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SCREENING, OPTIMIZATION OF PRODUCTION AND PARTIAL CHARACTERIZATION OF ALKALINE PROTEASE FROM HALOALKALIPHILIC BACILLUS SP
B.K.M.Lakshmi1, P.V. Ratna sri2, K. Ambika Devi3, KP.J.Hemalatha4
1, 2, 3
Research scholar, 4Professor, Department of Microbiology, Andhra University, Visakhapatnam, Andhra Pradesh, India
Abstract
Bacillus strains isolated from the salteren pond (Kakinada) were screened and identified for high alkaline protease activity. The isolates which were positive on skim milk agar (1%) were selected as protease producing strains. Of the ten bacterial isolates screened, isolate S-8 was observed as a potential haloalkaline protease producer and it was identified as Bacillus cereus strain S8 (MTCC NO: 11901) by 16S rRNA gene sequencing, phylogenetic tree analysis and by different biochemical tests. Protease production was enhanced by optimizing the culture conditions. The nutritional factors such as carbon and nitrogen sources, NaCl and also physical parameters like temperature, incubation time, pH, inoculum size were optimized for the maximum yield of protease. Studies on the effect of different carbon and nitrogen sources revealed that maximum protease production was obtained in the medium supplemented with Molasses,1%(w/v); Potassium nitrate, 0.75%(w/v); salt solution- 5%(v/v) {MgSo4.7H2O, 0.5%(w/v); KH2PO4, 0.5%(w/v)}; FeSO4.7H2O, 0.01%(w/v) and CaCO3, 0.5% respectively. Thus, with selected carbon and nitrogen sources along with 1 % NaCl and 2% inoculum the maximum protease production (205.0 U/ml) was obtained in the period of 72 h incubation at pH-12.0 under 160 rpm when compared to the initial enzyme production (165.0 U/ml). The crude enzyme extract of this strain was also characterized with respect to temperature, pH, incubation period and different concentrations of casein which was used as enzyme substrate. This study shows that the enzyme has wide range of pH stability from 8 to 11 with optimum activity at pH-10.0. It is thermostable with optimum activity at 70C (392U/ml) with 1h incubation of enzyme with 1% casein as its substrate. From the above investigations it was concluded that the protease production by these microorganisms at wide temperatures and pH ranges could be explored for varied industrial applications.
Keywords: Bacillus cereus strain S8, Alkaline protease, Optimization, Protease production, 16S rRNA gene sequencing, phylogenetic tree analysis, Enzyme characterization. ----------------------------------------------------------------------***----------------------------------------------------------------------1. INTRODUCTION
Proteases are one of the most important classes of enzymes, occupying a major share of 60% of total enzyme market [1]. Proteolytic enzymes are ubiquitous in occurrence, being found in all living organisms, are essential for cell growth and differentiation. Proteases represent one of the three largest groups of industrially important enzymes [2]. Alkaline proteases are of great interest because of their high proteolytic activity and stability under alkaline conditions [3, 4]. These enzymes find applications in detergents, feather processing, food processing, silk gumming, pharmaceuticals, bioremediation, biosynthesis, biotransformation, silver recovery from photographic film, production of digestive and certain medical treatments of inflammation and virulent wounds [5, 6, 7, 8, 9].The majority of commercial alkaline proteases are produced by bacteria, especially Bacillus sps. [9]. Since the first alkaline protease Carlsberg from Bacillus licheniformis was commercialized as an additive in detergents in 1960s [4], a number of Bacillus derived alkaline proteases have been purified and characterized because of their significant proteolytic activity, stability, broad substrate specificity, short period of fermentation, simple downstream purification and low cost [3, 10]. Multiple applications of these enzymes stimulated interest to discover them with novel properties and considerable advancement of basic research into these enzymes. Microbial proteases also play a crucial role in numerous pathogenic processes mainly responsible for degradation of elastin, collagen, proteoglycans and also proteins that function in vivo host defence. Identification and characterization of microbial protease are prerequisite for understanding their role in pathogenesis [11]. Furthermore studies have shown that nutritional factors including sources of carbon and nitrogen can influence protease enzyme production [12]. Besides these nutritional factors, physical factors such as inoculum concentration [13], temperature, pH [14] and incubation time [15] can also significantly affect protease production and its
