content CDROM Database on Life Sciences Medicinal & Aromatic Plants of J&K.

Application
Procured/Subscribed -do-do-

Name of the BTIS Net Centre

National Botanical Research Institute -do-do-

75

76

Storing and retrieving of data on internationally agreed parameters as well as parameters of regional importance. Nomenclature of plants of India

-do-

-do-

77 78 79 80 81 82 83 84

Database of Rare and Threatened plants of India -doHerbarium Specimen Database Traditional knowledge database Plant Resources of UP Plants of Andaman and Nicobar islands Biodiversity Information Biodiversity Information Biodiversity Information -do-do-do-doNorth-Eastern Hill University -do-do-

85

Bibliography

Pondicherry University

86 87 88

Bacterial Genomes Medicinal Plants In-house Database Studies related to prediction of protein structre, function, antigenicity, development of microarrays Population genetic studies, development of molecular markers, development of primers for sequencing new genes Studies on diagnostic and vaccine development Studies on diagnostic development, molecular typing Studies on diagnostic development, molecular typing Information tool for academic community used for data retrieval and information management. Information tool for academic community used for data retrieval and information management. Complete information on medicinal & aromatic plants of J&K state.

-do-doUniversity of Agricultural Sciences, Mangalore -do-

89

90 91

-do-do-

92 93 94 95

-doUniversity of Kashmir -do-do-

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D.
S. No. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44

SOFTWARES AVAILABLE WITH BTISNET CENTRES

Name of the Software SeqWeb MSI Modules MOE MOIL AMBER7 CHARMM28 MEAD NAB WHATIF MODELLER THREADER PROSA II MS 3D_Dock AUTODOCK DOCK Glimmer-R BLAST, PHYLIP & CLUSTAL , GROMOS GROMACS AUTODOCK DOCK WHATIF Delphi Rasmol, SwissPDbViewer ClustalW MolScript DOTTER EMBOSS PHYLIP MatLab VECTOR NTI Ver4 EMBOSS Bioedit 4.7.7 Rapidistance SPSS 7.5. Phylip DNASIS PDRAW ClustalW Vector NTI Reference Manager Exome Coconut Germplasm Management System PHYLIP Application Web enabled version of GCG Package InsightII, Biopolymer, Discover, Catalyst Drug Design & Molecular modeling MM & MD Simulations MM & MD Simulations MM and MD Simulations Computation of Electrostatics using FDPB Building of DNA and RNA structures Homology Modeling & Protein Structure Analysis Homology Modeling Threading & Fold Recognition Fold Recognition Molecular Surface Generation Docking Docking Protein Docking Gene Identification Sequence Analysis Molecular Dynamics Molecular Dynamics in a parallel enviroment AutomatedDocking of ligands to macromolecules Protein ligand Docking Software Molecular Modeling Electrostatics modeling package Molecular Visualizers Multiple Sequence Alignment Rendering 3D images Sequence Analysis Sequence analysis package Phylogenetic trees Numerical computation Software package for Molecular biology All sorts of bioinformatics analysis Name of the BTIS Net Centre

45

46 47 48 49

SPSS Cn3D Clustal W MATLAB

NII -do-do-do-do-do-do-do-do-do-do-do-do-do-do-do-do-doAnna University -do-do-do-do-do-do-do-do-do-do-do-do-doAssam Agricultural University DNA and Protein analysis -doRAPD data analysis -doStatistical Data Analysis -doPhylogenic data analysis -doDNA Analysis -doPlasmid drawing -doMultiple sequencing -doSequence Analysis Birla Institute of Scientific Research Project Management -doGenome Analysis -doSoftware to store and retrieve the passport data, Central Plantation morphological data, genetical character data and Crops Research molecular markers data. Institute Software for phylogenetic analyisis Central Sericultural Research and Training Institute For statistical analysis -doA Molecular modeling and viewing software -doProgramme for multiple alignment -doScientific applications, Development of ANN based Devi Ahilya tools, etc. Vishvavidhyalaya

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S. No. 50 51 52 53 54 55 56 57 58 59

Name of the Software DNASIS PROSIS Deep View (SPDBV) RasMol Chime. Protein explorer. PCR Recipe OLREA Library Manager Lab Manager.

