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Domain Archaea [ 1, 0, 0 ]* Phylum Euryarchaeota [ 1, 0, 0 ] Class Methanobacteria [ 1, 0, 0 ] Order Methanobacteriales [ 1, 0, 0 ] Family Methanobacteriaceae [ 1, 0, 0 ] Genus Methanobrevibacter [ 1,0, 0 ] SpeciesMethanobrevibacter oralis [ 1, 0, 0 ] Domain Bacteria [ 687, 1346, 1273 ] Phylum Actinobacteria [ 91, 178, 163 ] Class Actinobacteria [ 91, 178, 163 ] Order Actinom ycetales [ 64, 109, 97 ] Family Actinom ycetaceae [ 37, 34, 24 ] Genus Actinobaculum [ 1, 1, 0 ] Species Actinobaculum sp. oral taxon 183 [ 1, 1, 0 ] Genus Actinom yces [ 34, 28, 19] Species Actinom yces cardiffensis [ 1, 1, 1 ] Species Actinom yces dentalis [ 1, 0, 0 ] Species Actinom yces georgiae [ 1, 1, 1 ] Species Actinom yces gerencseriae [ 1, 1, 0 ] Species Actinom yces graevenitzii [ 1, 2, 1 ] Species Actinom yces israelii [ 1, 1, 0 ] Species Actinom yces johnsonii [ 1, 3, 1 ] Species Actinom yces m assiliensis [ 1, 2, 2 ] Species Actinom yces m eyeri [ 1, 0, 0 ] Species Actinom yces naeslundii [ 1, 3, 2 ] Species Actinom yces naeslundii II [ 1, 0, 0 ] Species Actinom yces odontolyticus [ 1, 2, 2 ] Species Actinom yces oricola [ 1, 0, 0 ] Species Actinom yces oris [ 1, 1, 1 ] Species Actinom yces radicidentis [ 1, 0, 0 ] Species Actinom yces sp. oral taxon 169 [ 1, 1, 0 ] Species Actinom yces sp. oral taxon 170 [ 1, 1, 1 ] Species Actinom yces sp. oral taxon 171 [ 1, 1, 1 ] Species Actinom yces sp. oral taxon 172 [ 1, 1, 0 ] Species Actinom yces sp. oral taxon 175 [ 1, 1, 1 ] Species Actinom yces sp. oral taxon 177 [ 1, 0, 0 ] Species Actinom yces sp. oral taxon 178 [ 1, 1, 1 ] Species Actinom yces sp. oral taxon 179 [ 1, 0, 0 ] Species Actinom yces sp. oral taxon 180 [ 1, 1, 1 ] Species Actinom yces sp. oral taxon 181 [ 1, 1, 1 ] Species Actinom yces sp. oral taxon 414 [ 1, 0, 0 ] Species Actinom yces sp. oral taxon 446 [ 1, 0, 0 ] Species Actinom yces sp. oral taxon 448 [ 1, 1, 1 ] Species Actinom yces sp. oral taxon 449 [ 1, 0, 0 ] Species Actinom yces sp. oral taxon 525 [ 1, 0, 0 ] Species Actinom yces sp. oral taxon 848 [ 1, 1, 1 ] Species Actinom yces sp. oral taxon 877 [ 1, 1, 0 ] Species Actinom yces sp. oral taxon 896 [ 1, 0, 0 ] Species Actinom yces sp. oral taxon 897 [ 1, 0, 0 ] Genus Arcanobacterium [ 1, 1,1 ] SpeciesArcanobacterium haem olyticum [ 1, 1, 1 ] Genus Mobiluncus [ 1, 4, 4 ] Species Mobiluncus m ulieris [ 1, 4, 4 ] Family Corynebacteriaceae [ 6, 20, 20 ] Genus Corynebacterium [ 6, 20,20 ] SpeciesCorynebacterium diphtheriae [ 1, 15, 15 ]
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SpeciesCorynebacterium SpeciesCorynebacterium SpeciesCorynebacterium SpeciesCorynebacterium SpeciesCorynebacterium

durum [1, 1, 1 ] m atruchotii [ 1, 2, 2 ] m ucifaciens [ 1, 0, 0 ] sp. oral taxon 184 [ 1, 0, 0 ] urealyticum [ 1, 2, 2 ]

Family Derm acoccaceae [ 1, 1, 1 ] Genus Kytococcus [ 1, 1, 1 ] Species Kytococcus sedentarius [ 1, 1, 1 ] Family Dietziaceae [ 1, 0, 0 ] Genus Dietzia [ 1, 0, 0 ] Species Dietzia sp. oral taxon 368 [ 1, 0, 0 ] Family Microbacteriaceae [ 2, 1, 1 ] Genus Microbacterium [ 2, 1, 1] SpeciesMicrobacterium sp. oral taxon 185 [ 1, 0, 0 ] SpeciesMicrobacterium sp. oral taxon 186 [ 1, 1, 1 ] Family Micrococcaceae [ 5, 7, 6 ] Genus Arsenicococcus [ 1, 0, 0] SpeciesArsenicococcus sp. oral taxon 190 [ 1, 0, 0 ] Genus Kocuria [ 1, 0, 0 ] Species Kocuria sp. oral taxon 189 [ 1, 0, 0 ] Genus Rothia [ 3, 7, 6 ] Species Rothia aeria [1, 2, 1 ] Species Rothia dentocariosa [ 1, 2, 2 ] Species Rothia m ucilaginosa [ 1, 3, 3 ] Family Mycobacteriaceae [ 3, 27, 27 ] Genus Mycobacterium [ 3, 27,27 ] SpeciesMycobacterium leprae [ 1,2, 2 ] SpeciesMycobacterium neoaurum [ 1, 0, 0 ] SpeciesMycobacterium tuberculosis [ 1, 25, 25 ] Family Propionibacteriaceae [ 8, 18, 17] Genus Propionibacterium [ 8,18, 17 ] SpeciesPropionibacterium acidifaciens [ 1, 1, 0 ] SpeciesPropionibacterium acnes [1, 13, 13 ] SpeciesPropionibacterium avidum [ 1, 2, 2 ] SpeciesPropionibacterium propionicum [ 1, 1, 1 ] SpeciesPropionibacterium sp. oral taxon 192 [ 1, 1, 1 ] SpeciesPropionibacterium sp. oral taxon 193 [ 1, 0, 0 ] SpeciesPropionibacterium sp. oral taxon 194 [ 1, 0, 0 ] SpeciesPropionibacterium sp. oral taxon 915 [ 1, 0, 0 ] Family Sanguibacteraceae [ 1, 1, 1 ] Genus Sanguibacter [ 1, 1, 1 ] Species Sanguibacter keddieii [ 1, 1, 1 ] Order Bifidobacteriales [ 13, 56, 55 ] Family Bifidobacteriaceae [ 13, 56, 55 ] Genus Alloscardovia [ 1, 2, 1 ] Species Alloscardovia om nicolens [ 1, 2, 1 ] Genus Bifidobacteriaceae[G-2] [ 1, 0, 0 ] SpeciesBifidobacteriaceae[G-2] sp. oral taxon 407 [ 1, 0, 0 ] Genus Bifidobacterium [ 6, 37,37 ] SpeciesBifidobacterium anim alis [1, 12, 12 ] SpeciesBifidobacterium breve [ 1,6, 6 ] SpeciesBifidobacterium dentium [1, 4, 4 ] SpeciesBifidobacterium longum [1, 15, 15 ] SpeciesBifidobacterium scardovii [1, 0, 0 ] SpeciesBifidobacterium subtile [ 1,0, 0 ] Genus Gardnerella [ 1, 11, 11 ] Species Gardnerella vaginalis [ 1, 11, 11 ]