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purified PCR product was sequenced with four forward and three reverse primers, namely 8-27f, 357f (5'704f (5'CTCCTACGGGAGGCAGCAG-3'), TAGCGGTGAAATGCGTAGA-3'), 1114f (5'685r (5'GCAACGAGCGCAACC-3'), TCTACGCATTTCACCGCTAC-3'), 1110r (5'GGGTTGCGCTCGTTG-3') and 1500r (Escherichia coli numbering system). Sequencing of the amplified product was done by dideoxy chain terminator method using the Big Dye terminator kit followed by capillary electrophoresis on an ABI 310 genetic analyzer (Applied Biosystems, USA). The identification of phylogenetic neighbours and the calculation of pairwise 16S rRNA gene sequence similarities were achieved using the EzTaxon server [18]. The 16S rRNA gene sequence of S-8 and the members of the closely related genera were retrieved from EzTaxon server and aligned using the MEGA software version 5.0 [19].Phylogenetic trees were constructed using the neighbour-joining as well as maximum parsimony algorithms. Bootstrap analysis was performed to assess the confidence limits of the branching [20].
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The effect of pH on the proteolytic activity of crude alkaline protease from strain S8 was determined by assaying the enzyme activity at different pH values ranging from 2.0 to 12.0 using the following buffer systems: KCl-HCl (pH 2.0), Citrate (pH 3.0 to 6.0), phosphate (pH 7.0), TrisHCl (pH 8.0 to 9.0), GlycineNaOH (pH 10 to12).
2.8. Optimization of pH, Inoculum Size, Incubation Period and Temperature for Protease Production
The effect of various physical parameters on protease production was assessed by growing bacterial culture in the standard growth media. For optimizing pH, the medium was prepared by varying the pH from 2.0 to 12.0. Effect of varying inoculum percentage from 0.5% to 5% with 0.5% variation on protease production was determined. Similarly, for the investigation of optimal incubation time for protease production, the bacterial culture was inoculated in the growth media and optimized for different incubation periods up to 120h at 160rpm. Samples were withdrawn aseptically for every 6 h intervals and protease activity was determined. Different temperatures (200C to 700C) were also tested for optimizing the temperature.
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4.2.
Morphological
Characterization
and
Fig.2: 16S rRNA sequence of isolated strain S8 done by dideoxy chain terminator method.
Fig 3: Phylogenetic relationship of strain S8 (Underlined) isolated from saltern sediments. The tree is constructed using 16S rRNA by neighbour joining and parsimony method.
4.3. Optimization of Culture Conditions for Protease Production 4.3.1. Effect of pH, Inoculum Size and Incubation Period and Temperature on Protease Production
B. cereus strain S8 could grow and produce protease over a wide range of pH (2.012.0). Maximum protease production was observed at pH 12 (160.50 U/ml) (Fig 4). The production at pH 10 and 11 was relatively comparable. In the present study, maximum protease production was observed at 2%
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Fig 7 Effect of different temperatures on protease production in Bacillus cereus strain S8 isolated from saltern sediments. The bars indicate the standard deviation of three replicates analyzed.
Fig 4: Effect of pH on protease production in Bacillus cereus strain S8 isolated from saltern sediments. The bars indicate the standard deviation of three replicates analyzed.
Protease Activity( U/ml)
Fig 5 Effect of different inoculum concentrations on protease production in Bacillus cereus strain S8 isolated from saltern sediments. The bars indicate the standard deviation of three replicates analyzed.
Protease Activity ( U/ml)
Fig 6: Effect of different incubation periods on protease production in Bacillus cereus strain S8 isolated from saltern sediments. The bars indicate the standard deviation of three replicates analyzed.
NaCl concentration
Fig 8. Effect of different NaCl concentrations on protease production in Bacillus cereus strain S8 isolated from saltern sediments. The bars indicate the standard deviation of three replicates analyzed.
