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Pathogen
Characteristics / Virulence
Clinical 1-2 month incubation; majority of infections are probably subclinical polyclonal B cell proliferation & activation (causes CMI T cell response "Downey" cells) mono: 3-5d prodrome; sore throat & palatal enanthem on palate, symmetrical lymphadenopathy, fever, splenomegaly, increased liver enzymes adult: mono-like (heterophile negative) transplacental: major concern when mom has primary infection (often from other child!) transfusion/transplant: reactivation in suppressed host HIV pts: retinitis, GI, CNS, penumonia acute infection of salivary glands, fever, vomiting, h/a, sequelae (orchitis in adults) mild acute hepatitis w/ abrupt onset (symptomatic ~4wks); prodrome followed by jaundice, icterus, dark urine, colorless stool (viral shedding prior to prodrome symptom onset) acute: hepatic inflammation, fever, nausea, RUQ pain, jaundice, dark urine, pale stool (recovery >90%) progressive (<0.5%): rapid liver necrosis chronic (<5%): prolonged, persistent infection -> cirrhosis, carcinoma (vDNA in host genome?) acute: insidious onset (like HAV/HBV) 85% become chronic chronic: similar to HBV (20% cirrhosis, 6% liver failure)
Diagnosis atypical lymphs (Downey cells) heterophile antibodies (+monospot test) serology: IgG antivirus Ab's are permanent (best infants, children) giant cells w/ "owl eye" inclusions TORCH series (newborns) serology & culture febrile child w/ bilateral parotitis
Notes
EBV
gamma-herpesvirus; enveloped; dsDNA; Bcell permanent latency (10 genes still expressed) person-to-person transmission ("kissing disease") - sexual possible
associated w/ Burkitt's lymphoma (c-MYC dysregulation) & other malignancies peak ages: 17-25yo in USA
beta-herpesvirus; replicates in vivo in epithelial cells CMV person-to-person transmission (transplant organs) paramyxovirus, -ssRNA, enveloped, H&N aerosol transmission (highly communicable)
"troll of transplantion"
Mumps
Mumps virus
prevention: MMR IVIG (within 2 wks of exposure) vaccine: children >12m or at risk adults fulminant: liver transplant chronic: many drugs available vaccine & HBIG for prevention parenteral transmission; adults most common; most common cause of need for liver transplant 1a&1b most common in US parenteral transmission; all ages affected (children more mild & chronic)
Hep A (Infectious)
HAV
serology: anti-HAV (initial IgM, then IgG) elevated AST, ALT serology: acute (anti-HBs "window"), chronic (absence of anti-HBs & late anti-HBe) clinical presentation elevated AST, ALT anti-HCV liver function tests can be erratic (often normal)
Hep B (Serum)
HBV
hepadnavirus; psDNA (Dane partical); HBcAg (core), HBsAg (surface), HBeAg (e core-like) angtigens; nuclear transcription w/ cytoplasmic assembly, release via exocytosis including excess HBsAg
HCV
flavivirus; (+)ssRNA; glycoproteins bind CD81 on hepatocytes & other cells; cytoplasmic replication; released via exocytosis
HDV infection increases severity of HBV infections; mimics Hep B presentation Hep D (Delta) HDV circlular (-) ssRNA; enveloped (HBsAg); unusual replication (not tested) coinfection = acute, recovery w/ immunity (90%); superinfection = chronic, risk of fulminant hep & cirrhosis (80%) mimics Hep A presentation
serology same as HBV + HDV antigens & Abs elevated AST, ALT serology: anti-HEV IgM; elevated AST, ALT
Hep E (Enteric)
HEV
fecal-oral
envelope (gp120, gp41), nucleocapsid (enzymes, RNA - genes: gag, pol, env)life cycle: gp120 binds CD4+ lymphs (co-receptor: CXCR4/5) -> fusion -> reverse transcriptase converts RNA to DNA -> integrated into host genome -> translation into 1 polypeptide (cleaved by protease) > budding release
Retroviruses
acute HIV: asymptomatic or flu-like (cytokine release)clinical latency: asymptomatic; replication of HIV, decrease in CD4+ T cellsearly symptomatic HIV: chronic symptoms (fever, night sweats, weight loss, malaise, diarrhea) w/ decreasing T cell countAIDS (HIV+ & 1+ opportunistic infections OR CD4 <200 OR CD4<14%): immunodepression w/ infections & dementia
