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CDNA of an IL-8 was cloned from Japanese sea perch. MRNA transcript of LjIL-8 was detectable in all the examined tissues. The temporal expression of mRNA in the spleen was up-regulated by lipopolyssacharide (LPS) stimulation and reached the maximum level at 6 h post-stimulation.
CDNA of an IL-8 was cloned from Japanese sea perch. MRNA transcript of LjIL-8 was detectable in all the examined tissues. The temporal expression of mRNA in the spleen was up-regulated by lipopolyssacharide (LPS) stimulation and reached the maximum level at 6 h post-stimulation.
CDNA of an IL-8 was cloned from Japanese sea perch. MRNA transcript of LjIL-8 was detectable in all the examined tissues. The temporal expression of mRNA in the spleen was up-regulated by lipopolyssacharide (LPS) stimulation and reached the maximum level at 6 h post-stimulation.
Molecular cloning and mRNA expression analysis of interleukin-8
gene in Japanese sea perch (Lateolabrax japonicus)
Lihua Qiu Hanhua Zhang Keng Yang Shigui Jiang Received: 16 April 2008 / Accepted: 2 June 2008 / Published online: 19 June 2008 Springer Science+Business Media B.V. 2008 Abstract Interleukin-8 (IL-8), the rst known chemo- kine, is a CXC chemokine, which is cable of attracting neutrophils and inducing them to release lysozomal enzymes, triggering the respiratory burst. In the present study, the cDNA of an IL-8 was cloned from Japanese sea perch Lateolabrax japonicus (designated LjIL-8) by homology cloning and rapid amplication of cDNA ends (RACE) approaches. The full-length cDNA of LjIL-8 consisted of 803 nucleotides with a canonical polyadenyl- ation signal sequence AATAAA and a poly(A) tail, and an open reading frame (ORF) of 300 bp encoding a poly- peptide of 99 amino acid residues with a predicted molecular weight of 6.6 kDa. The high identity of LjIL-8 with IL-8 in other organisms indicated that LjIL-8 should be a new member of the IL-8 family. By uorescent quantitative real-time PCR, mRNA transcript of LjIL-8 was detectable in all the examined tissues with higher level in spleen and head-kidney. The temporal expression of LjIL-8 mRNA in the spleen was up-regulated by lipop- olyssacharide (LPS) stimulation and reached the maximum level at 6 h post-stimulation, and then dropped back to the original level gradually. These results indicated that LjIL-8 was a constitutive and inducible acute-phase protein that perhaps involved in the immune defense of L. japonicus. Keywords Interleukin-8 Molecular cloning mRNA expression Lateolabrax japonicus Introduction Cytokines are low molecular weight proteins that serve as chemical messengers within the innate and adaptive immune systems. Closely related pro-inammatory chemotactic cytokines, called chemokines, attract and activate specic types of leukocytes, such as lymphocytes and neutrophils [1]. The chemokines are a superfamily of approximately 40 different small secreted cytokines that direct the migration of immune cells to sites of infection [2]. To date, four different subfamilies of chemokines have been identied, based on highly conserved amino-terminal cysteine residues. The two major subfamilies, CC and CXC, are distinguished by the separation of the rst two cysteines in their amino acid sequences by a single amino acid [3]. Inter- leukin-8 (IL-8) is a CXC chemokine, and the rst known chemokine, produced by monocytes/macrophages, bro- blasts, vascular endothelial cells, mast cells, epithelial cells, and a wide variety of tissue cells, upon exposure to inam- matory stimulants [4]. IL-8 mainly attracts neutrophils and induces them to release lysozomal enzymes [5], undergo a change in shape, triggers the respiratory burst [67], and increases the expression of adhesion molecules on the cell surface [8]. IL-8 contains four cysteines, the rst two of which are separated by one amino acid. Cysteine residues have an