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JOURNAL OF VIROLOGY, Sept. 2008, p. 8339–8348 Vol. 82, No.

17
0022-538X/08/$08.00⫹0 doi:10.1128/JVI.00808-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Development of Reverse Genetics Systems for Bluetongue Virus:


Recovery of Infectious Virus from Synthetic RNA Transcripts䌤
Mark Boyce, Cristina C. P. Celma, and Polly Roy*
Department of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, Keppel Street,
London WC1E 7HT, United Kingdom
Received 15 April 2008/Accepted 30 May 2008

Bluetongue virus (BTV), an insect-vectored emerging pathogen of both wild ruminants and livestock, has
had a severe economic impact in agriculture in many parts of the world. The investigation of BTV replication
and pathogenesis has been hampered by the lack of a reverse genetics system. Recovery of infectious BTV is
possible by the transfection of permissive cells with the complete set of 10 purified viral mRNAs derived in vitro
from transcribing cores (M. Boyce and P. Roy, J. Virol. 81:2179–2186, 2007). Here, we report that in vitro
synthesized T7 transcripts, derived from cDNA clones, can be introduced into the genome of BTV using a
mixture of T7 transcripts and core-derived mRNAs. The replacement of genome segment 10 and the simul-
taneous replacement of segments 2 and 5 encoding the two immunologically important outer capsid proteins,
VP2 and VP5, are described. Further, we demonstrate the recovery of infectious BTV entirely from T7
transcripts, proving that synthetic transcripts synthesized in the presence of cap analogue can functionally
substitute for viral transcripts at all stages of the BTV replication cycle. The generation of BTV with a fully
defined genome permits the recovery of mutations in a defined genetic background. The ability to generate
specific mutants provides a new tool to investigate the BTV replication cycle as well as permitting the
generation of designer vaccine strains, which are greatly needed in many countries.

Bluetongue disease causes high morbidity and can cause up viral mRNAs from core particles into permissive cells is
to 75% mortality in domestic livestock (5). Bluetongue virus sufficient to initiate an infection (1).
(BTV), the etiological agent of the disease, is transmitted be- The introduction of defined mutations into the genomes
tween hosts by several species of biting midges of the Culi- of many viruses has enabled rational approaches to the
coides genus, which determine its geographic range (27). The molecular dissection of viral gene products and noncoding
virus has a global distribution and is endemic in many tropical sequences. Among RNA viruses, initially viruses with a pos-
and subtropical regions including the United States, Central itive-sense genome were recovered from plasmid DNA, such
America, parts of South America, Africa, Southeast Asia, and as bacteriophage Q␤ and poliovirus (23, 32). Later, viruses
northern Australia, with a more recent emergence into Europe with negative-sense genomes such as measles virus, influ-
(5, 8, 14–16, 22, 25, 31, 39, 40; also press release from enza virus, and bunyaviruses were recovered entirely from
the World Organisation for Animal Health, Paris, France, cDNA clones (2, 18, 19, 24). In recent years the introduction
25 August 2006, http://www.oie.int/eng/press/en_060823.htm). of plasmid-derived sequence into the dsRNA genomes of
BTV belongs to the Orbivirus genus of the Reoviridae the Reoviridae has become possible for the Orthoreovirus
family and has a segmented genome consisting of 10 linear genus and, to a limited extent, for the Rotavirus genus (9, 10,
double-stranded RNA (dsRNA) molecules (33, 36). The 26). Here, we report the first manipulation of a member of
genome segments are classified from segment 1 to segment the Orbivirus genus (BTV) at the sequence level, using a new
10 in decreasing order of size. The virus particle has a
approach among dsRNA virus reverse genetics systems
layered structure, the outer layer of which is lost before the
based entirely on in vitro synthesized RNA transcripts. The
remaining core particle enters the cytoplasm of the host cell
approach taken extends the discovery that BTV transcripts
(13, 34, 35). While the viral genomic dsRNAs never leave
are infectious on transfection of permissive cells (1) by the
the core particle, the core particle itself is transcriptionally
addition of one or more plasmid-derived T7 transcripts. The
active, synthesizing and extruding multiple capped single-
reassortment method described is applicable to any genome seg-
stranded mRNA copies of each viral genome segment into
ment of BTV and requires the construction of a single clone or
the host cell cytoplasm (13, 34, 35). These transcripts have
the dual roles of encoding the viral proteins and serving as PCR product for each genome segment being recovered. We
templates for the synthesis of the new viral dsRNA genome report the introduction of a marker sequence into the genome of
segments present in progeny virus particles. We have re- BTV and the simultaneous replacement of the serotype-specific
cently shown that the transfection of in vitro synthesized protein VP2 and the entry protein VP5 with proteins from a
different serotype. Furthermore, the recovery of BTV entirely
from plasmid-derived T7 transcripts was investigated and found
* Corresponding author. Mailing address: London School of Hy- to be viable means of generating BTV with a fully defined ge-
giene and Tropical Medicine, Keppel St., London, WC1E 7HT, United
nome. This method permits the recovery of mutants in a consis-
Kingdom. Phone: 44 20 79272324. Fax: 44 20 79272839. E-mail: polly
.roy@lshtm.ac.uk. tent genetic background with no screening required to remove

Published ahead of print on 18 June 2008. wild-type virus.

8339
8340 BOYCE ET AL. J. VIROL.