pt hx & clinical presentationPCR & ELISA for HIV Ab's & viral load
HAART
HIV-1: more serious, worldwideHIV-2: more mild, West Africatransmission: sexual, parenterally, perinatally
usually asymptomatic non-cytolytic Oncoviruses: HTLV infects CD4+ cells, tax gene transactivates genes for IL2 & IL2R -> T cell clonal proliferation can lead to acute T cell leukemias (ATLL) even after long latency: CD4+ malignant hyperproliferation complications: tropical spastic paraparesis, opportunistic infections ELISA: HTLVspecific Ab or antigens elevated WBC, atypical lymphs combo IFNalpha & AZT (ATLL usually fatal) most common US transmission: IVDU & blood transfusions
Dengue Fever
small (+) enveloped RNA; internalized via endocytosis; replication in cytoplasm of phagocytic cells Ab's enhance viral infectivity
dengue fever (DF): acute infection w/ rash followed by secondary maculopapular rash w/ desquamation; resolves in 2wks dengue hemorragic fever (DHF): upon secondary infection of different strain -> hypersensitivity reaction; thrombocytopenia, petechiae, purpura, increased Hct due to plasma loss, shock
supportive care ribavirin epidemiology & geographic distribution serology & labs control of vector population, patient isolation, vaccination (yellow fever)
worldwide no cross immunity of strains; children affected most frequently primary vector: mosquito natural reservoir: monkey
Africa, Central America, South America Yellow fever virus Dakar & 17D (Flavivirus) yellow fever: acute phase: non-specific S/S for 3-4d toxic phase (15%): jaundic, GI hemorrhage (black vomit), & widespread damage primary vector: mosquito natural host: monkey children have more mild infection Eastern & Southern Africa host: livestock vector: mosquito Asia & Europe reservoir: striped field mouse SE Europe, Asia, Africa vector & reservoir (transovarial transmission): tick Nigeria, W Africa natural host: multimammate rat transmission to humans via contaminated water or direct contact endemic to Africa natural host: fruit bats (not confirmed transmission unknown
Yellow Fever
phlebovirus (bunyaviridae) hantaan virus (hantavirus, bunyaviridae) nairovirus (bunyaviridae) larger (-) RNA, enveloped, segmented genome; replication in cytoplasm; released via exocytosis or lysis
asymptomatic/mild; can progress to hemorrhage & shock, encephalitis, blindness non-specific S/S; inflammation of retina/blindness (<10%) abrupt onset non-specific S/S followed by bleeding from mucous membranes & skin, pulmonary edema & shock
Lassa Fever
large circular enveloped ssRNA (L&S); ribosomes in envelope; replication in cytoplasm; release via budding
long incubation, slow onset non-specific S/S w/ rash; progression to necrosis of multiple organs; deafness common in survivors non-specific S/S followed by rash, then severe to fatal hemorrhagic fever, DIC, edema, shock virus replicates rapidly, causing extensive tissue necrosis; viremia persists throught acute infection benign tertian malaria: 9-15d incubation fever paroxysms every 48hrs (2-6hrs), shaking chills 10-15min, sweating, anemia, h/a, myalgia, n/v, diarrhea, cough relapsing (up to 5yrs) is linked to hypnozoite in liver
filamentous pleomorphic (-) enveloped ssRNA; replication in cytoplasm; released via budding
Malaria
Plasmodium vivax
1) sporozoite: infective stage, migrates to liver, 2) merozoites erupt from hepatoctyes & infect RBCs ("ring stage"), 3) trophozoite develops, lyses RBC upon exit vector: anopheline mosquito (night feeder) host resistance: sickle cell anemia