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Genus Parascardovia [ 1, 3, 3 ] Species Parascardovia denticolens [ 1, 3, 3 ] Genus Scardovia [ 2, 2, 2 ] Species Scardovia inopinata [ 1, 1, 1 ] Species Scardovia w iggsiae [ 1, 1, 1 ] Genus Turicella [ 1, 1, 1 ] Species Turicella otitidis [ 1, 1, 1 ] Order Coriobacteriales [ 14, 13, 11 ] Family Coriobacteriaceae [ 14, 13, 11 ] Genus Atopobium [ 7, 7, 6 ] Species Atopobium m inutum [ 1, 1, 1 ] Species Atopobium parvulum [ 1, 1, 1 ] Species Atopobium rim ae [ 1, 1, 1 ] Species Atopobium sp. oral taxon 199 [ 1, 1, 1 ] Species Atopobium sp. oral taxon 416 [ 1, 0, 0 ] Species Atopobium sp. Oral Taxon 810 [ 1, 1, 0 ] Species Atopobium vaginae [ 1, 2, 2 ] Genus Cryptobacterium [ 1, 1, 1] SpeciesCryptobacterium curtum [1, 1, 1 ] Genus Eggerthella [ 1, 1, 1 ] Species Eggerthella lenta [ 1, 1, 1 ] Genus Olsenella [ 4, 3, 2 ] Species Olsenella profusa [ 1, 1, 0 ] Species Olsenella sp. oral taxon 807 [ 1, 0, 0 ] Species Olsenella sp. oral taxon 809 [ 1, 1, 1 ] Species Olsenella uli [1, 1, 1 ] Genus Slackia [ 1, 1, 1 ] Species Slackia exigua [ 1, 1, 1 ] Phylum Bacteroidetes [ 122, 92, 68 ] Class Bacteroides [ 81, 72, 54 ] Order Bacteroidales [ 81, 72, 54 ] Family Bacteroidaceae [ 4, 2, 0 ] Genus Bacteroidaceae[G-1] [ 1,1, 0 ] SpeciesBacteroidaceae[G-1] sp. oral taxon 272 [ 1, 1, 0 ] Genus Bacteroides [ 3, 1, 0 ] Species Bacteroides heparinolyticus [ 1, 0, 0 ] Species Bacteroides tectus [ 1, 1, 0 ] Species Bacteroides zoogleoform ans [ 1, 0, 0 ] Family Bacteroidales[F-2] [ 1, 1, 1 ] Genus Bacteroidales[G-2] [ 1, 1,1 ] SpeciesBacteroidales[G-2] sp. oral taxon 274 [ 1, 1, 1 ] Family Bacteroidales[F-3] [ 1, 0, 0 ] Genus Bacteroidales[G-3] [ 1, 0,0 ] SpeciesBacteroidales[G-3] sp. oral taxon 911 [ 1, 0, 0 ] Family Porphyrom onadaceae [ 16, 20,12 ] Genus Porphyrom onas [ 12, 19,11 ] SpeciesPorphyrom onas asaccharolytica [ 1, 2, 2 ] SpeciesPorphyrom onas catoniae [1, 1, 1 ] SpeciesPorphyrom onas endodontalis [ 1, 1, 1 ] SpeciesPorphyrom onas gingivalis [ 1, 12, 5 ] SpeciesPorphyrom onas sp. oral taxon 275 [ 1, 0, 0 ] SpeciesPorphyrom onas sp. oral taxon 277 [ 1, 0, 0 ] SpeciesPorphyrom onas sp. oral taxon 278 [ 1, 1, 0 ] SpeciesPorphyrom onas sp. oral taxon 279 [ 1, 1, 1 ] SpeciesPorphyrom onas sp. oral taxon 284 [ 1, 0, 0 ] SpeciesPorphyrom onas sp. oral taxon 285 [ 1, 0, 0 ] SpeciesPorphyrom onas sp. oral taxon 395 [ 1, 0, 0 ]
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SpeciesPorphyrom onas uenonis [1, 1, 1 ] Genus Tannerella [ 4, 1, 1 ] Species Tannerella forsythia [ 1, 1, 1 ] Species Tannerella sp. oral taxon 286 [ 1, 0, 0 ] Species Tannerella sp. Oral Taxon 808 [ 1, 0, 0 ] Species Tannerella sp. oral taxon 916 [ 1, 0, 0 ] Family Prevotellaceae [ 59, 49, 41 ] Genus Alloprevotella [ 8, 4, 4 ] Species Alloprevotella rava [ 1, 2, 2 ] Species Alloprevotella sp. oral taxon 308 [ 1, 0, 0 ] Species Alloprevotella sp. oral taxon 473 [ 1, 1, 1 ] Species Alloprevotella sp. oral taxon 474 [ 1, 0, 0 ] Species Alloprevotella sp. oral taxon 912 [ 1, 0, 0 ] Species Alloprevotella sp. oral taxon 913 [ 1, 0, 0 ] Species Alloprevotella sp. oral taxon 914 [ 1, 0, 0 ] Species Alloprevotella tannerae [ 1, 1, 1 ] Genus Prevotella [ 51, 45, 37 ] Species Prevotella baroniae [ 1, 1, 0 ] Species Prevotella bivia [ 1, 2, 2 ] Species Prevotella buccae [ 1, 3, 2 ] Species Prevotella buccalis [ 1, 1, 1 ] Species Prevotella dentalis [ 1, 1, 1 ] Species Prevotella denticola [ 1, 2, 2 ] Species Prevotella enoeca [ 1, 0, 0 ] Species Prevotella fusca [ 1, 0, 0 ] Species Prevotella histicola [ 1, 1, 1 ] Species Prevotella interm edia [ 1, 2, 2 ] Species Prevotella loescheii [ 1, 1, 1 ] Species Prevotella m aculosa [ 1, 2, 2 ] Species Prevotella m arshii [ 1, 1, 1 ] Species Prevotella m elaninogenica [ 1, 2, 2 ] Species Prevotella m icans [ 1, 2, 2 ] Species Prevotella m ultiform is [ 1, 1, 1 ] Species Prevotella m ultisaccharivorax [ 1, 1, 1] Species Prevotella nigrescens [ 1, 2, 1 ] Species Prevotella oralis [ 1, 2, 2 ] Species Prevotella oris [ 1, 3, 3 ] Species Prevotella oulorum [ 1, 1, 1 ] Species Prevotella pallens [ 1, 1, 1 ] Species Prevotella pleuritidis [NV] [ 1, 1, 0 ] Species Prevotella saccharolytica [ 1, 1, 1 ] Species Prevotella salivae [ 1, 2, 1 ] Species Prevotella scopos [ 1, 0, 0 ] Species Prevotella shahii [ 1, 0, 0 ] Species Prevotella sp. oral taxon 292 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 293 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 296 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 299 [ 1, 1, 1 ] Species Prevotella sp. oral taxon 300 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 301 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 304 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 305 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 306 [ 1, 1, 1 ] Species Prevotella sp. oral taxon 309 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 310 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 313 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 314 [ 1, 1, 0 ]
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Species Prevotella sp. oral taxon 315 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 317 [ 1, 1, 1 ] Species Prevotella sp. oral taxon 376 [ 1, 1, 0 ] Species Prevotella sp. oral taxon 396 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 443 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 472 [ 1, 1, 1 ] Species Prevotella sp. oral taxon 475 [ 1, 1, 0 ] Species Prevotella sp. oral taxon 515 [ 1, 0, 0 ] Species Prevotella sp. oral taxon 526 [ 1, 0, 0 ] Species Prevotella sp. Oral Taxon 820 [ 1, 0, 0 ] Species Prevotella veroralis [ 1, 2, 2 ] Class Bacteroidetes[C-1] [ 10, 0, 0 ] Order Bacteroidetes[O-1] [ 10, 0, 0 ] Family Bacteroidetes[F-1] [ 10, 0, 0 ] Genus Bacteroidetes[G-3] [ 6,0, 0 ] SpeciesBacteroidetes[G-3] sp. oral taxon 280 [ 1, 0, 0 ] SpeciesBacteroidetes[G-3] sp. oral taxon 281 [ 1, 0, 0 ] SpeciesBacteroidetes[G-3] sp. oral taxon 365 [ 1, 0, 0 ] SpeciesBacteroidetes[G-3] sp. oral taxon 436 [ 1, 0, 0 ] SpeciesBacteroidetes[G-3] sp. oral taxon 503 [ 1, 0, 0 ] SpeciesBacteroidetes[G-3] sp. oral taxon 899 [ 1, 0, 0 ] Genus Bacteroidetes[G-4] [ 1,0, 0 ] SpeciesBacteroidetes[G-4] sp. oral taxon 509 [ 1, 0, 0 ] Genus Bacteroidetes[G-5] [ 3,0, 0 ] SpeciesBacteroidetes[G-5] sp. oral taxon 505 [ 1, 0, 0 ] SpeciesBacteroidetes[G-5] sp. oral taxon 507 [ 1, 0, 0 ] SpeciesBacteroidetes[G-5] sp. oral taxon 511 [ 1, 0, 0 ] Class Bacteroidetes[C-2] [ 1, 0, 0 ] Order Bacteroidetes[O-2] [ 1, 0, 0 ] Family Bacteroidetes[F-2] [ 1, 0, 0 ] Genus Bacteroidetes[G-6] [ 1,0, 0 ] SpeciesBacteroidetes[G-6] sp. oral taxon 516 [ 