MATERIALS AND METHODS Transfection of cultured cells to recover BTV entirely from cDNA-derived
genome segments. A total of 300 to 400 ng of each T7 BTV transcript was mixed
Cell lines and virus. BSR cells (a clone of BHK-21) were cultured in Dulbec-
as described above to produce a complete genome set of T7 BTV transcripts.
co’s modified Eagle’s medium supplemented with 5% (vol/vol) fetal bovine
Transfection of BSR monolayers was performed as described above.
serum (FBS) at 35°C in 5% CO2. BTV stocks were generated by infecting BSR
Preparation of dsRNA from transfection-derived BTV plaques. Each plaque
cells at a multiplicity of infection of 0.1 and harvesting the medium at 3 to 4 days was picked into 500 ␮l of Dulbecco’s modified Eagle’s medium–5% FBS, and 200
postinfection. Viral stocks were stored at 4°C. ␮l was used to infect 1.5 ⫻ 106 BSR cells. Infected cells were incubated at 35°C
Purification of BTV core particles. BSR cultures were infected with BTV at a in 5% CO2 for 72 to 96 h to allow amplification of the BTV. Viral dsRNA was
multiplicity of infection of 0.02 to 0.1. Transcriptionally active BTV-1 core purified from infected BSR cells as previously described (1).
particles were purified as previously described and stored at 4°C (1). Screening transfection-derived BTV plaques for reassortants containing the
Synthesis and purification of BTV mRNA in vitro. BTV core particles were introduced genome segments. Where the genome segment being introduced
incubated at 40 ␮g/ml at 30°C for 5 to 6 h in BTV core transcription buffer (100 migrated at a different rate on polyacrylamide gels, screening was done by
mM Tris-HCl, pH 8.0, 4 mM ATP, 2 mM GTP, 2 mM CTP, 2 mM UTP, 500 ␮M electrophoresis of the dsRNA on 9% polyacrylamide gels in Tris-glycine buffer
S-adenosylmethionine, 6 mM dithiothreitol, 9 mM MgCl2, 0.5U/␮l RNasin Plus (pH 8.3). Gels were poststained for 30 min with ethidium bromide. Where
[Promega]). BTV core-derived mRNAs were purified using a previously de- screening was not possible on the basis of the migration rate, RT-PCR followed
scribed method and stored at ⫺80°C (1). by restriction endonuclease digestion was used to discriminate between reassor-
Reverse transcription-PCR (RT-PCR) amplification of BTV-1 genome seg- tants and wild-type BTV. cDNA was synthesized from 100 ng of heat-denatured
ments. cDNA copies of each BTV type 1 (BTV-1) genome segment were am- viral dsRNA with SuperScript III (Invitrogen), using forward and reverse prim-
plified from viral dsRNA in a sequence-independent manner using the method ers flanking the target region, at 55°C for 1 h. The target region was PCR
of full-length amplification of cDNAs (FLAC) (12). Briefly, the hairpin anchor amplified using Taq DNA polymerase with the same forward and reverse primers
and digested with restriction endonucleases. Products were resolved by electro-
primer was ligated to viral dsRNA as described previously, followed by cDNA
phoresis in agarose gels containing ethidium bromide in Tris-borate-EDTA
synthesis from gel-purified genome segments with SuperScript III (Invitrogen) at
buffer. Sequence analysis of RT-PCR products was done using dye terminators
a concentration of 10 U/␮l and 55°C for 1 h. PCR amplification was performed
on ABI 3730XL sequencing machines using the Value Read service of MWG
using 5⬘ phosphorylated FLAC 2 primer (5⬘GAGTTAATTAAGCGGCCGCAG
Biotech (30).
TTTAGAATCCTCAGAGGTC3⬘) with KOD Hot Start DNA Polymerase (No-
Construction of pNS3Hae and pBTV1S8Bgl. pNS3BsmBI was altered to con-
vagen). PacI and NotI sites are in bold type. tain an additional HaeII site by site-directed mutagenesis using primers
T7 plasmid clones used for the synthesis of BTV transcripts. cDNA plasmid S10_mt_Hae_409F and S10_mt_Hae_409R by the method of Weiner et al. (37).
clones were constructed for BTV-10 genome segment 10 (pNS3BsmBI), segment Similarly the wild-type BTV-1 S8 clone was altered to introduce a BglII site using
5 (pVP5BsmBI), and segment 2 (pVP2BsmBI), and for all 10 segments of the primers 5⬘BTV1_S8_BglII and 3⬘BTV1_S8_BglII. Clones were screened for the
BTV-1 genome. A mutant version of the BTV-10 segment 10 clone containing an presence of the introduced site by HaeII or BglII digestion, and the expression
introduced HaeII site (pNS3Hae) and a mutant version of the BTV-1 segment 8 cassette was sequenced to identify clones containing no adventitious mutations
clone containing an introduced BglII site (pBTV1S8Bgl) were also constructed. using the Value Read service of MWG Biotech.