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250
Protease Activity ( U/ml)
among different concentrations of casein used, 1% casein (Fig 14) showed optimal enzyme activity. 500 400 300 200 100 0 30 35 40 45 50 55 60 65 70 75 80 Temperature(0C) .
Carbon Source
Glu: Glucose, Mal: Maltose, Man: Mannose, S.B: Sugarcane Bagasse, R.B: Rice bran, R.H: Rice husk, Mol: Molasses Fig 9 Effect of different Carbon sources on protease production in Bacillus cereus strain S8 isolated from saltern sediments. The bars indicate the standard deviation of three replicates analyzed.
Fig 11: Activity of protease from Bacillus cereus strain S8 at different temperatures.
70 60 50 40 30 20 10 0 2 3 4 5 6 7 8 9 10 11 12 pH .
Fig 10 Effect of different Organic and Inorganic nitrogen sources on protease production in Bacillus cereus strain S8 isolated from saltern sediments. The bars indicate the standard deviation of three replicates analyzed.
Pep: Peptone, Cas: Casein, SKM: Skim milk powder, BE: Beef extract, YE: Yeast extract, A.C: Ammonium chloride, A.N: Ammonium nitrate, A.S: Ammonium sulphate, P.N: Potassium nitrate.
Fig 12: Activity of protease from Bacillus cereus strain S8 different pH. 140 120 100 80 60 40 20 0 5 10 15 20 25 30 35 40 45 50 55 60 65 Incubation Period(minutes) .
Fig 13: Activity of protease from Bacillus cereus strain S8 at different Incubation Periods of Enzyme mixture.
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Protease Activity(U/ml)
significant role in enhancing the production of alkaline protease and growth of the B.cereus isolate S8. Repressed growth and enzyme production at higher concentration of the substrates might be due the catabolic repression, or substrate inhibition, a traditional property of batch fermentation processes. Presence of phosphate ions in the medium increases enzyme production. These results were supported by Calik [31] who found 1.55 fold higher enzyme activities in the presence of phosphate ions by Bacillus subtilis. While, Rahman [32] observed 39 % increase in enzyme production in the presence of 2mM phosphate ions in the growth medium by Pseudomonas aeruginosa. Presence of calcium carbonate in the medium increased the production of protease.% These results were in agreement with the earlier findings which showed enhancement of protease activity in the presence of metal ions and it was suggested that these metal ions increased stability of proteases [33]. The enhancing effect of sodium on bacterial alkaline protease has been reported rarely. Chandrasekaran and Dhar [34] observed the beneficial effect of sodium chloride on alkaline protease production by Streptomyces moderatus NRRL 3150. An increased salt concentration creates change in the lipid composition of cell membrane. Hence, the growth rate decreases causing reduced enzyme production. Prolonged incubation period has been documented to lead auto digestion of the proteases and proteolytic attack by other proteases resulting in decrease in enzyme activity [35, 36]. It has been noted that microorganisms are dependent on the extra cellular pH for their cell growth and enzyme production [26]. Regarding the effect of inoculum size, maximum enzyme production (170.00 U/ml) was observed with 2.0 % (v/v) inoculum size and thereafter, increase of inoculum size decreased alkaline protease production. Increased protease production with small inoculum size has been suggested to be due to the higher surface area to volume ratio [32]. At higher concentration of inoculum, the nutrient might be consumed rapidly and resulted into a lesser growth as well as lesser alkaline protease production. These findings are in good agreement with the study of Kanekar [37] who have reported maximum enzyme activity (167.28 U/ml) of Bacillus alcalophilus with 2.0 % inoculum of 24 h old. Partial characterisation studies of the crude enzyme showed that, this enzyme was thermostable with an optimum temperature of 700C at a pH 10.0 with 1h incubation of enzyme reaction mixture. Similar result was reported by Sandhya and Tambekar [28] in Bacillus pseudofirmus and Bacillus odyssey. There is a large demand of proteases, which can withstand at high temperature as well as at high pH. The isolation and production of protease enzyme with these characteristics is most important to fulfill the industrial demand [38]. These novel properties exhibited by the protease of B.cereus strain S8 to meet the present industrial demand.