1, 0, 0 ] Class Flavobacteria [ 30, 20, 14 ] Order Flavobacteriales [ 30, 20, 14 ] Family Flavobacteriaceae [ 27, 20, 14 ] Genus Bergeyella [ 5, 0, 0 ] Species Bergeyella sp. oral taxon 319 [ 1, 0, 0 ] Species Bergeyella sp. oral taxon 322 [ 1, 0, 0 ] Species Bergeyella sp. oral taxon 422 [ 1, 0, 0 ] Species Bergeyella sp. oral taxon 900 [ 1, 0, 0 ] Species Bergeyella sp. oral taxon 907 [ 1, 0, 0 ] Genus Capnocytophaga [ 22,20, 14 ] SpeciesCapnocytophaga gingivalis [ 1, 1, 1 ] SpeciesCapnocytophaga granulosa [ 1, 1, 0 ] SpeciesCapnocytophaga haem olytica [ 1, 0, 0 ] SpeciesCapnocytophaga leadbetteri [ 1, 1, 1 ] SpeciesCapnocytophaga ochracea [ 1, 4, 3 ] SpeciesCapnocytophaga sp. oral taxon 323 [ 1, 0, 0 ] SpeciesCapnocytophaga sp. oral taxon 324 [ 1, 1, 1 ] SpeciesCapnocytophaga sp. oral taxon 326 [ 1, 1, 1 ] SpeciesCapnocytophaga sp. oral taxon 332 [ 1, 1, 1 ] SpeciesCapnocytophaga sp. oral taxon 334 [ 1, 0, 0 ] SpeciesCapnocytophaga sp. oral taxon 335 [ 1, 1, 1 ] SpeciesCapnocytophaga sp. oral taxon 336 [ 1, 1, 1 ] SpeciesCapnocytophaga sp. oral taxon 338 [ 1, 1, 1 ] SpeciesCapnocytophaga sp. oral taxon 380 [ 1, 1, 1 ] SpeciesCapnocytophaga sp. oral taxon 412 [ 1, 1, 1 ]
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SpeciesCapnocytophaga sp. oral taxon 863 [ 1, 1, 0 ] SpeciesCapnocytophaga sp. oral taxon 864 [ 1, 1, 0 ] SpeciesCapnocytophaga sp. oral taxon 878 [ 1, 1, 0 ] SpeciesCapnocytophaga sp. oral taxon 901 [ 1, 0, 0 ] SpeciesCapnocytophaga sp. oral taxon 902 [ 1, 0, 0 ] SpeciesCapnocytophaga sp. oral taxon 903 [ 1, 0, 0 ] SpeciesCapnocytophaga sputigena [ 1, 2, 1 ] Family Flavobacteriales[F-1] [ 2, 0, 0 ] Genus Flavobacteriales[G-1] [2, 0, 0 ] SpeciesFlavobacteriales[G-1] sp. oral taxon 318 [ 1, 0, 0 ] SpeciesFlavobacteriales[G-1] sp. oral taxon 321 [ 1, 0, 0 ] Family Flavobacteriales[F-2] [ 1, 0, 0 ] Genus Flavobacteriales[G-2] [1, 0, 0 ] SpeciesFlavobacteriales[G-2] sp. oral taxon 320 [ 1, 0, 0 ] Phylum Chlam ydiae [ 1, 5, 5 ] Class Chlam ydiae [ 1, 5, 5 ] Order Chlam ydiales [ 1, 5, 5 ] Family Chlam ydiaceae [ 1, 5, 5 ] Genus Chlam ydophila [ 1, 5, 5 ] Species Chlam ydophila pneum oniae [ 1, 5, 5 ] Phylum Chloroflexi [ 1, 0, 0 ] Class Chloroflexi[C-1] [ 1, 0, 0 ] Order Chloroflexi[O-1] [ 1, 0, 0 ] Family Chloroflexi[F-1] [ 1, 0, 0 ] Genus Chloroflexi[G-1] [ 1, 0, 0 ] Species Chloroflexi[G-1] sp. oral taxon 439 [ 1, 0,0 ] Phylum Firm icutes [ 233, 615, 600 ] Class Bacilli [ 93, 531, 527 ] Order Bacillales [ 15, 150, 149 ] Family Bacillaceae [ 4, 36, 36 ] Genus Bacillus [ 3, 34, 34 ] Species Bacillus anthracis [ 1, 20, 20 ] Species Bacillus clausii [ 1, 1, 1 ] Species Bacillus subtilis [ 1, 13, 13 ] Genus Lysinibacillus [ 1, 2, 2 ] Species Lysinibacillus fusiform is [ 1, 2, 2 ] Family Listeriaceae [ 1, 32, 32 ] Genus Listeria [ 1, 32, 32 ] Species Listeria m onocytogenes [ 1, 32, 32] Family Paenibacillaceae [ 2, 1, 1 ] Genus Paenibacillus [ 2, 1, 1 ] Species Paenibacillus sp. oral taxon 048 [ 1, 0, 0 ] Species Paenibacillus sp. oral taxon 786 [ 1, 1, 1 ] Family Staphylococcaceae [ 8, 81, 80 ] Genus Gem ella [ 4, 5, 4 ] Species Gem ella bergeriae [ 1, 1, 0 ] Species Gem ella haem olysans [ 1, 2, 2 ] Species Gem ella m orbillorum [ 1, 1, 1 ] Species Gem ella sanguinis [ 1, 1, 1 ] Genus Staphylococcus [ 4, 76,76 ] SpeciesStaphylococcus aureus [ 1,62, 62 ] SpeciesStaphylococcus caprae [ 1,1, 1 ] SpeciesStaphylococcus epiderm idis [ 1, 10, 10 ] SpeciesStaphylococcus w arneri [1, 3, 3 ] Order Lactobacillales [ 78, 381, 378 ] Family Aerococcaceae [ 1, 1, 1 ] Genus Abiotrophia [ 1, 1, 1 ]
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Species Abiotrophia defectiva [ 1, 1, 1 ] Family Carnobacteriaceae [ 4, 4, 4 ] Genus Alloiococcus [ 1, 1, 1 ] Species Alloiococcus otitis [ 1, 1, 1 ] Genus Dolosigranulum [ 1, 1, 1] SpeciesDolosigranulum pigrum [1, 1, 1 ] Genus Granulicatella [ 2, 2, 2 ] Species Granulicatella adiacens [ 1, 1, 1 ] Species Granulicatella elegans [ 1, 1, 1 ] Family Enterococcaceae [ 5, 36, 36 ] Genus Enterococcus [ 5, 36, 36] Species Enterococcus casseliflavus [ 1, 5, 5 ] Species Enterococcus durans [ 1, 3, 3 ] Species Enterococcus faecalis [ 1, 25, 25 ] Species Enterococcus italicus [ 1, 1, 1 ] Species Enterococcus saccharolyticus [ 1, 2, 2 ] Family Lactobacillaceae [ 25, 121, 121 ] Genus Lactobacillus [ 25, 121,121 ] Species Lactobacillus acidophilus [ 1, 6, 6 ] Species Lactobacillus brevis [ 1, 2, 2 ] Species Lactobacillus buchneri [ 1, 3, 3 ] Species Lactobacillus casei [ 1, 9, 9 ] Species Lactobacillus colehom inis [ 1, 1, 1 ] Species Lactobacillus crispatus [ 1, 10, 10 ] Species Lactobacillus ferm entum [ 1, 5, 5 ] Species Lactobacillus gasseri [ 1, 8, 8 ] Species Lactobacillus iners [ 1, 15, 15 ] Species Lactobacillus jensenii [ 1, 7, 7 ] Species Lactobacillus johnsonii [ 1, 5, 5 ] Species Lactobacillus kisonensis [ 1, 1, 1 ] Species Lactobacillus oris [ 1, 2, 2 ] Species Lactobacillus panis [ 1, 0, 0 ] Species Lactobacillus paracasei [ 1, 5, 5 ] Species Lactobacillus parafarraginis [ 1, 1, 1 ] Species Lactobacillus pentosus [ 1, 1, 1 ] Species Lactobacillus plantarum [ 1, 10, 10 ] Species Lactobacillus rapi [ 1, 0, 0 ] Species Lactobacillus reuteri [ 1, 11, 11 ] Species Lactobacillus rham nosus [ 1, 11, 11 ] Species Lactobacillus salivarius [ 1, 7, 7 ] Species Lactobacillus sp. oral taxon 052 [ 1, 0, 0 ] Species Lactobacillus sp. oral taxon 461 [ 1, 0, 0 ] Species Lactobacillus vaginalis [ 1, 1, 1 ] Family Streptococcaceae [ 43, 219, 216] Genus Lactococcus [ 1, 9, 9 ] Species Lactococcus lactis [ 1, 9, 9 ] Genus Streptococcus [ 42, 210,207 ] Species Streptococcus agalactiae [ 1, 11, 11 ] Species Streptococcus anginosus [ 1, 6, 6 ] Species Streptococcus australis [ 1, 1, 1 ] Species Streptococcus constellatus [ 1, 1, 1 ] Species Streptococcus cristatus [ 1, 2, 1 ] Species Streptococcus dow nei [ 1, 1, 1 ] Species Streptococcus gordonii [ 1, 1, 1 ] Species Streptococcus infantis [ 1, 6, 6 ] Species Streptococcus interm edius [ 1, 6, 6 ] Species Streptococcus m itis [ 1, 14, 14 ]