malignant tertian malaria: fever paroxysms (longer febrile period, shorter intervals), chills, anemia blackwater fever (free Hgb in urine), capillary obstruction (cerebral malaria), algid malaria (cold skin c high visceral temp) quartan malaira: fever paroxysms (every 72hr, last 6hrs) fever paroxysms (every 48hrs) fever paroxysms (every 24hrs) intraerythrocytic, malaria-like parasite: fever, chills, h/a, myalgia asymptomatic or flu-like in immunocompetent hosts congenital infections: worst in 1st trimester, chorioretinitis, hydrocephaly, microcephaly, spontaneous abortion chronic ASS: trypanosomal chancre/sore, parasitemia, lymphadenitis, fever, somnolence, CNS invasion = death acute ASS: trypanosomal sore, parasitemia, lymphadenitis, encephalomyelitis, no somnolence (death before CNS invasion) acute: children <5yo, mild S/S w/ Romana's sign (swelling of eyelid) chronic: adults (silent for decades), cardiac (cardiomyopathy) & GI (megacolon) complications, nerve cell necrosis
Plasmodium malariae Plasmodium ovale Plasmodium knowlesi Nantucket Island Fever (Babesiosis) Babesia microti vector: deer tick
basket & band form trophozoitse "maltese cross" is diagnositic (but not always seen) clindamycin + quinine only tx symptomatic pts pyrimethamine + sulfadiazine New England region
Toxoplasmosis
Toxoplasma gondii
infective stage: eat zoitocyst (bradyzoite) in meat, or oocyst (cat feces) tachyzoites target parenchymal cells & RES system
amastigote (no flagella), promastigote & trypomastigote (flagella)glycoprotein switching allows for evasionvector: tsetse files (day feeder)
West & Central Africa trypomastigote in blood East & Central Africa
Chagas Disease
Trypanosoma cruzi
infective stage: metacyclic trypomastigote vector: reduviid (triatmoid, kissing) bug droppings (not bite)
Leishmaniasis
dermotropic form: cutaneous ulcer at bite site (secondary infections common), spontaneously heals (2m-1yr) w/ scar viscerotropic form: high fever (RES involvement), hepatosplenomegaly
clinical presentation
stibogluconate sodium
trematodes (blood flukes) Schistosoma japonicum Schistosomiase s Schistosoma haematobium Schistosoma mekongi Schistosoma intercalatum Cercarial Dermatitis ("Swimmer's Itch") definitive host: waterfowl Schistosoma spp. cercariae seldom go futher than the epidermis intermediate host: snail cercariae penetrate skin -> liver -> mesenteric vv. & bladder vv. -> eggs pass -> larvae penetrate snail -> cercariae release from snail
migratory phase: parasite entry & development/migration; allergic rxn at skin entry site; can develop Katayama syndrome acute phase: worm migration & egg release chronic phase: host response to eggs in tissues (fibrosis of liver, intestine, bladder), granuloma formation
Africa, Middle East, tropical America; mesenteric venules; humans are only reservoir eggs in stool (mansoni & japonicum) eggs in urine (haematobium) Far East; mesenteric venules praziquantel Middle East, Africa; bladder venules; humans are only reservoir Thailand, Laos, Cambodia Central Africa antihistamines for pruritis steroid creams to reduce swelling remove worm a little bit at a time around stick
itching, erythema & maculopapular eruptions at cercariae entry sites; most common on LE
Dracunculiasis
Dracunculus medinensis
ingest copepods, larvae emerge in stomach & penetrate GI wall, migrate to skin & exit causing blisters & ulcers filarial fever -> lymphangitis -> lymph stagnation -> elephantiasis lymphedema occurs when lymphatic channels are occluded gross elephantoid tissue is not reversible similar to wuchereriasis
infective stage: filariform larvae Wuchereriasis (Elephantitis) Wuchereria bancrofti vector: night feeding mosquito enters via bite & migrates to peripheral lymphatics Malayan Filariasis Brugia malayi vector: mosquito
infective stage: filariform larvae Onchocerca volvulus intermediate host: black fly Breed in river/streams infective stage: filariform larve
subcutaneous nodules & elephantoid symptoms; invasion of optic n. & retina causes visual impairment & sclerosing keratitis local adult worm migrates through subcutaneous tissues (eye)
Loa loa intermediate host: deer fly Dirofilaria immitis (dog heartworm) infective stage: filariform larvae vector: mosquito in dogs- R/pulmonary a.