Application DNA sequence input & analysis Protein input & analysis Macromolecular visualization Macromolecular visualization Macromolecular visualization Macromolecular visualization Calculation of the quantities of the reagents to be added for a PCR run On-line restriction enzyme analysis of DNA sequences. Management of library resources including books, journals, CD-ROMs, etc Management of laboratory resources and maintenance of stocks of instruments, chemicals, purchase details, etc This package allows the user to draw scientific 2D or 3D graphs to fit the experimental data on plot; a very useful package for scientific graphs. For analysis of data and graphs Software for analysis of various types of genomic and protein based data Minitab 13 is an easy to use statistical package which can carry out a wide variety of statistical tasks Generation of Chaos Game Representations (CGRs) of different protein families and characterization of patterns or statistical biases, if any, in such CGRs Analysis of nucleic acid and protein sequences

Name of the BTIS Net Centre -do-do-do -do-do-do-do-do-do-do-

60

Sigma Plot 2001 (V-7.1)

Guru Nanak Dev University -do-do-do-

61 62 63

Grafit Version (Erithacus Software) Lasergene-5 Sequence Analysis software Minitab 13

64

PROCGR

Indian Institute of Chemical Biology

65 66

GCG Wisconsin Package - Version 10.3 STATISTICA - Version 6

- do - do -

67

68

Integrated data analysis, graphics, database management and custom application development system featuring a wide selection of basic and advanced analytic procedure for business, data mining, science and engineering applications INSIGHT-II - Version 2000.1 Creation, display, and rotation of 3-dimentional chemical structures with built-in support for proteins and nucleic acids Insight II 2K 3D graphical environment for Molecular 1. Biopolymer 2. Discover modeling/ Energy minimization and Dynamics Omiga 2 Sequencer 4.1.4 Rasmol General sequence analysis software Tool for viewing, editing, and assembling data generated by automated DNA sequencers Rasmol is a molecular graphics program intended for the visualization of proteins, nucleic acids and small molecules This tool helps to find the phylogenetic analysis in form of tree. It helps to analysis relationship between two or multiple species with the help of different types of tree. ClustalG provides an integrated environment for reading sequence files, performing pair wise, multiple sequence and profile alignments and analyzing the results Multiple program Packege including multiple sequence alignment, tree generation ( dendogram generation) , etc It is the visualition tool

- do -

69 70 71

Indian Institute of Technology, Kharagpur -do-doIndian Veterinary Research Institute -do-

72

Tree View

73

CLUSTAL G

-do-

74

PHYLIP

-do-

75

Oligo

-do-

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S. No. 76 77 78 79 80 81 82 83

Name of the Software Blandleder RUMPACK LIGPACK FMDPACK SYSTAT DS Gene From Accelerys BioMed Catche Disect 2000

Application It is the visualization tool for the analysis purpose of the result of electrolysis For retrieval and storage of bibliography database on Rumen microbes For retrieval and storage of bibliography on Lignin biotechnology For retrieval and storage of bibliography on Foot & Mouth Disease For statistical Analysis Genome and proteome Analysis Drug designing Software for managing various resources in different sections/ departments of the research institutes Phytophthora species determination based on Morphological characters An expert system for biovar characterization of Ralstonia solanacearum Software for monitoring the training activities of Krishi Vigyan Kendras A software for diagnosing the diseases of Ginger A software for managing inventory of manuscripts to be published in scientific journals To create quality animations, multimedia presentations etc. For sequence analysis applications For multiple sequence alignment Molecule generation tool For phylogenetic analysis For clustering program For molecular Visualization For molecular Visualization For molecular Visualization For molecular Visualization For multiple sequence alignment For phylogenetic analysis Sequence alignment editor For phylogeny program Database creation Database creation Database creation Database creation Creation of database for Plant diversity (legumes) Creation and management of database for references Creation and management of database for references Creation of database on Web for Plant diversity of India Creation and management of database of herbarium specimen Creation and management of database of oral knowledge Creation of database of plant resources of UP Conference registration Complete Demonstration package on Bioinformatics