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Species Streptococcus m itis bv 2 [ 1, 2, 2 ] Species Streptococcus m utans [ 1, 19, 19 ] Species Streptococcus oligoferm entans [ 1, 1, 1 ] Species Streptococcus oralis [ 1, 10, 10 ] Species Streptococcus parasanguinis [ 1, 5, 5 ] Species Streptococcus parasanguinis II [ 1, 1, 1 ] Species Streptococcus peroris [ 1, 1, 1 ] Species Streptococcus pneum oniae [ 1, 73, 73 ] Species Streptococcus pyogenes [ 1, 18, 18 ] Species Streptococcus salivarius [ 1, 7, 7 ] Species Streptococcus sanguinis [ 1, 13, 13 ] Species Streptococcus sinensis [ 1, 0, 0 ] Species Streptococcus sobrinus [ 1, 3, 2 ] Species Streptococcus sp. oral taxon 055 [ 1, 0, 0 ] Species Streptococcus sp. oral taxon 056 [ 1, 1, 1 ] Species Streptococcus sp. oral taxon 057 [ 1, 0, 0 ] Species Streptococcus sp. oral taxon 058 [ 1, 1, 1 ] Species Streptococcus sp. oral taxon 061 [ 1, 0, 0 ] Species Streptococcus sp. oral taxon 064 [ 1, 0, 0 ] Species Streptococcus sp. oral taxon 065 [ 1, 0, 0 ] Species Streptococcus sp. oral taxon 066 [ 1, 1, 1 ] Species Streptococcus sp. oral taxon 067 [ 1, 0, 0 ] Species Streptococcus sp. oral taxon 068 [ 1, 0, 0 ] Species Streptococcus sp. oral taxon 069 [ 1, 0, 0 ] Species Streptococcus sp. oral taxon 070 [ 1, 1, 1 ] Species Streptococcus sp. oral taxon 071 [ 1, 2, 1 ] Species Streptococcus sp. oral taxon 074 [ 1, 0, 0 ] Species Streptococcus sp. oral taxon 423 [ 1, 0, 0 ] Species Streptococcus sp. oral taxon 431 [ 1, 0, 0 ] Species Streptococcus sp. oral taxon 486 [ 1, 0, 0 ] Species Streptococcus sp. oral taxon 487 [ 1, 0, 0 ] Species Streptococcus vestibularis [ 1, 2, 2 ] Class Clostridia [ 134, 77, 67 ] Order Clostridiales [ 134, 77, 67 ] Family Clostridiales[F-1] [ 2, 0, 0 ] Genus Clostridiales[F-1][G-1] [1, 0, 0 ] Species Clostridiales[F-1][G-1] sp. oral taxon 093 Genus Clostridiales[F-1][G-2] [1, 0, 0 ] Species Clostridiales[F-1][G-2] sp. oral taxon 402 Family Clostridiales[F-2] [ 4, 0, 0 ] Genus Clostridiales[F-2][G-1] [1, 0, 0 ] Species Clostridiales[F-2][G-1] sp. oral taxon 075 Genus Clostridiales[F-2][G-2] [1, 0, 0 ] Species Clostridiales[F-2][G-2] sp. oral taxon 085 Genus Clostridiales[F-2][G-3] [2, 0, 0 ] Species Clostridiales[F-2][G-3] sp. oral taxon 366 Species Clostridiales[F-2][G-3] sp. oral taxon 381 Family Clostridiales[F-3] [ 1, 1, 0 ] Genus Clostridiales[F-3][G-1] [1, 1, 0 ] Species Clostridiales[F-3][G-1] sp. oral taxon 876 Family Eubacteriaceae[15] [ 2, 2, 2 ] Genus Eubacterium [ 1, 1, 1 ] Species Eubacterium lim osum [ 1, 1, 1 ] Genus Pseudoram ibacter [ 1, 1,1 ] SpeciesPseudoram ibacter alactolyticus [ 1, 1, 1 ] Family Lachnospiraceae[14] [ 31, 13,11 ] Genus Butyrivibrio [ 1, 0, 0 ]
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[1, 0, 0 ] [1, 0, 0 ]

[1, 0, 0 ] [1, 0, 0 ] [1, 0, 0 ] [1, 0, 0 ]

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Species Butyrivibrio sp. oral taxon 094 [ 1, 0, 0 ] Genus Catonella [ 3, 1, 1 ] Species Catonella m orbi [ 1, 1, 1 ] Species Catonella sp. oral taxon 164 [ 1, 0, 0 ] Species Catonella sp. oral taxon 451 [ 1, 0, 0 ] Genus Johnsonella [ 2, 1, 1 ] Species Johnsonella ignava [ 1, 1, 1 ] Species Johnsonella sp. oral taxon 166 [ 1, 0, 0 ] Genus Lachnoanaerobaculum [6, 4, 4 ] SpeciesLachnoanaerobaculum orale [ 1, 1, 1 ] SpeciesLachnoanaerobaculum saburreum [ 1, 2, 2 ] SpeciesLachnoanaerobaculum sp. oral taxon 083 [ 1, 0, 0 ] SpeciesLachnoanaerobaculum sp. oral taxon 089 [ 1, 0, 0 ] SpeciesLachnoanaerobaculum sp. oral taxon 496 [ 1, 0, 0 ] SpeciesLachnoanaerobaculum um eaense [ 1, 1, 1 ] Genus Lachnospiraceae[G-2] [2, 0, 0 ] SpeciesLachnospiraceae[G-2] sp. oral taxon 088 [ 1, 0, 0 ] SpeciesLachnospiraceae[G-2] sp. oral taxon 096 [ 1, 0, 0 ] Genus Lachnospiraceae[G-3] [1, 0, 0 ] SpeciesLachnospiraceae[G-3] sp. oral taxon 100 [ 1, 0, 0 ] Genus Lachnospiraceae[G-5] [2, 0, 0 ] SpeciesLachnospiraceae[G-5] sp. oral taxon 080 [ 1, 0, 0 ] SpeciesLachnospiraceae[G-5] sp. oral taxon 455 [ 1, 0, 0 ] Genus Lachnospiraceae[G-6] [1, 0, 0 ] SpeciesLachnospiraceae[G-6] sp. oral taxon 090 [ 1, 0, 0 ] Genus Lachnospiraceae[G-7] [2, 0, 0 ] SpeciesLachnospiraceae[G-7] sp. oral taxon 086 [ 1, 0, 0 ] SpeciesLachnospiraceae[G-7] sp. oral taxon 163 [ 1, 0, 0 ] Genus Lachnospiraceae[G-8] [1, 0, 0 ] SpeciesLachnospiraceae[G-8] sp. oral taxon 500 [ 1, 0, 0 ] Genus Oribacterium [ 5, 5, 3 ] Species Oribacterium sinus [ 1, 1, 1 ] Species Oribacterium sp. oral taxon 078 [ 1, 2, 1 ] Species Oribacterium sp. oral taxon 102 [ 1, 1, 0 ] Species Oribacterium sp. oral taxon 108 [ 1, 1, 1 ] Species Oribacterium sp. oral taxon 372 [ 1, 0, 0 ] Genus Shuttlew orthia [ 1, 1, 1 ] Species Shuttlew orthia satelles [ 1, 1, 1 ] Genus Stom atobaculum [ 4, 1, 1] SpeciesStom atobaculum longum [1, 1, 1 ] SpeciesStom atobaculum sp. oral taxon 097 [ 1, 0, 0 ] SpeciesStom atobaculum sp. oral taxon 373 [ 1, 0, 0 ] SpeciesStom atobaculum sp. oral taxon 910 [ 1, 0, 0 ] Family Peptococcaceae [ 2, 0, 0 ] Genus Peptococcus [ 2, 0, 0 ] Species Peptococcus sp. oral taxon 167 [ 1, 0, 0 ] Species Peptococcus sp. oral taxon 168 [ 1, 0, 0 ] Family Peptostreptococcaceae[11] [24, 10, 9 ] Genus Eubacterium [11][G-1] [2, 2, 2 ] SpeciesEubacterium [11][G-1] infirm um [ 1, 2, 2 ] SpeciesEubacterium [11][G-1] sulci [ 1, 0, 0 ] Genus Eubacterium [11][G-3] [1, 1, 0 ] SpeciesEubacterium [11][G-3] brachy [ 1, 1, 0 ] Genus Eubacterium [11][G-5] [1, 1, 1 ] SpeciesEubacterium [11][G-5] saphenum [ 1, 1, 1 ] Genus Eubacterium [11][G-6] [2, 0, 0 ] SpeciesEubacterium [11][G-6] m inutum [ 1, 0, 0 ]
