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Site: Biology 305 Laboratory at http://bio305lab.wikidot.com Source page: Plasmids and vectors at http://bio305lab.wikidot.com/resources:aboutplasmids
M APS
For cloning purposes, we need to know what features a vector has and their relative positions in the vector. We represent this information visually using a plasmid or vector map, which is a cartoon representation, drawn to scale, showing the relative positions of key cloning features. Generally such maps are constructed using the plasmid's DNA sequence. In maps, plasmid bases are numbered sequentially, in a clockwise fashion, starting with base 1 and ending on the base immediately counter-clockwise to base 1. That is, if a plasmid is 3000 base pair (bp) in size it will have bases numbered 1 3000. Map positions of various vector features are indicated relative to their distance from base 1. For example, in the map of pUC18, the cut site for EcoRI is at position 396, and for SapI is at position 690.
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PGEM
-T E ASY
PL ASM ID
I SO L AT ING
Strategy
DNA
Bacteria actually do most of the work in plasmid DNA production. Bacteria are usually grown to stationary phase in liquid media so as to produce the maximum amount of plasmids per ml of culture. As the bacteria grow and divide they also replicate the plasmids that we force them to carry. Plasmids are then isolated from the cultures. There are many protocols for isolating plasmid DNA from bacterial cells but they all contain the same two basic steps: lyse the cells and separate the plasmid DNA from the other cell components. Usually cells are lysed either using heat, or using alkaline conditions. Once the cells are lysed, the plasmid DNA is separated from the rest of the cellular components using a combination of chemical and physical techniques. This sounds a lot more complicated than it is.
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modified replicons that can be maintained at much higher copy numbers. For example, the plasmid pKC7 is a pBR322 derivative that carries the un-altered pMB1 replicon and under normal conditions, is maintained at 15 to 20 copies per cell. On the other hand, pGEM-T , is maintained at 500 to 700 copies per cell.
Citations
1. Sambrook, J. and D. Russell. 2001. Plasmids and their usefulness in molecular cloning. In: Molecular Cloning: A Laboratory Manual, Vol. 1, 3rd ed. CSH Press, Cold Spring Harbor, NY. p. 1.2-1.29 view source print
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