Name of the BTIS Net Centre -do-do-do-do-doInstitute of Life Sciences, Bhubaneswar -doIndian Institute of Spices Research -do-do-do-do-doKerala Agricultural University -do-do-do-do-do-do-do-do-do-do-do-do-doNational Botanical Research Institute -do-do-do-do-do-do-do-do-do-do-doPondicherry University

84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115

Phytfinder Biovarchar Agtrgscan Diaginger Journal Manage Macromedia Director 7 Omiga Genedoc Isisdraw Spectrum NTSYS pc 2.1 Rasmol Qmol Swiss pdb viewer Pymol Clustal X Treeview Bioedit Molphy Alice ver. 2.6 with utilities, UK Alice 2.1, UK Pandora Software UK BG-Recorder Legume Software of South Asia (LDSA) Reference Management System (RMS) Software PLIN-Base PLIN-Web Herbnet Indian Traditional Knowledge Database (ITKD) PLIN-UP On-Line CRIS Computer based tutorial on Bioinformatics

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S. No. 116

Name of the Software Genopack

Application Software package using perl in linux containing eight different programmes like Allele Match Finder, Consensus Sequence Generator, Protein Sequence Generator etc. For analyses of proteins primary sequence like Mass Spectrum Analysis, Enzymatic digestion, Hydrophobicity, Helical Wheel etc

Name of the BTIS Net Centre Rajiv Gandhi Centre for Biotechnology

117

Peptide Analyzer

-do-

E.

IMPORTANT BIOINFORMATICS TRAINING/ WORKSHOPS ORGANIZED DURING 2003-04

Title of the Training/ Workshop
International Symposium on Bioinformatics for Genome Analysis Computer Basics with Application in Office Automation Bioinformatics Research & Applications Computer Basics with Application in Office Automation Database Management System in Agricultural Research Computer Basics with Application in Office Automation

S. Name of the Centre No.

1 2 Bose Institute Indian Agricultural Research Institute -do-do-do-do3 4

Duration
2 days 4 days 1 days 5 days 4 days 3 days 3 days 3 days 4 days 1 day 4 days 1 day

Date
29-30 January, 2004 26-29 May, 2003 19 June, 2003 20-24 June, 2003 25-28 August, 2003 14-16 January, 2004 19-21 March, 2003 11-13 December, 2003 14-17 December, 2003 18 December, 2003 11-14 December, 2003 28 November, 2003

Indian Institute of Science Workshop on Data Mining applications in Bioinformatics University of Pune -do-doInternational workshop on Clinical Data Management National workshop on Knowledge Discovery in Life Sciences: Sequence Based Bioinformatics Approaches National Symposium on Emerging Trends in Bioinformatics Workshop on Introduction to Molecular Graphics and Visualization Introduction to Bioinformatics Faculty Development Programme (For faculty from various Engineering colleges in Tamilnadu) National Workshop on Use of Computers and Internet in Biological Sciences National Workshop on Linux in Bioinformatics Current trends in Bioinformatics Computer Basics and Application in Bioinformatics

Anna University -do-

Assam Agricultural University -doBanasthali Vidyapith Barkatullah University

2 days 3 days 2 days 2 days One week 3 days 3 days 3 days 3 days 3 days

26-27 June, 2003 25-27 March, 2004 16-17 January, 2004 23-24 January, 2004 22-26 March, 2004 18-20 September, 2003 22-24 December, 2003 28-30 January, 2003 27-29 August, 2003 3-5 February, 2004

7 8 9 10

Bharathidasan University Workshop on Bioinformatics for Cyanobacteriologists - WOBIC Birla Institute of Scientific Genomics and Proteomics Research -doMolecular Modelling of Proteins Bioinformatics Centre, Role of Bioinformatics in Biological Research Biotech City, Lucknow -doIntroduction to Bioinformatics: Principles & Applications -doDatabase Management System and Internet Resources in Biological Sciences

11

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S. Name of the Centre No.