The functional cassette in each plasmid clone contained a T7 promoter and a Primers. Mutagenic primers used to generate pNS3Hae from pNS3BsmBI
BsmBI, BsaI, or BpiI site, with the BTV genome segment located between these were the following: S10_mt_Hae_409F (5⬘CTACTAGTGGCTGCTGTGGT
elements. The BTV genome segment in each clone was positioned relative to the AGCGCTGCTGACATCAGTTTG3⬘) and S10_mt_Hae_409R (5⬘CAAACT
other two sequence elements such that the T7 transcript derived from plasmid GATGTCAGCAGCGCTACCACAGCAGCCACTAGTAG3⬘). Mutagenic prim-
digested with BsmBI, BsaI, or BpiI was predicted to have exactly the same ers used to generate pBTV1S8Bgl from the wild-type BTV-1 S8 clone were
sequence as the mRNA strand of the corresponding BTV genome segment 5⬘BTV1_S8_BglII (5⬘GATTTACCAGGTGTGATGAGATCTAACTACGATG
(Fig. 2A). TTCGTGAAC3⬘) and 3⬘BTV1_S8_BglII (5⬘CGAACATCGTAGTTAGATCTC
Synthesis of BTV transcripts from cDNA plasmid clones. T7 plasmid clones ATCACACCTGGTAAATCGGGC3⬘). The mutagenic bases are underlined,
and the restriction sites are in bold type.
were digested with BsmBI, BsaI, or BpiI and then extracted once with phenol-
Primers for the RT-PCR amplification and sequencing of BTV-10 segment
chloroform and once with chloroform. Each digested plasmid was precipitated
10 were the following: BTV10_S10_238F (5⬘-GGAGAAGGCTGCATTCGCA
with isopropanol in the presence of 0.15 M sodium acetate. DNA pellets were
TCG-3⬘), BTV10_S10_654R (5⬘-CTCATCCTCACTGCGTCATTATATGATTGT
washed twice in 70% (vol/vol) ethanol and dissolved at 1 ␮g/␮l in 10 mM
TTTTTCATCACTTC-3⬘), BTV10_S10_259F (5⬘-GGAGAAGGCTGCATTCGC
Tris-HCl, pH 8.0. Transcripts with a 5⬘ cap analogue were generated from the ATCG-3⬘), and BTV10_S10_611R (5⬘-CTCATCCTCACTGCGTCATTATATGA
digested T7 plasmid clones using a mMESSAGE mMACHINE T7 Ultra Kit TTGTTTTTTCATCACTTC-3⬘).
(Ambion), using a 4:1 ratio of anti-reverse cap analogue to rGTP. T7 BTV Primers for RT-PCR amplification from BTV-10 segment 5 were BTV10_
transcripts were extracted once with phenol-chloroform, followed by one extrac- M5_724F (5⬘-ATGACAGCAGACGTGCTAGAGGCGGCATC-3⬘) and
tion with chloroform. Unincorporated ribonucleoside triphosphates were re- BTV10_M5_1590R (5⬘-GCGTTCAAGCATTTCGTAAGAAGAG-3⬘).
moved by size fractionation using Microspin G-25 columns (GE Healthcare) Primers for RT-PCR amplification from BTV-10 segment 2 were BTV10_
according to the manufacturer’s instructions. The T7 BTV transcripts were L2_727F (5⬘-CCGTACGAACGATTTATATCCAGC-3⬘) and BTV10_L2_
precipitated with an equal volume of isopropanol in the presence of 0.15 M 1523R (5⬘-TACTAATTCAGAACGCGCGCC-3⬘).
sodium acetate. RNA pellets were washed twice in 70% (vol/vol) ethanol, dis- Primers for RT-PCR amplification of BTV-1 segment 8 were NS2_Bam_T7_F
solved in sterile diethylpyrocarbonate-treated water, and stored at ⫺80°C. (5⬘-CGGGATCCTAATACGACTCACTATAGTTAAAAAATCCTTGAGT
Denaturing agarose gel electrophoresis. Purified BTV single-stranded RNA CA-3⬘) and NS2_Bam_R (5⬘-CATGGGATCCGGACCGTCTCCGTAAGTGT
(ssRNA) was analyzed by electrophoresis on 1% agarose in morpholinepro- AAAATCCCC-3⬘). The primer used for sequencing BTV-1 segment 8 was
panesulfonic acid electrophoresis buffer in the presence of formaldehyde BTV1_S8_627R (5⬘CAGCTTCTCCAATCTGCTGG3⬘).
using standard techniques (29).
Transfection of cultured cells to recover BTV with one or two cDNA-derived
genome segments. BTV mRNAs derived from transcribing cores were mixed RESULTS
with one or more T7 BTV transcripts in Opti-MEM I in the presence of 0.1
U/␮l RNasin Plus (Promega). The RNA mixture was incubated at 20°C for 30 Reassortment of genome segments by cotransfection with
min before being mixed with Lipofectamine 2000 reagent (Invitrogen) (see BTV mRNA from two serotypes. The recovery of infectious
below). Confluent BSR monolayers in six-well plates were transfected with BTV from core-derived transcripts through the transfection of
1.5 ␮g of BTV mRNA mixed with 0.75 ␮g of each T7 BTV transcript using permissive cells has been demonstrated (1). With the aim of
Lipofectamine 2000 reagent according to the manufacturer’s instructions. At
producing a reverse genetics system for BTV, the introduction
4 h posttransfection the culture medium was replaced with a 6-ml overlay
consisting of minimal essential medium, 2% FBS, and 1.5% (wt/vol) agarose of genome segments from one BTV serotype into another was
type VII (Sigma). Assays were incubated at 35°C in 5% CO2 for 72 to 96 h to investigated as an intermediate step prior to the introduction
allow plaques to appear. of cDNA-derived genome segments. Infectious core-derived
VOL. 82, 2008 BTV FROM SYNTHETIC RNA 8341