Substrate (casein) concentration . Fig 14: Activity of protease from Bacillus cereus strain S8 at different concentrations of substrate (casein)
5. DISCUSSION
One of the main concerns of this study was to isolate and identify alkalophilic Bacillus sp. having a vital tendency to secrete extra-cellular proteolytic enzyme. Accordingly, 17 bacterial strains were isolated from saltern pond soil sample suspension processed on nutrient agar medium. Out of these isolates, isolate S8 represents genus Bacillus and exhibited vivid zone of clearance (4.6 cm) on skim milk agar medium at pH 10. The use of alkaline skim milk agar for the isolation of alkaline protease producing bacteria has earlier been reported by some workers [23, 24, 25]. In fact these bacteria are known for their abilities to secrete large amounts of alkaline proteases having significant proteolytic activity and stability at considerably high pH and temperatures [26, 27]. In the present study, the proteolytic activities of the isolate S8 were tested under extreme alkaline conditions and it was confirmed as Bacillus cereus isolate S8 by 16S r RNA gene sequencing. In the present work, the self constructed medium of pH-12.0 supported maximum enzyme production (205.00 U/ml) after 72h of incubation. Similar results were also reported in Bacillus odyssey with 72 h incubation period [28]. The medium provided primarily adequate amount of nutrients required for the production of alkaline protease. Carbon and nitrogen sources, inorganic salts and other growth factors are important variables that affect the growth and products of microbes [29, 30]. Requirement for specific carbon and nitrogen source differs from organism to organism, or even among the same species isolated from different sources [26]. Among various carbon and nitrogen sources used molasses (1%) and potassium nitrate (0.75%) supported maximum enzyme production. Both organic and inorganic nitrogen compounds were utilized by this strain. A decrease in enzyme production was observed at lower and higher concentrations. The results indicated that proper concentration level of molasses and potassium nitrate played a
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6. CONCLUSIONS
Alkaline protease producing strain Isolate S8 from the soil of saltern pond was isolated and identified as Bacillus cereus strain S8 by 16s rRNA gene sequencing and phylogenetic tree analysis. Optimization of the fermentation conditions (temperature, inoculum concentration, carbon and nitrogen sources, incubation time and initial media pH) were optimized. Based on the results, maximum protease production was obtained in the medium supplemented with Molasses,1%(w/v); Potassium nitrate, 0.75%(w/v); salt solution- 5%(v/v) {MgSo4.7H2O, 0.5%(w/v); KH2PO4, 0.5%(w/v)}; FeSO4.7H2O, 0.01%(w/v) and CaCO3, 0.5% at 370C after 72h incubation. Production of protease was achieved with cheap carbon sources like molasses in a cost effective manner and showed halo tolerance. Characterization studies of the crude enzyme showed that the enzyme was thermostable, showing activity at wide pH ranges. These promising features of the isolated Bacillus cereus strain S8 might increase the scope of the strain to meet industrial demands of various sectors.
ACKNOWLEDGEMENTS
The authors would like to acknowledge UGC-MRP, New Delhi, India, for providing financial support to carry out this work.
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protease producing bacteria from tannery industry effluent, Recent research in science and technology, 2009, 1(2): 063-066
BIOGRAPHIES
B.K.M.Lakshmi, Research scholar Department of Microbiology College of science and technology Andhra University Visakhapatnam- 530 003 Andhra Pradesh, India, Kamalab42@gmail.com P.V. Ratna sri, Research scholar Department of Microbiology College of science and technology Andhra University Visakhapatnam,-530 003 Andhra Pradesh, India, ratnasrii@gmail.com K. Ambika Devi, Research scholar Department of Microbiology College of science and technology Andhra University Visakhapatnam,-530 003 Andhra Pradesh, India, Ambicadevi24@gmail.com Prof.K.P.J.Hemalatha, Head of the Department of Microbiology College of science and technology Andhra University Visakhapatnam,-530 003 Andhra Pradesh, India, hemalathakpj@gmail.com
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