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SpeciesEubacterium [11][G-6] nodatum [ 1, 0, 0 ] Genus Eubacterium [11][G-7] [1, 1, 1 ] SpeciesEubacterium [11][G-7] yurii [ 1, 1, 1 ] Genus Filifactor [ 1, 1, 1 ] Species Filifactor alocis [ 1, 1, 1 ] Genus Mogibacterium [ 5, 0, 0 ] Species Mogibacterium diversum [ 1, 0, 0 ] Species Mogibacterium neglectum [ 1, 0, 0 ] Species Mogibacterium pum ilum [ 1, 0, 0 ] Species Mogibacterium tim idum [ 1, 0, 0 ] Species Mogibacterium vescum [ 1, 0, 0 ] GenusPeptostreptococcaceae[11][G-1] [1, 0, 0 ] SpeciesPeptostreptococcaceae[11][G-1] sp. oral taxon 383 [ 1,0, 0 ] GenusPeptostreptococcaceae[11][G-2] [1, 0, 0 ] SpeciesPeptostreptococcaceae[11][G-2] sp. oral taxon 091 [ 1,0, 0 ] GenusPeptostreptococcaceae[11][G-3] [2, 0, 0 ] SpeciesPeptostreptococcaceae[11][G-3] sp. oral taxon 382 [ 1,0, 0 ] SpeciesPeptostreptococcaceae[11][G-3] sp. oral taxon 495 [ 1,0, 0 ] GenusPeptostreptococcaceae[11][G-4] [2, 0, 0 ] SpeciesPeptostreptococcaceae[11][G-4] sp. oral taxon 103 [ 1,0, 0 ] SpeciesPeptostreptococcaceae[11][G-4] sp. oral taxon 369 [ 1,0, 0 ] GenusPeptostreptococcaceae[11][G-5] [1, 0, 0 ] SpeciesPeptostreptococcaceae[11][G-5] sp. oral taxon 493 [ 1,0, 0 ] GenusPeptostreptococcaceae[11][G-7] [2, 0, 0 ] SpeciesPeptostreptococcaceae[11][G-7] sp. oral taxon 081 [ 1,0, 0 ] SpeciesPeptostreptococcaceae[11][G-7] sp. oral taxon 106 [ 1,0, 0 ] Genus Peptostreptococcus [ 2,4, 4 ] SpeciesPeptostreptococcus anaerobius [ 1, 3, 3 ] SpeciesPeptostreptococcus stom atis [ 1, 1, 1 ] Family Peptostreptococcaceae[13] [15, 20, 19 ] Genus Anaerococcus [ 3, 4, 4 ] Species Anaerococcus Lactolyticus [ 1, 1, 1 ] Species Anaerococcus prevotii [ 1, 2, 2 ] Species Anaerococcus tetradius [ 1, 1, 1 ] Genus Finegoldia [ 1, 6, 6 ] Species Finegoldia m agna [ 1, 6, 6 ] Genus Parvim onas [ 3, 3, 3 ] Species Parvim onas m icra [ 1, 1, 1 ] Species Parvim onas sp. oral taxon 110 [ 1, 1, 1 ] Species Parvim onas sp. oral taxon 393 [ 1, 1, 1 ] Genus Peptoniphilus [ 6, 6, 6 ] Species Peptoniphilus asaccharolyticus [ 1, 0, 0 ] Species Peptoniphilus indolicus [ 1, 1, 1 ] Species Peptoniphilus lacrim alis [ 1, 2, 2 ] Species Peptoniphilus sp. oral taxon 375 [ 1, 1, 1 ] Species Peptoniphilus sp. oral taxon 386 [ 1, 1, 1 ] Species Peptoniphilus sp. oral taxon 836 [ 1, 1, 1 ] GenusPeptostreptococcaceae[13][G-1] [1, 1, 0 ] SpeciesPeptostreptococcaceae[13][G-1] sp. oral taxon 113 [ 1,1, 0 ] GenusPeptostreptococcaceae[13][G-2] [1, 0, 0 ] SpeciesPeptostreptococcaceae[13][G-2] sp. oral taxon 790 [ 1,0, 0 ] Family Syntrophom onadaceae[8] [ 1,0, 0 ] GenusSyntrophom onadaceae[8][G-1] [ 1,0, 0 ] SpeciesSyntrophom onadaceae[8][G-1] sp. oral taxon 435 [ 1,0, 0 ] Family Veillonellaceae [ 52, 31, 26 ] Genus Anaeroglobus [ 1, 1, 1 ] Species Anaeroglobus gem inatus [ 1, 1, 1 ]
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Genus Centipeda [ 1, 1, 1 ] Species Centipeda periodontii [ 1, 1, 1 ] Genus Dialister [ 5, 3, 2 ] Species Dialister invisus [ 1, 1, 1 ] Species Dialister m icraerophilus [ 1, 1, 1 ] Species Dialister pneum osintes [ 1, 1, 0 ] Species Dialister sp. oral taxon 119 [ 1, 0, 0 ] Species Dialister sp. oral taxon 502 [ 1, 0, 0 ] Genus Megasphaera [ 3, 1, 1 ] Species Megasphaera m icronuciform is [ 1, 1, 1 ] Species Megasphaera sp. oral taxon 123 [ 1, 0, 0 ] Species Megasphaera sp. oral taxon 841 [ 1, 0, 0 ] Genus Mitsuokella [ 3, 2, 1 ] Species Mitsuokella m ultacida [ 1, 1, 1 ] Species Mitsuokella sp. oral taxon 131 [ 1, 1, 0 ] Species Mitsuokella sp. oral taxon 521 [ 1, 0, 0 ] Genus Selenom onas [ 23, 12,10 ] Species Selenom onas artem idis [ 1, 1, 1 ] Species Selenom onas dianae [ 1, 1, 0 ] Species Selenom onas flueggei [ 1, 1, 1 ] Species Selenom onas infelix [ 1, 1, 1 ] Species Selenom onas noxia [ 1, 2, 2 ] Species Selenom onas sp. oral taxon 126 [ 1, 0, 0 ] Species Selenom onas sp. oral taxon 133 [ 1, 1, 1 ] Species Selenom onas sp. oral taxon 134 [ 1, 0, 0 ] Species Selenom onas sp. oral taxon 136 [ 1, 0, 0 ] Species Selenom onas sp. oral taxon 137 [ 1, 1, 1 ] Species Selenom onas sp. oral taxon 138 [ 1, 1, 1 ] Species Selenom onas sp. oral taxon 140 [ 1, 0, 0 ] Species Selenom onas sp. oral taxon 143 [ 1, 0, 0 ] Species Selenom onas sp. oral taxon 146 [ 1, 0, 0 ] Species Selenom onas sp. oral taxon 149 [ 1, 1, 1 ] Species Selenom onas sp. oral taxon 388 [ 1, 0, 0 ] Species Selenom onas sp. oral taxon 442 [ 1, 0, 0 ] Species Selenom onas sp. oral taxon 478 [ 1, 0, 0 ] Species Selenom onas sp. oral taxon 479 [ 1, 0, 0 ] Species Selenom onas sp. oral taxon 481 [ 1, 0, 0 ] Species Selenom onas sp. oral taxon 501 [ 1, 0, 0 ] Species Selenom onas sp. oral taxon 892 [ 1, 1, 0 ] Species Selenom onas sputigena [ 1, 1, 1 ] Genus Veillonella [ 7, 10, 10 ] Species Veillonella atypica [ 1, 3, 3 ] Species Veillonella denticariosi [ 1, 0, 0 ] Species Veillonella dispar [ 1, 1, 1 ] Species Veillonella parvula [ 1, 4, 4 ] Species Veillonella rogosae [ 1, 1, 1 ] Species Veillonella sp. oral taxon 780 [ 1, 1, 1 ] Species Veillonella sp. oral taxon 917 [ 1, 0, 0 ] Genus Veillonellaceae[G-1] [ 9,1, 0 ] SpeciesVeillonellaceae[G-1] sp. oral taxon 129 [ 1, 0, 0 ] SpeciesVeillonellaceae[G-1] sp. oral taxon 132 [ 1, 0, 0 ] SpeciesVeillonellaceae[G-1] sp. oral taxon 135 [ 1, 0, 0 ] SpeciesVeillonellaceae[G-1] sp. oral taxon 145 [ 1, 0, 0 ] SpeciesVeillonellaceae[G-1] sp. oral taxon 148 [ 1, 0, 0 ] SpeciesVeillonellaceae[G-1] sp. oral taxon 150 [ 1, 0, 0 ] SpeciesVeillonellaceae[G-1] sp. oral taxon 155 [ 1, 1, 0 ] SpeciesVeillonellaceae[G-1] sp. oral taxon 483 [ 1, 0, 0 ]