strategy for the introduction of genome segments from a sep-


arate source into the BTV genome.
The introduction of a BTV segment derived from a cDNA
clone into the BTV-1 genome. The targeted replacement of a
genome segment with a T7 transcript derived from a cDNA
clone was subsequently investigated as a model for the intro-
duction of cloned sequences into the BTV genome. The intro-
duction of the BTV-10 segment 10 T7 transcript into the ge-
nome of BTV-1 was chosen to allow the rapid screening of
plaques based on the fast migration rate of segment 10 of
BTV-10 compared to BTV-1 on polyacrylamide gels. The
BTV-10 segment 10 T7 transcript was produced from
pNS3BsmBI, which has a T7 promoter to generate the correct
5⬘ end sequence and a BsmBI site to generate the correct 3⬘
end sequence (Fig. 2A). BTV-1 transcripts produced from
transcribing core particles were mixed with the BTV-10 seg-
ment 10 T7 transcript and used to transfect confluent BSR
monolayers. A 5:1 molar ratio of T7 transcript to the corre-
FIG. 1. Reassortant progeny genomes recovered from the co-
sponding core-derived mRNA was found to be best and was
transfection of BSR cells with core-derived transcripts from two
serotypes of BTV. Genomic dsRNA was run on 9% nondenaturing used in all experiments. Increasing the ratio of T7 transcript to
polyacrylamide gels. (A) dsRNA from rescued BTV derived by the BTV-1 transcripts reduced the total number of plaques recov-
cotransfection of BSR cells with cotranscribed BTV-1 and BTV-9 ered (data not shown). Typically ⬃50 plaques were recovered
transcripts. Lanes 1 to 3, plaque-purified viruses containing genome from each well following the transfection of a six-well dish with
segments from both parental transcript preparations. Arrows indi-
cate segments from the parent which has contributed the least 1.5 ␮g of core-derived transcripts plus 0.75 ␮g of T7 transcript.
number of segments. BTV-1 dsRNA and BTV-9 dsRNA marker Virus was amplified from these plaques, and the dsRNA was
lanes are indicated. (B) dsRNA from rescued BTV derived by the purified. The origin of genome segment 10 was initially deter-
cotransfection of BSR cells with BTV-1 and BTV-9 transcripts mined by electrophoresis of the dsRNA on polyacrylamide
mixed after preparation. Lanes 1 and 2, plaque-purified viruses
gels. dsRNA genome profiles containing the faster migrating
containing genome segments from both parental transcript prepa-
rations. Arrows indicate segments from the parent which has con- segment 10 from BTV-10 were obtained with a sufficiently high
tributed the least number of segments. BTV-1 dsRNA and BTV-9 frequency (15 to 80%) to make screening of plaques a viable
dsRNA marker lanes are indicated. option (Fig. 2B). The identity of segment 10 was confirmed
using RT-PCR, followed by sequencing of a region showing
variation between type 1 and type 10 (Fig. 2C, D, and E).
These data demonstrated the recovery of the plasmid-derived
transcripts were prepared from BTV-1 and BTV-9 as previ- BTV-10 segment 10 into the genome of viable BTV-1.
ously described (1). The transcripts from the two serotypes BTV naturally produces reassorted progeny genomes when
were either generated simultaneously in the same transcription a cell is infected with two different strains (7). To exclude the
reaction or prepared separately and then mixed. Confluent possibility that natural reassortment between two viruses was
BSR monolayers were transfected with the transcript mixtures, the origin of the segment 10 reassortants, a BTV-10 segment
and virus was amplified from the resulting plaques. The 10 clone containing an introduced silent HaeII site (pNS3Hae)
dsRNA was purified from each amplified plaque, and the or- as a marker was made by the site-directed mutagenesis of
igin of genome segments was determined by electrophoresis on pNS3BsmBI. BSR monolayers were transfected with a mixture
nondenaturing polyacrylamide gels, which allow the discrimi- of BTV-1 core-derived mRNAs and the BTV-10 segment 10
nation of some genome segments from different isolates. When T7 transcript containing the introduced mutation, derived
cosynthesized transcripts from BTV-1 and BTV-9 were used, from pNS3Hae. The recovery of virus containing this mutant
progeny viruses were generated that had genome segments BTV-10 segment 10 sequence was initially screened for by its
from both parental sources of transcripts (reassortants). In Fig. increased migration rate on polyacrylamide gels (Fig. 3A). The
1A, lane 1 contains a reassortant which has segment 1 and introduction of the HaeII site into segment 10 of the BTV
segment 4 of BTV-1 in a genetic background of segments genome was confirmed by RT-PCR of dsRNA from plaque-
which migrate as BTV-9. Similarly, lane 2 contains a reassor- purified virus followed by HaeII digestion (Fig. 3B) and by
tant with the segment 3 of BTV-9 in a BTV-1 genetic back- sequencing of the RT-PCR product (Fig. 3C and D). By se-
ground, and lane 3 contains a reassortant with segment 1 of quencing a full-length RT-PCR product, segment 10 was de-
BTV-9 in a BTV-1 genetic background. When BTV-1 and termined to be the same as the segment encoded in pNS3Hae
BTV-9 transcripts were prepared separately and mixed prior to throughout its length (data not shown).
transfection, reassortant progeny viruses were also generated, The simultaneous introduction of two BTV-10 segments de-
indicating that cosynthesis of transcripts is not necessary for rived from cDNA clones into the BTV-1 genome. To assess the
reassortment to occur (Fig. 1B). The frequency at which reas- possibility of simultaneously altering two genome segments,
sortant progeny were generated was approximately 7 to 10% the introduction of the outer capsid protein encoding segments
for both types of transcripts used. These data demonstrated (segments 2 and 5) from BTV-10 into a background of BTV-1
that cotransfection with a mixture of viral transcripts is a viable genome segments was investigated. Replacement of these ge-
8342 BOYCE ET AL. J. VIROL.