important role in the tertiary structure of proteins [9]. The neutrophil-attracting ability of IL-8 can be attributed to the presence of a Glu-Leu-Arg (ELR) motif adjacent to the CXC motif at its N-terminus, presumably by affecting its binding to specic receptors. CXCchemokines lacking an ELRmotif, in contrast, specically attract lymphocytes and not neutrophils. L. Qiu H. Zhang K. Yang S. Jiang (&) Biotechnology and aquiculture Laboratory, The South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 231 Xingangxi Road, Guangzhou 510300, Peoples Republic of China e-mail: Jiangsg@21cn.com L. Qiu The Centre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing 100039, Peoples Republic of China 1 3 Mol Biol Rep (2009) 36:10991105 DOI 10.1007/s11033-008-9284-6 With the development of the technique of gene cloning, molecular techniques have recently enabled the identi- cation of sh cytokine genes. Till now, the molecular structure of IL-8 has been determined in many sh since its initial isolation from humans, including rainbow trout (Oncorhynchus mykiss) [10], ounder (Paralichthys oli- vaceus) [11], lamprey (Lampreta uviatilis) [12], dogsh (Triakis scyllia) [13], black seabream (Acanthopag- rus schlegeli) (GenBank No. DQ000611). Japanese sea perch is an important cultured marine sh species in china. The main objectives of this study are (1) to clone the full length cDNA of IL-8 from Japanese sea perch and compare it to other known IL-8 genes to prove the existence of IL-8 in sea perch, (2) to investigate the expression pattern of IL-8 gene in the tissues, (3) to provide information about if LPS could induce the expression of IL-8 in Lateolabrax japonicus. Materials and methods Animals and immune challenge The healthy Japanese sea perch sh (L. japonicus), weighing about 200 g, were purchased from Guangzhou, Guangdong province, P. R. China. Fifty sh were main- tained in aerated seawater (salinity 30) at 2425C for 3 days before processing. For gene cloning, three sh weighing about 200 g were employed and kept in the tank. Two hundred microlitres of LPS (10 lg ml -1 , resuspended in water) was injected into the muscle of each sh. Six hours later, the spleen from the three sh was collected, mixed, and subjected to total RNA extraction. For the challenge experiment, 40 sh were employed. Two hundred microlitres LPS (10lg ml -1 ) were injected into the muscle of each sh and they were used as the stimulated group. The untreated sh and sh injected with 200 ll water were used as the blank and the control group, respectively. The injected sh were returned to seawater tanks, and three individuals from the blank, control, and stimulated group, respectively, were ran- domly collected at 2, 4, 6, 8, and 10 h post-injection. At each time point, the spleen from the three individuals were collected and mixed. They were subjected to total RNA extraction. Total RNA isolation Total RNA was isolated from the tissues of the shes using Trizol (Invitrogen, Japan) reagent following the protocol of the manufacturer, and resuspended in DEPC-treated water and stored at -80C. Synthesis of the cDNA rst strand cDNA was synthesized from 2 lg of mRNA by Moloney Murine Leukemia Virus reverse transcriptase (M-MLV, Promega, USA) at 42C for 50 min with oligo-dT adaptor primer (Table 1) following the protocol of the manufac- turer. The cDNA was used as template for PCR reactions. IL-8 gene cloning and sequencing Initially, PCR was performed using the cDNA prepared above as template, with the degenerated primers of Fe and Re (Table 1) designed according to the conserved regions of other known IL-8 gene sequences, in order to obtain the partial fragment of IL-8 gene from sea perch. The obtained PCR products were separated by 1.5% agarose gel, and then puried by PCR purication kit. The puri- ed PCR product was ligated with the PMD18-T vector (TaKaRa, Japan), and transformed into the competent