12 CSK HPKV -do13

Title of the Training/ Workshop

Application of bioinformatics in agriculture and biotechnology based research Biological databases search and retrieval

Duration
3 days 2 days 4 days 4 days 1 day

Date
10-12 January, 2004 To be organized in February, 2004 03-06 June, 2003 10-13 February, 2004 19 June, 2003

Central Institute of Training on Bioinformatics & Statistics in Freshwater Aquaculture Aquaculture Research -doWorkshop cum training on Recent developments in Bioinformatics and Statistics in Aquaculture Central Plantation Crops Brainstorming session on Database for the Research Institute management of genetic resources of horticultural crops -do-doBioinformatics and its application in plantation crops research Bioinformatics resources and databases Training on Career Planning in Bioinformatics

14

6 days 3 days 2 days

1823 August, 2003 5-7 October, 2003 2021 June, 2003

15

Central Sericultural Research and Training Institute do do

Intellectual Property Rights and Patenting in Sericulture Biotechnology and Bioinformatics in Sericulture Computer Basics & Applications in Bioinformatics. Genomics & Proteomics.

4 days 2 days 3 days 2 days 5 days 3 days 1 Month 2 days 21 days 2 days 3 Days 3 days 3 days 3 days 3 days

2528 August, 2003 2930 August, 2003 13-15 November, 2003 16-17 January, 2004 10-14, January, 2004 18-20 November, 2003 5 May-4 June, 2003 29-30 October, 2003 2-23 December, 2003 27-28 September, 2003 16-18 March, 2004 20-22 November, 2003 18-20 December, 2003 26-28 February, 2003 29 September-1 October, 2003 17-18 December, 2003 2325 February, 2004 2426 March, 2004

16

Devi Ahilya University -do-

17 18 19

G.B. Pant university of Online documentation of Plant Biodiversity Agriculture and Technology of India with special reference to Uttaranchal Indian Institute of Chemical Biology Application of Bioinformatics tools to Genomics & Proteomics

Indian Institute of Spices Summer training on Bioinformatics Research -doWorkshop on Agricultural Bioinformatics -doBiotechnology and Bioinformatics Tools & Applications Indian Institute of Workshop on Bioinformatics & its Technology, Kharagpur application Institute of Life Sciences Application of bioinformatics in Genomics and Proteomics Kerala Agricultural University -do-doBasics of Database Management & data analysis in Agricultural Research Biotechnology Information: Tools and sources Sequence analysis of Proteins and nucleic Acids Medical Informatics & Biomedical Communication

20 21 22

23

Mahatma Gandhi Institute of Medical Sciences National Dairy Research Institute North-Eastern Hill University -do-

24 25

Workshop on Decision Support and Expert Systems in Dairying Introduction to Basics of Retrieval and Creation of Scientific Databases Database creation with Emphasis on Biodiversity

2 days 3 days 3 days

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S. Name of the Centre No.

26 27

Title of the Training/ Workshop

Duration
3 days 3 days 1 week 1 day 3 days 3 days

Date
5-7 February, 2003 18-20 February, 2004 12-17 March, 2003 23 July, 2003 10-12 March, 2004 2-4 September, 2003

Pondicherry University Prospects & Challenges in Bioinformatics -doSystems Approach to Bioinformatics Rajiv Gandhi Centre for In-house training on Linux Biotechnology, Thiruvananthapuram National seminar on Bioinformatics: Theory -do& Applications University of Agricultural Sciences, Mangalore University of Kashmir Application of Bioinformatics in Aquatic Sciences Internet & Bioinformatics

28 29

275