FIG. 2. Reassortant progeny genomes containing the plasmid-derived BTV-10 segment 10. (A) T7 plasmids contain the full-length BTV
genome segment flanked by a T7 promoter and a BsmBI, BsaI, or BpiI restriction enzyme site which defines the BTV 3⬘ end sequence during
transcription. The sequences at the 5⬘ and 3⬘ ends of the BTV genome segment and the flanking sequences are indicated; T7 promoter (italicized),
the conserved BTV genome segment 5⬘ and 3⬘ end sequences (bold), and the BsmBI site (underlined) are shown. (B) Genomic dsRNA run on
a 9% nondenaturing polyacrylamide gel, extracted from BTV recovered from the cotransfection of BSR cells with BTV-10 segment 10 T7 transcript
and core-derived BTV-1 transcripts. Reassortants are shown in lanes 1, 2, and 5, with arrows indicating the faster-migrating BTV-10 segment 10
genome segment. Lanes 3 and 4 show results for wild-type BTV-1. BTV-1 dsRNA and BTV-10 dsRNA marker lanes are indicated. (C to E)
Sequence electropherograms of segment 10 RT-PCR products. Segment 10 target sequences from total viral dsRNA were amplified by RT-PCR
using primers BTV10_S10_259F and BTV10_S10_611R. Amplified targets were sequenced using BTV10_S10_259F. (C) BTV-10. (D) BTV-1
containing the introduced BTV-10 segment 10. (E) BTV-1.

nome segments with the segments from another serotype mined to be those of BTV-10 by RT-PCR amplification and
would enable the serotype of the virus to be altered. T7 tran- sequencing (data not shown). No progeny (0 out of 19 plaques
scripts derived from segments 2 and 5 of BTV-10 were pre- from three independent experiments) were recovered that con-
pared from pVP2BsmBI and pVP5BsmBI, respectively, and tained only segment 2 or only segment 5 from BTV-10, sug-
mixed with BTV-1 core-derived mRNAs at a 5:1 ratio of each gesting that viruses containing segment 2 from one parent and
T7 transcript to the corresponding core-derived transcript. segment 5 from the other parent are either of reduced viability
Confluent BSR cell monolayers were transfected with the or are generated at a lower frequency than the double reas-
RNA mixture, and dsRNA was prepared from the recovered sortants. This phenomenon was further supported when the
plaques. The origins of segments 2 and 5 were initially assessed introduction of segment 2 or segment 5 from BTV-10 into
by their migration rate on polyacrylamide gels (Fig. 4A). Both BTV-1 was attempted singly, and no reassortant progeny were
segments 2 and 5 from BTV-10 were recovered together at recovered (data not shown).
high frequency (20 to 80%). The change of serotype from The recovery of BTV entirely from T7 transcripts. While the
serotype 1 to serotype 10 was confirmed by a plaque size above method is a viable reverse genetics system that allows the
reduction assay using anti-BTV-10 rabbit serum (data not manipulation of BTV genome segments, the requirement to
shown). Further, the identity of the segments was confirmed by screen for reassortant plaques among wild-type plaques could
RT-PCR followed by restriction digestion (Fig. 4B and C). The hinder the recovery of slow-growing mutants. The ideal reverse
complete sequences of segment 2 and segment 5 were deter- genetics system would permit the assembly of infectious virus
VOL. 82, 2008 BTV FROM SYNTHETIC RNA 8343

FIG. 3. Reassortant progeny genomes containing the plasmid-derived BTV-10 segment 10 with an introduced marker mutation. (A) Genomic
dsRNA from plaques containing BTV-10 segment 10 with an introduced HaeII site and run on a 9% nondenaturing polyacrylamide gel. Lanes 1
to 3, viral dsRNA from three plaque-purified reassortants containing the faster-migrating BTV-10 segment 10. BTV-1 dsRNA and BTV-10 dsRNA
marker lanes are indicated. (B) HaeII digestion of segment 10 RT-PCR products. HaeII-digested RT-PCR products were amplified from genomic
dsRNA using segment 10 primers BTV10_S10_259F and BTV10_S10_611R and separated on 2% agarose gels. U, undigested RT-PCR product;
D, HaeII-digested RT-PCR product. Lanes 1, no template; lanes 2, BTV-10; lanes 3, reassortant with BTV-10 segment 10 introduced; lanes 4,
reassortant with HaeII site-containing BTV-10 segment 10 introduced; lanes 5, BTV-1; lane M, StyI-digested phage ␭ DNA markers, with sizes
indicated in bp. Sizes of RT-PCR product and digest fragments are indicated on the left in bp. (C and D) Sequence electropherograms of segment
10 RT-PCR products. Segment 10 target sequences from total viral dsRNA were amplified by RT-PCR using primers BTV10_S10_238F and
BTV10_S10_654R. Amplified targets were sequenced using BTV10_S10_ 238F. Panel C shows a reassortant with BTV-10 segment 10 introduced.
Panel D shows a reassortant with an HaeII site-containing BTV-10 segment 10 introduced. The arrow indicates the introduced point mutation.