Escherichia coli cells. The recombinants were identied through bluewhite color selection and screened with M13 forward and reverse primers. Three of the positive clones were sequenced on an ABI3730 Automated Sequencer (Applied Biosystem). Sequences generated were analyzed for similarity with other known sequences using the BLAST programs (http://www.ncbi.nim.nih. gov/). Having isolated a partial sea perch IL-8 sequence, the 5 0 and 3 0 ends of mRNA were obtained by rapid amplica- tion of cDNA ends (RACE) methods, using gene-specic primers shown in Table 1. In 3 0 RACE-PCR, PCR reaction was performed with primer F1 and adaptor primer (Table 1), while a second semi-nested PCR was carried out with primer F2 and the adaptor primer. In 5 0 RACE PCR, Table 1 Oligonucleotide primers used in experiments Primer name (5 0 ? 3 0 ) Nucleotide sequence Fe TGCCRCTGCATHGARAC Re ACTTGTTVATGACYHTCTTVACCCA F1 CAGAGAATCGGCACAGACAG F2 GGCACAGACAGCAGATAAGG R1 CTGTCTGTGCCGATTCTCTG R2 CACATCACCTGTCTTTTGGC oligo-dT adaptor GGCCACGCGACTAGTAC(T) 16 Adaptor GGCCACGCGACTAGTAC oligo-dG GGGGGGGGGGGGGGGH RactinF CAACTGGGATGACATGGAGAAG RactinR TTGGCTTTGGGGTTCAGG rIL8F GTGGTGCTCCTGGCTTTCTT rIL8R ATGGGTTTGCTCTCCGTCTC 1100 Mol Biol Rep (2009) 36:10991105 1 3 the rst strand cDNA obtained was tailed with poly (C) at the 5 0 ends using terminal deoxynucleotidyl transferase (TdT, TaKaRa, Japan). PCR was performed initially with primer R1 and Oligo-dG, followed by semi-nested PCR with R2 and Oligo-dG. The PCR products were gel-puri- ed, sequenced, and the resulted sequences were subjected to be analyzed. Generated sequences were analyzed for similarity with other known sequences using the BLAST program (http:// www.ncbi.nlm.nih.gov/BLAST/). Multiple sequence alignments were performed using the CLUSTAL W pro- gram at the European Bioinformatics Institute (http://www. ebi.ac.uk). Analyses of the deduced amino acid sequences utilized the programs PSORT (Kenta Nakai, National Institute Basic Biology), Scan Prosite (EXPASy Molecular Biology Server), and Predict Protein (EMBL-Heidelberg). The phylogenetic tree was constructed by the neighbor- joining (NJ) method using the Treecon program (Van de Peer and De Wachter 1994). Quantication of PmcathepsinC expression by quantitative real time PCR Real-time quantitative PCR (qRT-PCR) was performed with the SYBR Green 2 9 Supermix (Applied Biosystems, USA) on an ABI 7300 Real-Time Detection System (Applied Biosystems, USA) to investigate the expression of LjIL-8. Two specic primers, rIF and rIR (Table 1) were used to amplify a PCR product of 118 bp. b-actin was chosen as the reference gene for internal standardization. Two b-actin primers ractinF and ractinR (Table 1) were used to amplify a b-actin gene fragment of 110 bp as the internal control for qRT-PCR. The qRT-PCR amplica- tions were carried out in triplicates in a total volume of 20 ll containing 10 ll of 2 9 Supermix (Applied Biosys- tems, USA), 5 ll of the 1:5 diluted cDNA, 1 ll each of forward and reverse primer and 3 ll PCR grade water, The qRT-PCR program was 50C for 2 min, 95C for 10 min, followed by 40 cycles of 94C for 15 s, 61C for 30 s, 72C 30 s. Melting curve analysis of amplication prod- ucts was performed at the end of each PCR reaction to conrm that only one PCR product was amplied and detected. After the PCR program, qRT-PCR data from three replicate samples were analyzed with a 7300 System SDS Software v1.3.0 (Applied Biosystems, USA) to esti- mate transcript copy numbers for each sample. To maintain consistency, the baseline was set automatically by the software. The comparative C T method was used to analysis the expression level of LjIL-8. The C T for the target amplication of IL-8 and the C T for the internal control b-actin were determined for each sample. Differences between the C T for the target and the internal control, called DC T , were calculated to normalize the