Africa
Dirofilariasis
in humans the adult worms cause coin lesions (lungs) & nodules in subcutaneous tissue
surgery
Southeast US
SIRS (Systemic Inflammatory Response Syndrome) Sepsis MODS (Multiple Organ Dysfunction Syndrome)
dysregulated host inflammatory responsefever > 100.5F, HR >90, RR >20, high or low WBCs or bands Sepsis: SIRS due to culture-proven or visually identified infection Severe Sepsis: sepsis + hypoperfusion/dysfunction S/S Septic Shock: severe sepsis + systemic BP<60 or maintaining BP requiring drugs altered organ function & homeostasis can't be maintained w/o intervention primary vs. secondary S. aureus Step mutans Group D Strep Group B Strep most common cause subacute disease; common mostly subacute acute in pregnant pts & older pts w/ underlying disease subacute disease most common gram neg isolates from subacute acute; homeless males IVDA subacute 1) Identify agent 2) IV antibiotics (high serum conc.) Duke Criteria 3) Surgical removal of vegetation 4) prophylactic antibiotics
Acute: invasive bacterial infection; febrile, toxic, days-weeks, normal valves Subacute: less virulent pathogen, only abnormal valves Pathogenesis: 1) nonbacterial thrombotic vegetation, platelet & fibfrin aggregation 2) bacteremia: organism can adhere to damaged area, vegetation breaks off causing emboli & microemboli Clinical: janeway lesions (flat, painless macules), splinter petechiae, glomerulonephritis, Osler's nodes (small red painful nodules), Roth's spots (retina)
Infective Endocarditis
small gram neg coccobacillus; intracellular (macrophages) aerobe transmission: 1) tick or deer fly bite, 2) direct contact (rabbit), 3) aerosols, 4) ingestion, 5) animal bite (cat), 6) lab exposure
1) ulceroglandular: via bite; painful papule at entry site, ulcerates after 96hrs, lymphadenopathy 2) pneumonic: via inhalation; necrotizing granulomas, patchy infiltrates on CXR 3) oropharyngeal: via ingestion; GI S/S 4) oculoglandular: autoinoculation of eye 5) typhoidal: systemic illness w/ no anatomic location mild, few complications
Brucella abortus Brucella meitensis Brucella suis Brucella canis Bartonella bacilliformis small gram neg coccobacillus, intracellular aerobe transmission: zoonotic (no vector) - ingestion (milk products), direct contact, or inhalation
reportable disease cultures anemia, thromobocytopenia, low to normal WBC antibiotic combos
cattle sheep, goats most common in US swine & rodents dogs, foxes, coyotes host: various animals vector: sandfly host: humans only vector: human body louse
Brucellosis
acute: fever & non-specific S/S chronic: abscesses & granulomas -> GI, arthritis, respiratory chronic, destructive lesions mild, few complications acute: Oroya fever - anemia, nonspecific S/S chronic: Verruga - cutaneous nodules Trench Fever: 5-7d fever, recurs every 4-5d; + non-specific S/S Bacilliary Angiomatosis (also caused by B. henselae) Cat Scratch Disease: via cat bite (or cat flea bite) papule/pustule -> chronic regional lymphadenopathy
Bartonellosis
Bartonella quintana
antibiotic combos
Bartonella henselae
host: cats vector: cat flea children 59yo;reservoir/vector: dog tick (SE & West), wood tick (Rocky Mtns & SW Canada) reservoir: house mouse; vector: mouse mite
Rickettsia rickettsii
Rickettsiaceae: gram neg, aerobic bacilli, glycocalyx, weak lipid A, phospholipase A, obligate intracellularinfect vascular endothelium
persistent fever >102, intractable frontal H/A, rash begins on wrist/ankles spreading centripetally red papular rash at bite site -> eschar formation -> fever, H/A -> generalized rash (pox-like)
Ricketsial Pox
Rickettsia akari
doxycycline
Epidemic Typhus
Rickettsia prowazekii
Rickettsiaceae: gram neg, aerobic bacilli, glycocalyx, weak lipid A, phospholipase A, obligate intracellularinfect vascular endothelium
fever, intractable H/A, followed by rash beginning on trunk spreading centrifugal (sparing face, palms/soles) Brill-Zinsser disease: recrudescent epidemic typhus
formalininactivate vaccine
crowding / poor sanitation; reservoir: humans; vector: human body louse (feces in bite wound - lack transovarial transmission) warm & humid areas (urban); reservoir: rat; vector: rat flea (via bite or feces) majority in Asia; reservoir: rodents & mites; vector: chigger mites (via bite) SE & Midwest reservoir: deer, dogs, foxes, coyotes, wolves; vector: Lone Star tick
Rickettsia typhi
doxycycline
Scrub Typhus
Orientia tsutsugamushi
papular rash that ulcerates at bite site > fever>104F -> severe H/A -> rash on trunk spreading centrifugally
doxycycline