entirely from T7 transcripts. To maximize the probability of hav- BTV-1 had been recovered (Fig. 6B). Titration of BTV-1 derived
ing a viable clone for every genome segment, RT-PCR amplifi- from T7 transcripts exhibited equivalent titers to that of wild-type
cation of each genome segment was performed with dsRNA of virus (1 ⫻ 107 to 3 ⫻ 107 PFU/ml), demonstrating that BTV-1
BTV-1 using the sequence-independent FLAC method devel- derived from the 10 T7 transcripts has no gross replication defects
oped for dsRNA templates (12). Each RT-PCR product was when cultured in BSR cells. To substantiate further that BTV
cloned into pUC19 (38), and the complete sequence of each clone could be derived from T7 transcripts, a mutant of the BTV-1
was compared with the complete sequence of each RT-PCR segment 8 T7 clone was made that contained an introduced silent
product in order to determine whether a representative molecule BglII site, pBTV1S8Bgl. Plaques were recovered from transfec-
had been cloned in each case (data not shown). Alternative clones tions with a complete set of T7 transcripts where the segment 8
were sequenced when coding changes or any differences within BglII marker transcript replaced the wild-type S8 transcript (Fig.
200 nucleotides of the ends of the cloned genome segment were 7A). dsRNA from amplified plaques was found to be indistin-
present. Once a complete set of 10 clones was obtained, each guishable from BTV-1 stock virus on polyacrylamide gels (Fig.
genome segment was PCR amplified using the high-fidelity KOD 7B). Plaques were amplified by infection of BSR cells, and the S8
Hot Start DNA Polymerase (Novagen) to introduce a T7 pro- segment was amplified by RT-PCR using primers NS2_Bam_R
moter directly upstream of the genome segment and a restriction and NS2_Bam_T7_F. Digestion of the RT-PCR product demon-
enzyme site directly downstream (Fig. 2A). These functional cas- strated that a BglII site had been introduced (Fig. 7C). The
settes were also cloned in pUC19. T7 transcripts synthesized using RT-PCR products were sequenced using the BTV1_S8_627R
the restriction-digested plasmid clones were determined to be of primer confirming the introduction of the marker sequence (Fig.
the expected size when resolved on 1% denaturing agarose gels 7D). These data demonstrate that it is possible to recover BTV
(Fig. 5). from a complete genomic set of T7 transcripts and introduce
T7 transcripts made from restriction-digested plasmids were viable mutations using this system.
mixed in equal amounts of 0.3 to 0.4 ␮g of each in a total of 3 to
4 ␮g and used to transfect confluent BSR monolayers. Trans-
DISCUSSION
fected monolayers were overlaid with agarose, and plaques ap-
peared at 3 to 6 days posttransfection (Fig. 6A). dsRNA from The two approaches described represent alternative reverse
amplified plaques was compared with BTV-1 stock virus on poly- genetics systems for BTV using either a mixture of authentic viral
acrylamide gels and found to be indistinguishable, confirming that transcripts and T7 transcripts or a complete genomic set of T7
8344 BOYCE ET AL. J. VIROL.

FIG. 4. Double reassortant progeny genomes containing the plasmid-derived BTV-10 segments 2 and 5. (A) Genomic dsRNA from BTV recovered from
the cotransfection of BSR cells with the BTV-10 segment 5 T7 transcript, the BTV-10 segment 2 T7 transcript, and core-derived BTV-1 transcripts. Genomic
dsRNA from progeny plaques run on a 9% nondenaturing polyacrylamide gel. Lanes 1 to 3, viral dsRNA from three plaque-purified reassortants. Arrows
indicate the slower-migrating BTV-10 segment 2 and segment 5. BTV-1 dsRNA and BTV-10 dsRNA marker lanes are indicated. (B and C) Restriction digest
analysis of segment 2 and segment 5 RT-PCR products. Target regions from segment 2 and segment 5 were RT-PCR amplified from genomic dsRNA, digested
with restriction enzymes specific to the BTV-10 segment, and separated on 1.5% agarose gels. Panel B shows SacI digestion of segment 2 RT-PCR products.
SacI has specificity for segment 2 of serotype 10, with two sites in the target sequence. RT-PCR products were amplified from genomic dsRNA using segment
2 primers BTV10_L2_727F and BTV10_L2_1523R. U, undigested RT-PCR product; D, SacI-digested RT-PCR product. Note that the primer pair does not
amplify BTV-1 segment 2 due to the low homology of this segment among different serotypes. Lanes 1, BTV-1; lanes 2, BTV-10; lanes 3, reassortant with BTV-10
segments 2 and 5 introduced. StyI-digested phage ␭ DNA marker sizes in bp are indicated on left. Sizes of RT-PCR product and digest fragments are indicated
on the right in bp. Panel C shows DraI digestion of segment 5 RT-PCR products. DraI has specificity for segment 5 of serotype 10, with two sites present in the
target sequence. RT-PCR products amplified from genomic dsRNA using segment 5 primers BTV10_M5_724F and BTV10_M5_1590R. U, undigested
RT-PCR product; D, DraI-digested RT-PCR product. Templates in RT-PCRs are as indicated for panel B. Sizes of RT-PCR product and digest fragments are
indicated on right in bp.

transcripts. These systems extend the discovery that BTV tran- The recovery of progeny virus with genome segments orig-
scripts are infectious when used to transfect permissive cells (1) inating from two separate core-derived mRNA preparations
and demonstrate that in vitro synthesized T7 transcripts with a established the principle of introducing exogenous transcripts
cap analogue at the 5⬘ end can functionally substitute for tran- into the genome of BTV by mixing with authentic viral tran-
scripts synthesized by core particles. scripts (Fig. 1B). The observation that mixing the mRNA prep-

FIG. 5. T7 Transcripts of BTV-1 genome segments. Denaturing 1% agarose gel electrophoresis of BTV-1 T7 transcripts generated from restriction
endonuclease-digested clones. M, 1 ␮g of ssRNA markers (Promega), with sizes indicated in nucleotides. (A) Lane 1, segment 1; lane 2, segment 3; lane 3,
segment 5; lane 4, segment 7; lane 5, segment 9. (B) Lane 1, segment 2; lane 2, segment 4; lane 3, segment 6; lane 4, segment 8; lane 5, segment 10.
VOL. 82, 2008 BTV FROM SYNTHETIC RNA 8345