differences in the amount of total nucleic acid added to each reaction and the efciency of the RT-PCR. The blank group was used as the reference sample, called the calibrator. The DC T for each sample was subtracted from the DC T of the calibrator; the difference was called DDC T value. The expression level of LjIL-8 could be calculated by 2 -DDCT , and the value stood for an n-fold difference relative to the calibrator. The average cycle threshold (C T ) measurement for the three determinations were used in calculations of relative expression using b-actin as the internal control. The data obtained from RT-PCR analysis were subjected to one-way analysis of variance (one-way ANOVA) followed by an unpaired, two-tailed t-test. Differences were considered signicant at P\0.05. Results Cloning and sequence of LjIL-8 gene Three overlapping products were obtained by RT-PCR amplication (Fig. 1), which comprised the full-length sea perch IL-8 cDNA. The sequence consisted of 803 nucleo- tides including a 300 bp single open reading frame (ORF), a 159 bp 5 0 untranslated region (5 0 UTR) and a 359 bp 3 0 UTR. In the 3 0 UTR, there were ve RNA instability motifs (ATTTA), a 15 bp poly (A) tail and a putative polyade- nylation signal (AATAAA) which located 17 bp upstream of the poly (A) + tail. The open reading frame encoded a 99 amino acids precursor peptide with a molecular weight about 6.6 kDa, and theoretical point of 5.51. Four cysteine residues were present in the peptide at positions 34, 36, 61, and 78, conforming to the CXC pat- tern. Preceding the CXC motif were the residues Glu-Leu- His (ELH). Using the signal program, a putative signal peptide was predicted at the N-terminus of the sea perch peptide that would cleave between Gly 22 and Met 23 . Homology analysis Comparison of the trout sequence with some published CXC chemokine sequences using the BLAST program showed that this molecule was closest in identity to ver- tebrate IL-8 molecules (Table 2). The sea perch chemokine shared 39% amino acid identity to human IL-8, whereas identity to other human CXC chemokines was lower. Identity shared between the sea perch molecule and chicken IL-8 was also high relative to the chicken CXC chemokine. When compared to other sh chemokines, the sea perch molecule showed high identity to the fugu rubripes (85%) and black sea bream IL-8 (86%). Mol Biol Rep (2009) 36:10991105 1101 1 3 Multiple alignments shows the predicted sea perch sig- nal sequence aligns exactly with conrmed signal peptide cleavage positions within vertebrate IL-8 molecules. And all the four cysteine residues are in conserved positions with respect to vertebrate IL-8 (Fig. 2). Based on the nucleotide acid sequence of IL-8 genes, a phylogenetic tree was constructed (Fig. 3). All the piscine IL-8, such as those of ounder, black seabream, sea perch, and carp, were clustered together and formed a group apart from other animals IL-8 including the chicken, and other mammalians. The relationships displayed in the phylogenic tree were corresponded to their classication position. Tissue distribution of the LjIL-8 transcripts Real-time quantitative PCR was employed to quantify the LjIL-8 expression in the tissues of heart, gill, head-kidney, spleen, liver, and brain. The amplication specicity for LjIL-8 and b-actin was determined by analyzing the dis- sociation curves. Only one peak presented in the dissociation curves for both the LjIL-8 and b-actin gene (data not shown), indicating that the amplications were specic. LjIL-8 mRNA was found to be constitutively expressed in all the examined tissues with signicant variation of expression level. There was a high-level expression of LjIL-8 in spleen and head-kidney, while a low-level expression in gill, liver, heart, and brain. The highest level of IL-8 expression was detected in spleen (Fig. 4). Quantication of LjIL-8 mRNA expression after LPS stimulation The