Ehrlichia chaffeensis Anaplasmataceae: gram neg, aerobic coccobicilli, slime layer, lack endotoxin & peptidoglycan, obligate intracellular (in vesicles = morulae) infect WBCs
Ehrlichia ewingii
doxycycline
Anaplasmosis
Anaplasma phagocytophilum
infects neutrophils; rash after prodrome (10%) CXR serology: IgM to phase I&II, IgG to phase II (acute) liver granulomas
mostly in dogs; serology crossreactivity w/ E.chaffeensis NE & Midwest reservoir: various small mammals; vector: black-legged tick Worldwide reservoir: animals, ticks, birds transmission: inhalation (most common), ingestion (milk), tick bite (rare)
Q Fever
Coxiella burnetii
Coxiellaceae: pleomorphic gram neg bacillus, weak lipid A, aerobic; SCV vs. LCV; phase variation
doxycycline + antibiotics
week 1: stepwise fever, h/a, rose spots week2: progression; abdominal distension; hepatosplenomegaly; bradycardia & dicrotic pulse week 3: more toxic; typhoid stage (apathy & confusion); risk of intestinal hemorrhage or perforation, toxemia, & myocarditis week 4: slow improvement w/ neuro complications 1) Bubonic Plague: flea bite; sudden onset non-specific S/S -> buboe formation (unilateral) -> if untreated can lead to pneumonia, meningitis, bacteremia 2) Pneumonic Plague: often secondary to bubonic / bacteremia (primary = aerosol droplets); sudden onset dyspnea, cough, sputum; rapidly fatal if untreated 3)Septicemic Plague: NO buboes; febrile & extremely ill -> hypotension, DIC, multiorgan failure Stage 1: Early Infection:erythema migrans rash (bull's eye)Stage 2: Disseminated:lymphohematogenous spread (spirochetemia) -> non-specific S/S w/ secondary erythema migransStage 3: Late Infection:CNS (meningitis, bell's palsy), cardiac (irregular heart beats), & musculoskeletal involvement (arthritis) notify WHO wayson stain bipolar, safety pin antibody titer or immunofluorescence stain to F1 antigen CXR DOC: tetracyclines & sulfonamides respiratory isolation (4872hr) no commercial vax vector: flea; host: rodents infectious dose: 1 native americans at 10x risk cats- aresol!! culture (black on HE agar) most snesitive from bone marrow aspirate serology: typhidot histologic sections begin empirical antibiotic tx followed by susceptibility tests vaccine prior to travel oral-
Typhoid Fever
Salmonella typhii
motile, facultative intracellular anaerobic, gram neg bacilli; nonlactose fermenter; produce H2S; O, Vi, & H antigen; tropism for M cells of terminal ileum
fecal-oral transmission (poor sanitation); large inoculum required (overcome gastric acid)
Plague
Yersinia pestis
non-spore-forming, non-motile, gram neg coccobicillus, intracellular (monocytes); wide temp tolerance; Ca & temp regulated virulence (Yops, V&W antigens, F1 envelope antigen, coagulase), LPS endotoxin
oral doxycycline serology: initial ELISA for antiBorrelia Ab's; then western blot for B.burgdorferi JarischHerxheimer possible vax taken off market
Lyme Disease
Borrelia burgdorferi
motile gram neg spirochete; no LPS; microaerophile; linear chromosome; virulence: OSP, no toxins, peptidoglycan, not cleared readily
New England & Minn/Wisc regionsvector: Ixodes scapularis & pacificus (hard body tick) -bite only once, 48hr feedingreservoir: mouse, chipmunks
SE & S Central US Southern TickAssociated Rash Illness (STARI) Borrelia lonestari similar to Lyme disease vector: Amblyomma americanum (Lone Star tick) - aggressively bite!
much larger (microscopy ID is much easier); cold seasons (crowding) Epidemic Relapsing Fever (LBRF) Borrelia recurrentis 1) Incubation: 6-7d 2) Primary Spirochetemia: acute onset high fever, chills, h/a, arthralgia, hepatosplenomegaly (3-6d) 3) Latent Phase: afebrile, bacteria enter organs (not in blood) to replicate (710d) 4) Secondary Spirochetemia: antigenic shift variation, decrease in duration & severity with each relapse hx, blood ID (not latent phase), culture (BSK) vector: Pediculus humanus (body louse) infection occurs when bite is felt & bug is smashed reservoir: humans vector (&reservoir): Ornithodoros hermsii (soft-bodied tick) reservoir host: rodents (blood & tissues are infectious) west of Miss Riv, MaySept, feed fast & at night 1) Septicemic Stage: 4-7d flu-like, then 1-3d afebrile asymptomatic, then fever recurs 2) Immune Stage: aspetic meningitis, subconjuntival hemorrhage, renal S/S 3) Icteric Stage (Weil Syndrome): jaundic, MODS hx culture (definitive) serology: MAT, IgM ELISA supportive, antibiotics JarischHerxheimer response possible host: renal tubes of mammals (rodents) transmission: contaminated water & vertical tropics, temperate regions (warm & wet)
Leptospirosis
Leptospira interrogans
long & thin, 18+ coils, intracellular, no virulence, hardy/persists outside of host