a 5⬘ triphosphate moiety that is known to be a pathogen-


associated molecular pattern recognized by RIG-I that may
lead to the induction of antiviral responses (3, 6, 20, 21). This
model system showed that using an excess of the T7 tran-
script generated reassortant plaques at a frequency that
made the screening of individual plaques practical (15 to
80%). The variation in this efficiency may reflect variation in
the quality or the degree of capping of different T7 tran-
script preparations. The initial screening of plaques by the
rate of migration of the segment 10 dsRNA on polyacryl-
amide gels (Fig. 2) was confirmed by sequencing of the
RT-PCR product (Fig. 2). The high efficiency of reassort-
ment between the T7 transcript and authentic viral tran-
scripts meant that a selectable marker approach was not
required. The introduction of the HaeII site marker muta-
tion into segment 10 of BTV confirmed that reassortants
were derived from the in vitro synthesized segment 10 T7
transcript (Fig. 3). The HaeII-containing segment 10 was
recovered with a similar efficiency to wild-type BTV-10 seg-
ment 10. Neither segment 10 reassortant virus demonstrated
any gross replication deficiencies compared to wild-type
BTV-1 (data not shown). This shows that genome segment
10 from BTV-10 is functionally compatible with a back-
ground of BTV-1 genome segments both at the levels of
RNA packaging and replication and NS3/NS3A protein
function.
The simultaneous reassortment of two T7 transcripts into
the BTV genome to replace the antigenically important outer
capsid proteins of BTV-1 with those from BTV-10 cDNA
clones was shown to be possible using an excess of both T7
transcripts (Fig. 4). Progeny plaques containing the BTV-10
segments 2 and 5 were recovered at a 20 to 80% frequency, but
no reassortants were isolated containing only segment 2 or
FIG. 6. The recovery of infectious BTV by transfection with 10 T7
transcripts. (A) Transfected BSR monolayers overlaid with agarose. segment 5 from BTV-10. This demonstrates that together seg-
Well 1, BSR transfected with 4 ␮g of BTV-1 T7 transcripts; well 2, ments 2 and 5 of BTV-10 can functionally substitute for the
BSR not transfected. Monolayers were fixed and stained with crystal corresponding BTV-1 genome segments and suggests that
violet 5 days after transfection. (B) Genomic dsRNA run on a 9% there is incompatibility between segment 2 and segment 5 from
nondenaturing polyacrylamide gel, extracted from BTV recovered
from the transfection of BSR monolayers as described in panel A. these two serotypes at some level. The encoded proteins, VP2
Lane 1, BTV-1 stock virus; lanes 2 and 3, BTV-1 from separate plaques and VP5, are highly variable due their exposure to immune
derived from transfection with T7 transcripts. selective pressure on the surface of the virus particle. Our
favored explanation is that the VP2 and VP5 proteins have
coevolved and that the three dimensional structure of VP2
arations after transcription was effective in producing reassor- from one serotype is not necessarily compatible with the VP5
tants allowed for the possibility of using plasmid-derived from another serotype. This is consistent with the previously
transcripts in combination with core-derived mRNAs to intro- reported incompatibility of the VP2 and VP5 proteins from
duce targeted mutations into the BTV genome. The introduc- some serotype combinations observed in the generation of
tion of the BTV-10 segment 10 transcript into the genome of BTV virus-like particles (11, 28). Incompatibility of segment 2
BTV-1 was investigated to determine whether the facile intro- and segment 5 in some serotype combinations at an RNA
duction of plasmid-derived transcripts into infectious BTV packaging level is another possibility. The simultaneous intro-
could be achieved. A 5:1 molar ratio of T7 transcript to the duction of both outer capsid proteins from another serotype
corresponding core-derived mRNA was found to give a high allows the possibility of producing vaccine strains to different
frequency of reassortant plaques while maintaining the total serotypes based on a consistent genetic background. The high
recovery of plaques at a practical number. The observation amino acid sequence divergence between the VP2 proteins of
that higher ratios of T7 transcript reduced the total plaque BTV-1 and BTV-10 (40% amino acid identity) suggests that
count may be due to negative effects on virus replication the assembly of varied VP2-VP5 pairs onto the conserved core
caused by overexpression of one gene in comparison to other of the BTV virion will be possible.
genes. Alternatively, the reduced recovery may derive from the The recovery of BTV-1 from a complete set of T7 transcripts
fact that only a portion of T7 transcripts generated in the was investigated to determine whether virus with a fully de-
presence of a cap analogue have the cap analogue incorpo- fined genome could be recovered from cDNA clones. Trans-
rated at the 5⬘ end. Additionally, the uncapped transcripts have fection of BSR monolayers with the 10 T7 transcripts was
8346 BOYCE ET AL. J. VIROL.

A B
1 2 T7-derived BTV-1

1 2 3

1
2
3

4
5
C 6
1 2 3 4 5 6 7
U D U D U D U D U D U D U D
1489
1171 7
8
925 9
680
491
421
10

D
BglII

FIG. 7. The recovery of infectious BTV containing a marker mutation using 10 T7 transcripts. (A) Transfected BSR monolayers overlaid with
agarose. Well 1, BSR transfected with 3 ␮g of BTV-1 T7 transcripts including a segment 8 transcript with an introduced BglII site; well 2, BSR
not transfected. Monolayers were fixed and stained with crystal violet 5 days after transfection. (B) Genomic dsRNA run on a 9% nondenaturing
polyacrylamide gel was extracted from BTV recovered from the transfection of BSR monolayers as described in panel A. Lane 1, BTV-1 stock
virus; lanes 2 and 3, BTV-1 from separate plaques derived from transfection with T7 transcripts. (C) BglII digestion of segment 8 RT-PCR
products. BglII-digested RT-PCR products amplified from genomic dsRNA using segment 8 primers NS2_Bam_T7_F and NS2_Bam_R and
separated on 1% agarose gels. U, undigested RT-PCR product; D, BglII-digested RT-PCR product. Lanes 1, wild-type BTV-1; lanes 2 to 6, five
separate plaques derived from transfection including the segment 8 BglII mutant transcript; lanes 7, no template. StyI-digested phage ␭ DNA
marker sizes (in bp) are indicated on left. Sizes of RT-PCR products and digest fragments are indicated on the right (in bp). (D) Sequence
electropherogram of the segment 8 RT-PCR product from transfection including the segment 8 BglII mutant transcript. Segment 8 target sequence
from total viral dsRNA was amplified by RT-PCR using the primers described in panel A. The amplified target was sequenced using
BTV1_S8_627R. Arrows indicate the introduced point mutations.