temporal expression of the LjIL-8 transcript in spleen of sh after LPS stimulation was shown in Fig. 5. During the rst 2 h after LPS stimulation, the IL-8 mRNA remained at a low level. At 4 h after stimulation, the expression of the LjIL-8 was up regulated and there was a signicant increase in the relative abundance of LjIL-8 mRNA. At 4 and 6 h post-LPS stimulation, the LjIL-8 gene expression level was 7.5- and 9.1-fold higher than that observed in the control group, respectively. As time Fig. 1 The Japanese sea perch IL8 sequence. The arrow indicated the signal peptide cut site, and the signal peptide was in box; the CXC motif was in the highlighted; the RNA instability motif were underline and the polyadenylation signal sequence was highlighted and underlined; the spark showed the stop code Table 2 Homology of IL-8 protein of sea perch with other known chemokines amino acids Species Similarity (%) Identity (%) E-value Accession number Human IL-8 59 39 6e-11 Z11686 Human CXCL1 55 36 6e-10 J03561 Human CXCL2 56 37 5e-10 M57731 Sheep IL-8 58 38 6e-11 X78361 Chicken IL-8 69 46 1e-13 NM205498 Chicken K60 62 45 5e-14 Y14971 Zebrash IL-8 77 58 9e-27 AY340959 Rainbow trout IL-8 78 63 2e-28 AY160981 Common carp IL-8 80 62 2e-29 DQ453125 Common carp CXC 79 63 1e-27 AJ550164 Flounder IL-8 88 72 8e-34 AF216646 Flounder CXC 87 72 2e-34 AB070837 Black sea bream IL-8 89 86 1e-36 DQ000611 Fugu rubripes IL-8 92 85 2e-38 AB125645 1102 Mol Biol Rep (2009) 36:10991105 1 3 progressed, the expression of LjIL-8 mRNA decreased and almost recovered to the original level at 10 h post-stimu- lation. The expression of LjIL-8 in control and blank groups did not signicantly change at all time point. An unpaired, two-tailed t-test with blank and challenged groups showed statistically signicant difference in LjIL-8 gene expression at 1, 6, and 8 h (P\0.05) post-stimula- tion. However, no signicant difference was observed in other time point in challenge group (Fig. 5). Discussion This study presents the cloning of IL-8 in the Japanese sea perch (L. japonicus) stimulated with LPS using the tech- nique of homology. This cDNA contained an open reading Fig. 2 Multiple alignments of Japanese sea perch IL8 with other known IL8 amino acids sequences, residues aligned by the CLUSTAL W program. Identical and similar sites were shown with sparks (*) and dots (. Or : ) , respectively; the arrow indicated the signal peptide cut site; the conserved cysteines were highlighted, and ELR motif which associated with neutrophil attracting in mammalian was in the box Black sea bream 81 76 Sea perch 64 Fugu rubripes 60 Flounder 100 Atlantic cod Common carp Common carp CXC 100 Chicken Human Cat 100 Sheep 86 Pig 59 0.1 Fig. 3 A molecular phylogenetic tree of IL-8 proteins based on the NJ method with values for each internal branch determined by bootstrap analysis with 1,000 replications. The values indicate percentages along the branch 0 10 20 30 40 50 60 70 Heart Gill Brain Liver HK Spleen Tissues T h e
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I L - 8 Fig. 4 qRT-PCR analysis of IL-8 expression in various tissues of Japanese sea perch. HK: head-kidney * ** ** ** 0 1 2 3 4 5 6 7 8 9 10 blank control 1 2 4 6 8 10 Stimulated time(h) T h e
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I L - 8 Fig. 5 qRT-PCR analysis of IL-8 expression in different stimulated time point Mol Biol Rep (2009) 36:10991105 1103 1 3 frame (ORF) of 300 nucleotides that translated into a predicted 99 amino acid protein. Several characteristics within the putative sea perch peptide sequence ratify it as a CXC chemokine. First, in the deduced amino acid sequence, four cysteine residues that are essential for the formation of the tertiary structure and consequently function [14] were identied at position 35, 37, 61, and 78, which lie in conserved positions when compared to other CXC chemokines. Importantly, a single