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SpeciesVeillonellaceae[G-1] sp. oral taxon 918 [ 1, 0, 0 ] Class Erysipelotrichi [ 6, 7, 6 ] Order Erysipelotrichales [ 6, 7, 6 ] Family Erysipelotrichaceae [ 6, 7, 6 ] Genus Bulleidia [ 1, 2, 2 ] Species Bulleidia extructa [ 1, 2, 2 ] Genus Eggerthia [ 1, 2, 1 ] Species Eggerthia catenaform is [ 1, 2, 1 ] Genus Erysipelothrichaceae[G-1] [ 2, 0, 0 ] SpeciesErysipelothrichaceae[G-1] sp. oral taxon 904 [ 1, 0, 0 ] SpeciesErysipelothrichaceae[G-1] sp. oral taxon 905 [ 1, 0, 0 ] Genus Erysipelothrix [ 1, 1, 1 ] Species Erysipelothrix tonsillarum [ 1, 1, 1 ] Genus Solobacterium [ 1, 2, 2 ] Species Solobacterium m oorei [ 1, 2, 2 ] Phylum Fusobacteria [ 37, 31, 26 ] Class Fusobacteria [ 37, 31, 26 ] Order Fusobacteriales [ 37, 31, 26 ] Family Fusobacteriaceae [ 11, 20, 20 ] Genus Fusobacterium [ 11, 20,20 ] Species Fusobacterium gonidiaform ans [ 1, 2, 2 ] Species Fusobacterium naviform e [ 1, 0, 0 ] Species Fusobacterium necrophorum [ 1, 4, 4 ] Species Fusobacterium nucleatum subsp. anim alis [ 1, 5, 5 ] Species Fusobacterium nucleatum subsp. nucleatum [ 1, 2, 2 ] Species Fusobacterium nucleatum subsp. polym orphum [ 1, 2, 2 ] Species Fusobacterium nucleatum subsp. vincentii [ 1, 1, 1 ] Species Fusobacterium periodonticum [ 1, 3, 3 ] Species Fusobacterium sp. oral taxon 203 [ 1, 0, 0 ] Species Fusobacterium sp. oral taxon 205 [ 1, 0, 0 ] Species Fusobacterium sp. oral taxon 370 [ 1, 1, 1 ] Family Leptotrichiaceae [ 26, 11, 6 ] Genus Leptotrichia [ 22, 11, 6 ] Species Leptotrichia buccalis [ 1, 2, 2 ] Species Leptotrichia goodfellow ii [ 1, 1, 1 ] Species Leptotrichia hofstadii [ 1, 1, 1 ] Species Leptotrichia hongkongensis [ 1, 0, 0 ] Species Leptotrichia shahii [ 1, 1, 1 ] Species Leptotrichia sp. oral taxon 212 [ 1, 0, 0 ] Species Leptotrichia sp. oral taxon 215 [ 1, 1, 0 ] Species Leptotrichia sp. oral taxon 217 [ 1, 0, 0 ] Species Leptotrichia sp. oral taxon 218 [ 1, 0, 0 ] Species Leptotrichia sp. oral taxon 219 [ 1, 0, 0 ] Species Leptotrichia sp. oral taxon 221 [ 1, 0, 0 ] Species Leptotrichia sp. oral taxon 223 [ 1, 0, 0 ] Species Leptotrichia sp. oral taxon 225 [ 1, 1, 0 ] Species Leptotrichia sp. oral taxon 392 [ 1, 0, 0 ] Species Leptotrichia sp. oral taxon 417 [ 1, 0, 0 ] Species Leptotrichia sp. oral taxon 462 [ 1, 0, 0 ] Species Leptotrichia sp. oral taxon 463 [ 1, 0, 0 ] Species Leptotrichia sp. oral taxon 498 [ 1, 0, 0 ] Species Leptotrichia sp. oral taxon 847 [ 1, 1, 0 ] Species Leptotrichia sp. oral taxon 879 [ 1, 1, 0 ] Species Leptotrichia sp. oral taxon 909 [ 1, 0, 0 ] Species Leptotrichia w adei [ 1, 2, 1 ] Genus Leptotrichiaceae[G-1] [2, 0, 0 ] SpeciesLeptotrichiaceae[G-1] sp. oral taxon 210 [ 1, 0, 0 ]
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SpeciesLeptotrichiaceae[G-1] sp. oral taxon 220 [ 1, 0, 0 ] Genus Sneathia [ 2, 0, 0 ] Species Sneathia am nionii [NV] [ 1, 0, 0 ] Species Sneathia sanguinegens [ 1, 0, 0 ] Phylum GN02 [ 3, 0, 0 ] Class GN02[C-1] [ 2, 0, 0 ] Order GN02[O-1] [ 2, 0, 0 ] Family GN02[F-1] [ 2, 0, 0 ] Genus GN02[G-1] [ 2, 0, 0 ] Species GN02[G-1] sp. oral taxon 871 [ 1, 0, 0 ] Species GN02[G-1] sp. oral taxon 872 [ 1, 0, 0 ] Class GN02[C-2] [ 1, 0, 0 ] Order GN02[O-2] [ 1, 0, 0 ] Family GN02[F-2] [ 1, 0, 0 ] Genus GN02[G-2] [ 1, 0, 0 ] Species GN02[G-2] sp. oral taxon 873 [ 1, 0, 0 ] Phylum Proteobacteria [ 114, 360, 356 ] Class Alphaproteobacteria [ 17, 16, 16 ] Order Caulobacterales [ 2, 2, 2 ] Family Caulobacteraceae [ 2, 2, 2 ] Genus Brevundim onas [ 1, 2, 2] SpeciesBrevundim onas dim inuta [1, 2, 2 ] Genus Caulobacter [ 1, 0, 0 ] Species Caulobacter sp. oral taxon 002 [ 1, 0, 0 ] Order Rhizobiales [ 9, 13, 13 ] Family Bartonellaceae [ 1, 0, 0 ] Genus Bartonella [ 1, 0, 0 ] Species Bartonella sp. oral taxon 001 [ 1, 0, 0 ] Family Bradyrhizobiaceae [ 4, 3, 3 ] Genus Afipia [ 3, 1, 1 ] Species Afipia broom eae [ 1, 1, 1 ] Species Afipia sp. genom ospecies 4 [ 1, 0, 0 ] Species Afipia sp. genom ospecies 8 [ 1, 0, 0 ] Genus Bradyrhizobium [ 1, 2, 2] SpeciesBradyrhizobium elkanii [ 1,2, 2 ] Family Brucellaceae [ 1, 3, 3 ] Genus Ochrobactrum [ 1, 3, 3 ] Species Ochrobactrum anthropi [ 1, 3, 3 ] Family Phyllobacteriaceae [ 1, 0, 0 ] Genus Defluvibacter [ 1, 0, 0 ] Species Defluvibacter lusatiae [ 1, 0, 0 ] Family Rhizobiaceae [ 2, 7, 7 ] Genus Agrobacterium [ 1, 6, 6 ] Species Agrobacterium tum efaciens [ 1, 6, 6 ] Genus Rhizobium [ 1, 1, 1 ] Species Rhizobium loti [ 1, 1, 1 ] Order Rhodobacterales [ 1, 1, 1 ] Family Rhodobacteraceae [ 1, 1, 1 ] Genus Rhodobacter [ 1, 1, 1 ] Species Rhodobacter capsulatus [ 1, 1, 1 ] Order Sphingom onadales [ 5, 0, 0 ] Family Sphingom onadaceae [ 5, 0, 0 ] Genus Erythrom icrobium [ 1, 0,0 ] SpeciesErythrom icrobium ram osum [ 1, 0, 0 ] Genus Sphingom onas [ 4, 0, 0 ] Species Sphingom onas sp. oral taxon 003 [ 1, 0, 0 ] Species Sphingom onas sp. oral taxon 004 [ 1, 0, 0 ]
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Species Sphingom onas sp. oral taxon 006 [ 1, 0, 0 ] Species Sphingom onas sp. oral taxon 007 [ 1, 0, 0 ] Class Betaproteobacteria [ 44, 88, 87 ] Order Burkholderiales [ 14, 29, 29 ] Family Alcaligenaceae [ 2, 12, 12 ] Genus Achrom obacter [ 1, 4, 4 ] SpeciesAchrom obacter xylosoxidans [ 1, 4, 4 ] Genus Bordetella [ 1, 8, 8 ] Species Bordetella pertussis [ 1, 8, 8 ] Family Burkholderiaceae [ 3, 2, 2 ] Genus Burkholderia [ 2, 1, 1 ] Species Burkholderia cepacia [ 1, 1, 1 ] Species Burkholderia sp. oral taxon 406 [ 1, 0, 0 ] Genus Lautropia [ 1, 1, 1 ] Species Lautropia m irabilis [ 1, 1, 1 ] Family Com am onadaceae [ 7, 12, 12 ] Genus Com am onas [ 1, 5, 5 ] Species Com am onas testosteroni [ 1, 5, 5 ] Genus Delftia [ 1, 3, 3 ] Species Delftia acidovorans [ 1, 3, 3 ] Genus Leptothrix [ 3, 0, 0 ] Species Leptothrix sp. oral taxon 024 [ 1, 0, 0 ] Species Leptothrix sp. oral taxon 025 [ 1, 0, 0 ] Species Leptothrix sp. oral taxon 026 [ 1, 0, 0 ] Genus Ottow ia [ 1, 0, 0 ] Species Ottow ia sp. oral taxon 894 [ 1, 0, 0 ] Genus Variovorax [ 1, 4, 4 ] Species Variovorax paradoxus [ 1, 4, 4 ] Family Ralstoniaceae [ 2, 3, 3 ] Genus Ralstonia [ 2, 3, 3 ] Species Ralstonia pickettii [ 1, 3, 3 ] Species Ralstonia sp. oral