found to lead to the production of plaques (Fig. 6). The re- scription in the next round of infection. The recovery of BTV
covery of a BglII marker mutation into the S8 segment con- from T7 transcripts leads to the recovery of ⬃100-fold fewer
firmed that the virus recovered was derived from the T7 tran- plaques than when an equivalent quantity of core-derived viral
scripts used in the transfections (Fig. 7). The recovery of transcripts is used. The lower efficiency may derive from the
infectious BTV from T7 transcripts alone demonstrates that fact that only a portion of T7 transcripts generated in the
T7 transcripts synthesized in the presence of cap analogue are presence of a cap analogue have the cap analogue incorpo-
functionally equivalent to authentic viral transcripts at all rated at the 5⬘ end. In addition to being poorly translated, the
stages of the replication cycle. The T7 transcripts must be uncapped transcripts may be defective during RNA packaging,
translated and selected during genome packaging and must act negative-strand synthesis, or transcription in the next round of
as templates for negative-strand synthesis if virions are to be infection. Additionally the induction of antiviral responses to
generated. Furthermore, after negative-strand synthesis, the the 5⬘ triphosphate via RIG-I may influence the recovery of
resulting dsRNA genome segment must be competent for tran- virus (3, 6, 20, 21). Alternatively, the technical issues associated
VOL. 82, 2008 BTV FROM SYNTHETIC RNA 8347

with generating 10 ssRNA molecules with the conserved ends the functions of which are still being elucidated. (iii) Like
terminal sequences intact may contribute to the lower re- the authentic viral transcripts, the cDNA-derived transcripts
covery observed with T7 transcripts. The presence of tran- are capped, either in vitro with a cap analogue or in vivo
scripts shorter than full-length that derive from incomplete through the cross-capping activity associated with the vaccinia
transcription or the degradation of full-length transcripts is T7 RNA polymerase recombinant (4). To achieve infectious
a minor component in every T7 transcript preparation (Fig. virus recovery, gene expression must be sufficient to allow the
5). These transcripts may be expected to reduce the effi- assembly of progeny core particles, which themselves are tran-
ciency of recovery of infectious virus through their incorpo- scriptionally active and lead to an amplification of gene expres-
ration into assembling virions. sion. A high level of gene expression is needed to assemble
The recovery of BTV entirely from plasmid-derived tran- these incomplete virions, and without the presence of the cap
scripts allows the generation of BTV mutants with a consistent structure at the 5⬘ end of the cDNA-derived transcripts, their
genetic background. This approach will be useful in the recov- stability and level of translation would be greatly reduced (17).
ery mutants, which are expected to have a slow replication Reverse genetics, as with other viruses, can contribute to the
phenotype, as the screening of plaques for the desired mutant understanding of BTV in several research areas. The ability to
among wild-type plaques is not required. In such cases there recover specific mutations into the genome of BTV using ei-
would be no background of faster-replicating virus, which may ther system provides not only a novel tool for the molecular
hamper the recovery of the slower-replicating mutants. This dissection of BTV and related orbiviruses but also the oppor-
approach could also be used to recover primary/low-passage tunity to develop specifically attenuated vaccines to these vi-
isolates of BTV, avoiding gradual alteration of these strains to ruses. The investigation of BTV protein function to date has
cell culture conditions. The recovery of reassortants containing mainly been based on recombinant protein expression. The
one plasmid-derived genome segment requires the construc- ability to introduce specific mutations into the genes of BTV
tion of a single clone or PCR product and is applicable to any will further our understanding of the functions of the viral
genome segment. This single-construct approach can be used proteins in replicating virus and allow the corroboration of
to investigate individual viral genes without the need to con- functions already assigned. The cis-acting RNA sequences that
struct a full set of 10 clones. As Reoviridae members have a control the replication, packaging, and expression of Orbivirus
common replication strategy, both the reassortment and T7- genomes remain unmapped and are poorly understood. Re-
only reverse genetics approaches may be applicable to a wide verse genetics allows mapping of these regulatory sequences
range of viruses which lack a reverse genetics system. The use and can assist in the investigation of how they act. The replace-
of in vitro synthesized T7 transcripts in both approaches obvi- ment of outer capsid proteins can be used to generate vaccine
ates the requirement to supply T7 RNA polymerase by infec- strains to different serotypes based on a common genetic back-
tion with a recombinant poxvirus, which may interfere with the ground. Moreover, it will be possible to identify determinants
replication of the virus being recovered. of pathogenicity of BTV and related orbiviruses and design
Alternative reverse genetics strategies have been used suc- multiply attenuated vaccine strains.
cessfully for other genera in the Reoviridae (9, 10, 26). The first
reverse genetics system was a helper virus system for the mam- ACKNOWLEDGMENTS
malian orthoreoviruses (26). This approach combined reovirus
This work was partly supported by the Biotechnology and Biological
infection of permissive cells and transfection with viral dsRNA, Sciences Research Council, United Kingdom, and partly by the Na-
viral mRNA, a T7 transcript, and in vitro translated viral tional Institute of Allergy and Infectious Diseases, National Institutes
mRNA. Another helper virus approach has allowed the re- of Health, Bethesda, MD.
placement of a rotavirus outer capsid protein with the corre-
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