arginine residue (Arg 36 ) separated the rst and second cysteines, creating the classical CXC motif. Second, the rst 23 amino acid of sea perch IL-8 were predicted, using the signal program, to represent a signal sequence that is cleaved following Gly 23 . A high percentage of hydrophobic residues in the N-terminal portion of sea perch IL-8, an attribute of signal sequences, reinforce this nding and is consistent with sea perch IL-8 being a secreted molecule, as observed with other chemokines [15]. The IL-8 pre- cursors of other vertebrates also have dened signal peptides, whose cleavage points appear to align exactly [16] with the predicted signal cleavage point of LjIL-8 (Fig 2). An ELR motif immediately upstream from the CXC sequence is characteristic of chemokines that attract neutrophils and have angiogenic effects [1718]. In con- trast to IL-8 molecules of mammals and chicken, LjIL-8, in common with other sh sequences such as ounder [11] and trout [10], does not possess this motif. Instead, the sea perch sequence contains an ELH motif representing a conservative substitution, the ounder containing SLR, black seabream containing ELH, carp containing DPR, trout containing DLR (Fig. 2). Whether this change will affect the functionality of the protein will require further investigation. But when the ELR motif was mutated to DLR, a 100-fold decrease in biological activity was observed during studies with synthetic mammalian IL-8 peptides [19]. It suggests that although a DLR motif is functional, it is signicantly less potent than an ELR motif. We postulate that the lack of an ELR motif may be char- acteristics of IL-8 genes in sh. An additional feature supporting the sea perch sequence as a chemokine is the presence of AU-rich motifs within its 3 0 UTR. Messenger RNA containing AU-rich sequences such as ATTTA motif, has been shown to have reduced stability in comparison to those lacking AU-rich sequences. Transiently expressed genes, such as cytokines, often contain AU-rich elements repeated within the 3 0 UTR of their mRNAs [2022]. Five ATTTA motifs are located within the 3 0 UTR of LjIL-8 suggesting that this transcript is unstable and agreeing with observations of mammalian chemokines. The LjIL-8 precursor, when compared to mammalian CXC chemokines shows higher similarity to IL-8 mole- cules. Relative to other available sh chemokine sequences, high identity is observed with the IL-8 molecule of the Fugu rubripes supporting the view these are related molecules. Phylogenetic analysis of CXC chemokines shows that LjIL-8 groups with other sh IL-8 sequences supported with bootstrapping. This nding support the conclusion that the CXC chemokine isolated during this study is an IL-8 equivalent in sea perch. IL-8 mRNA could be detected in various tissues of unchallenged sea perch using qRT-PCR, indicating that constitutive IL-8 expression occurs in many sea perch tis- sues. However, there is some degree of tissue specic expression for this gene because the IL-8 transcript in the brain of the unchallenged sh is very weak and almost could not be detected directly. This result is same as the report of rainbow trout [10]. Constitutive expression of IL-8 has been reported in mammalian macrophages, although expression was induced with bacteria and LPS [2325]. LPS acts as a powerful stimulator of innate immunity in diverse eukaryotic species [2627]. In the present study, after LPS treatment, the expression level of LjIL-8 was not changed signicantly during the rst 2 h after LPS stimulation, and then up-reg- ulated and increased signicantly at 4 h after LPS stimulation. The expression level of LjIL-8 at 6 h post-LPS stimulation was the highest, and from the 6 h post-LPS stimulation the expression level became to decrease. The result indicted that LjIL-8 was a constitutive and inducible acute-phase protein. 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