taxon 027 [ 1, 0, 0 ] Order Neisseriales [ 29, 59, 58 ] Family Neisseriaceae [ 29, 59, 58 ] Genus Eikenella [ 3, 1, 1 ] Species Eikenella corrodens [ 1, 1, 1 ] Species Eikenella sp. oral taxon 009 [ 1, 0, 0 ] Species Eikenella sp. oral taxon 011 [ 1, 0, 0 ] Genus Kingella [ 5, 5, 5 ] Species Kingella denitrificans [ 1, 1, 1 ] Species Kingella kingae [ 1, 3, 3 ] Species Kingella oralis [ 1, 1, 1 ] Species Kingella sp. oral taxon 012 [ 1, 0, 0 ] Species Kingella sp. oral taxon 459 [ 1, 0, 0 ] Genus Neisseria [ 20, 52, 51 ] Species Neisseria bacilliform is [ 1, 1, 1 ] Species Neisseria elongata [ 1, 1, 1 ] Species Neisseria flava [ 1, 0, 0 ] Species Neisseria flavescens [ 1, 2, 2 ] Species Neisseria gonorrhoeae [ 1, 18, 17 ] Species Neisseria lactam ica [ 1, 4, 4 ] Species Neisseria m eningitidis [ 1, 13, 13 ] Species Neisseria m ucosa [ 1, 2, 2 ] Species Neisseria oralis [ 1, 1, 1 ] Species Neisseria pharyngis [ 1, 0, 0 ] Species Neisseria polysaccharea [ 1, 2, 2 ] Species Neisseria sicca [ 1, 4, 4 ]
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Species Neisseria sp. oral taxon 015 Species Neisseria sp. oral taxon 016 Species Neisseria sp. oral taxon 018 Species Neisseria sp. oral taxon 020 Species Neisseria sp. oral taxon 499 Species Neisseria sp. oral taxon 523 Species Neisseria subflava [ 1, 1, 1 ] Species Neisseria w eaveri [ 1, 2, 2 ]

[ [ [ [ [ [

1, 0, 0 ] 1, 0, 0 ] 1, 0, 0 ] 1, 1, 1 ] 1, 0, 0 ] 1, 0, 0 ]

Genus Sim onsiella [ 1, 1, 1 ] Species Sim onsiella m uelleri [ 1, 1, 1 ] Order Rhodocyclales [ 1, 0, 0 ] Family Rhodocyclaceae [ 1, 0, 0 ] Genus Rhodocyclus [ 1, 0, 0 ] Species Rhodocyclus sp. oral taxon 028 [ 1, 0, 0 ] Class Deltaproteobacteria [ 5, 4, 4 ] Order Bdellovibrionales [ 1, 0, 0 ] Family Bdellovibrionacae [ 1, 0, 0 ] Genus Bdellovibrio [ 1, 0, 0 ] Species Bdellovibrio sp. oral taxon 039 [ 1, 0, 0 ] Order Desulfobacterales [ 1, 4, 4 ] Family Desulfobulbaceae [ 1, 4, 4 ] Genus Desulfobulbus [ 1, 4, 4 ] Species Desulfobulbus sp. oral taxon 041 [ 1, 4, 4 ] Order Desulfovibrionales [ 3, 0, 0 ] Family Desulfom icrobiaceae [ 1, 0, 0 ] Genus Desulfom icrobium [ 1, 0,0 ] SpeciesDesulfom icrobium orale [1, 0, 0 ] Family Desulfovibrionaceae [ 2, 0, 0 ] Genus Desulfovibrio [ 2, 0, 0 ] Species Desulfovibrio fairfieldensis [ 1, 0, 0 ] Species Desulfovibrio sp. oral taxon 040 [ 1, 0, 0 ] Class Epsilonproteobacteria [ 9, 27, 26 ] Order Cam pylobacterales [ 9, 27, 26 ] Family Cam pylobacteraceae [ 8, 13, 12] Genus "Bacteroides" [ 1, 0, 0 ] Species "Bacteroides" ureolyticus [ 1, 0, 0 ] Genus Cam pylobacter [ 7, 13,12 ] Species Cam pylobacter concisus [ 1, 2, 2 ] Species Cam pylobacter curvus [ 1, 2, 2 ] Species Cam pylobacter gracilis [ 1, 2, 2 ] Species Cam pylobacter rectus [ 1, 3, 2 ] Species Cam pylobacter show ae [ 1, 4, 4 ] Species Cam pylobacter sp. oral taxon 044 [ 1, 0, 0 ] Species Cam pylobacter sputorum [ 1, 0, 0 ] Family Helicobacteraceae [ 1, 14, 14 ] Genus Helicobacter [ 1, 14, 14 ] Species Helicobacter pylori [ 1, 14, 14 ] Class Gam m aproteobacteria [ 39, 225, 223 ] Order Cardiobacteriales [ 2, 2, 2 ] Family Cardiobacteriaceae [ 2, 2, 2 ] Genus Cardiobacterium [ 2, 2, 2] SpeciesCardiobacterium hom inis [1, 1, 1 ] SpeciesCardiobacterium valvarum [ 1, 1, 1 ] Order Enterobacteriales [ 8, 103, 102 ] Family Enterobacteriaceae [ 8, 103, 102] Genus Enterobacter [ 3, 5, 5 ] Species Enterobacter cancerogenus [ 1, 1, 1 ]
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Species Enterobacter horm aechei [ 1, 3, 3 ] Species Enterobacter sakazakii [ 1, 1, 1 ] Genus Escherichia [ 1, 56, 56 ] Species Escherichia coli [ 1, 56, 56 ] Genus Klebsiella [ 1, 9, 9 ] Species Klebsiella pneum oniae [ 1, 9, 9 ] Genus Kluyvera [ 1, 1, 0 ] Species Kluyvera ascorbata [ 1, 1, 0 ] Genus Proteus [ 1, 6, 6 ] Species Proteus m irabilis [ 1, 6, 6 ] Genus Yersinia [ 1, 26, 26 ] Species Yersinia pestis [ 1, 26, 26 ] Order Pasteurellales [ 17, 59, 58 ] Family Pasteurellaceae [ 17, 59, 58 ] Genus Aggregatibacter [ 8, 25,24 ] SpeciesAggregatibacter actinom ycetem com itans [1, 20, 20 ] SpeciesAggregatibacter aphrophilus [ 1, 3, 3 ] SpeciesAggregatibacter paraphrophilus [ 1, 0, 0 ] SpeciesAggregatibacter segnis [1, 1, 1 ] SpeciesAggregatibacter sp. oral taxon 458 [ 1, 1, 0 ] SpeciesAggregatibacter sp. oral taxon 512 [ 1, 0, 0 ] SpeciesAggregatibacter sp. oral taxon 513 [ 1, 0, 0 ] SpeciesAggregatibacter sp. oral taxon 898 [ 1, 0, 0 ] Genus Haem ophilus [ 8, 34, 34 ] Species Haem ophilus aegyptius [ 1, 1, 1 ] Species Haem ophilus ducreyi [ 1, 1, 1 ] Species Haem ophilus haem olyticus [ 1, 7, 7 ] Species Haem ophilus influenzae [ 1, 21, 21 ] Species Haem ophilus parainfluenzae [ 1, 4, 4 ] Species Haem ophilus sp. oral taxon 035 [ 1, 0, 0 ] Species Haem ophilus sp. oral taxon 036 [ 1, 0, 0 ] Species Haem ophilus sp. oral taxon 908 [ 1, 0, 0 ] Genus Terrahaem ophilus [ 1, 0,0 ] SpeciesTerrahaem ophilus arom aticivorans [ 1, 0, 0 ] Order Pseudom onadales [ 10, 51, 51 ] Family Moraxellaceae [ 4, 20, 20 ] Genus Acinetobacter [ 2, 9, 9 ] Species Acinetobacter baum annii [ 1, 9, 9 ] Species Acinetobacter sp. oral taxon 408 [ 1, 0, 0 ] Genus Moraxella [ 2, 11, 11 ] Species Moraxella catarrhalis [ 1, 11, 11 ] Species Moraxella osloensis [ 1, 0, 0 ] Family Pseudom onadaceae [ 6, 31, 31] Genus Pseudom onas [ 6, 31, 31] Species Pseudom onas aeruginosa [ 1, 14, 14 ] Species Pseudom onas fluorescens [ 1, 8, 8 ] Species Pseudom onas otitidis [ 1, 0, 0 ] Species Pseudom onas pseudoalcaligenes [ 1, 2, 2] Species Pseudom onas sp. oral taxon 032 [ 1, 0, 0 ] Species Pseudom onas stutzeri [ 1, 7, 7 ] Order Xanthom onadales [ 2, 10, 10 ] Family Xanthom onadaceae [ 2, 10, 10 ] Genus Stenotrophom onas [ 1,10, 10 ] SpeciesStenotrophom onas m altophilia [ 1, 10, 10 ] Genus Xanthom onas [ 1, 0, 0 ] Species Xanthom onas sp. oral taxon 037 [ 1, 0, 0 ] Phylum Spirochaetes [ 49, 36, 27 ]
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Class Spirochaetes [ 49, 36, 27 ] Order Spirochaetales [ 49, 36, 27 ] Family Spirochaetaceae [ 49, 36, 27 ] Genus Treponem a [ 49, 36, 27 ] Species Treponem a am ylovorum [ 1, 0, 0 ] Species Treponem a denticola [ 1, 17, 12 ] Species Treponem a lecithinolyticum [ 1, 2, 1 ] Species Treponem a m altophilum [ 1, 1, 1 ] Species Treponem a m edium [ 1, 1, 1 ] Species Treponem a pallidum [ 1, 9, 9 ] Species Treponem a parvum [ 1, 1, 0 ] Species Treponem a pectinovorum [ 1, 1, 0 ] Species Treponem a putidum [ 1, 0, 0 ] Species Treponem a socranskii [ 1, 2, 1 ] Species Treponem a sp. oral taxon 226 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 227 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 228 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 230 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 231 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 232 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 234 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 235 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 236 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 237 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 238 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 239 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 242 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 246 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 247 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 249 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 250 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 251 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 252 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 253 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 254 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 255 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 256 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 257 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 258 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 260 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 262 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 263 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 264 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 265 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 268 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 269 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 270 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 271 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 490 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 508 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 517 [ 1, 0, 0 ] Species Treponem a sp. oral taxon 518 [ 1, 0, 0 ] Species Treponem a vincentii [ 1, 2, 2 ] Phylum SR1 [ 3, 0, 0 ] Class SR1[C-1] [ 3, 0, 0 ] Order SR1[O-1] [ 3, 0, 0 ] Family SR1[F-1] [ 3, 0, 0 ]
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Genus SR1[G-1] [ 3, 0, 0 ] Species SR1[G-1] sp. oral taxon 345 [ 1, 0, 0 ] Species SR1[G-1] sp. oral taxon 874 [ 1, 0, 0 ] Species SR1[G-1] sp. oral taxon 875 [ 1, 0, 0 ] Phylum Synergistetes [ 10, 9, 8 ] Class Synergistetes[C-1] [ 10, 9, 8 ] Order Synergistetes[O-1] [ 10, 9, 8 ] Family Synergistetes[F-1] [ 2, 8, 7 ] Genus Jonquetella [ 1, 3, 3 ] Species Jonquetella anthropi [ 1, 3, 3 ] Genus Pyram idobacter [ 1, 5, 4] SpeciesPyram idobacter piscolens [ 1, 5, 4 ] Family Synergistetes[F-2] [ 8, 1, 1 ] Genus Fretibacterium [ 8, 1, 1 ] Species Fretibacterium fastidiosum [ 1, 1, 1 ] Species Fretibacterium sp. oral taxon 358 [ 1, 0, 0 ] Species Fretibacterium sp. oral taxon 359 [ 1, 0, 0 ] Species Fretibacterium sp. oral taxon 360 [ 1, 0, 0 ] Species Fretibacterium sp. oral taxon 361 [ 1, 0, 0 ] Species Fretibacterium sp. oral taxon 362 [ 1, 0, 0 ] Species Fretibacterium sp. oral taxon 452 [ 1, 0, 0 ] Species Fretibacterium sp. oral taxon 453 [ 1, 0, 0 ] Phylum Tenericutes [ 11, 17, 17 ] Class Mollicutes [ 11, 17, 17 ] Order Mollicutes[O-1] [ 1, 0, 0 ] Family Mollicutes[F-1] [ 1, 0, 0 ] Genus Mollicutes[G-1] [ 1, 0, 0 ] Species Mollicutes[G-1] sp. oral taxon 504 [ 1, 0, 0 ] Order Mollicutes[O-2] [ 1, 0, 0 ] Family Mollicutes[F-2] [ 1, 0, 0 ] Genus Mollicutes[G-2] [ 1, 0, 0 ] Species Mollicutes[G-2] sp. oral taxon 906 [ 1, 0, 0 ] Order Mycoplasm atales [ 9, 17, 17 ] Family Mycoplasm ataceae [ 9, 17, 17 ] Genus Mycoplasm a [ 9, 17, 17 ] Species Mycoplasm a buccale [ 1, 0, 0 ] Species Mycoplasm a faucium [ 1, 0, 0 ] Species Mycoplasm a ferm entans [ 1, 3, 3 ] Species Mycoplasm a genitalium [ 1, 6, 6 ] Species Mycoplasm a hom inis [ 1, 2, 2 ] Species Mycoplasm a lipophilum [ 1, 0, 0 ] Species Mycoplasm a orale [ 1, 1, 1 ] Species Mycoplasm a pneum oniae [ 1, 5, 5 ] Species Mycoplasm a salivarium [ 1, 0, 0 ] Phylum TM7 [ 12, 3, 3 ] Class TM7[C-1] [ 12, 3, 3 ] Order TM7[O-1] [ 12, 3, 3 ] Family TM7[F-1] [ 10, 3, 3 ] Genus TM7[G-1] [ 7, 3, 3 ] Species TM7[G-1] sp. oral taxon 346 [ 1, 0, 0 ] Species TM7[G-1] sp. oral taxon 347 [ 1, 0, 0 ] Species TM7[G-1] sp. oral taxon 348 [ 1, 3, 3 ] Species TM7[G-1] sp. oral taxon 349 [ 1, 0, 0 ] Species TM7[G-1] sp. oral taxon 352 [ 1, 0, 0 ] Species TM7[G-1] sp. oral taxon 353 [ 1, 0, 0 ] Species TM7[G-1] sp. oral taxon 488 [ 1, 0, 0 ] Genus TM7[G-2] [ 1, 0, 0 ]
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Species TM7[G-2] sp. oral taxon 350 [ 1, 0, 0 ] Genus TM7[G-3] [ 1, 0, 0 ] Species TM7[G-3] sp. oral taxon 351 Genus TM7[G-4] [ 1, 0, 0 ] Species TM7[G-4] sp. oral taxon 355 Family TM7[F-2] [ 2, 0, 0 ] Genus TM7[G-5] [ 2, 0, 0 ] Species TM7[G-5] sp. oral taxon 356 Species TM7[G-5] sp. oral taxon 437
[ 1, 0, 0 ] [ 1, 0, 0 ]

[ 1, 0, 0 ] [ 1, 0, 0 ]

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