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Structure of a Fish (Rainbow Trout) Growth Hormone Gene and Its Evolutionary Implications

L. B. Agellon, S. L. Davies, T. T. Chen, and D. A. Powers


PNAS 1988;85;5136-5140
doi:10.1073/pnas.85.14.5136
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Notes:
Proc. Nati. Acad. Sci. USA
Vol. 85, pp. 5136-5140, July 1988
Evolution

Structure of a fish (rainbow trout) growth hormone gene and its


evolutionary implications
(internal repeats/nucleotide sequence/evolution)
L. B. AGELLON*t, S. L. DAVIES*t, T. T. CHENt§, AND D. A. POWERS*t§
*Department of Biology and tThe Chesapeake Bay Institute, The Johns Hopkins University, Baltimore, MD 21218; and §Center for Marine Biotechnology,
University of Maryland, Baltimore, MD 21202
Communicated by C. Ladd Prosser, March 11, 1988

ABSTRACT We have isolated and sequenced a clone from A B C D E F


a rainbow trout (Salmo gairdneri) genomic library that carries
a gene encoding a fish growth hormone (GH). This gene spans
a region of =4 kilobases, nearly twice that of mammalian GH 23.1*
genes. The trout GH gene is comprised of six exons, in contrast
with five exons in mammals. The additional intron in the fish 9.45
gene interrupts translated regions that are analogous to the last AM
exon of its mammalian counterpart. In addition, the alleged 6.50 ^,
internally repeating sequence in mammalian GH, prolactin
(Prl), or placental lactogen (PL) is not observed in the predicted 4.3.
polypeptide sequence of fish GH. Direct repeats that flank
exons I, HI, and V of the mammalian GH, Prl, and PL genes
are absent in the fish GH gene. These findings indicate that the
rainbow trout GH gene structure does not support the current
hypothesis that internally repeated regions in GH, Prl, and PL
arose from a small primordial gene. 23
2.00
Growth hormone (GH), prolactin (Prl), and placental lactogen
(PL) form a family of polypeptides with related structure and
function (1-3). GH and Prl are synthesized mainly by soma-
totrophs and lactotrophs, respectively, in the anterior pituitary
gland, whereas PL is synthesized by syncytiotrophoblasts in
the mammalian placenta. In vertebrates, GH is responsible for
stimulating growth, whereas Prl primarily functions as a
reproductive hormone (4). The biological activity of mamma-
lian PL is the least understood of these three hormones. One
possible function is to augment the carbohydrate-regulating FIG. 1. Blot analysis of RTGH14B2 and trout testes DNA.
properties of GH during pregnancy (5). Rainbow trout testes DNA (10 Atg) and RTGH14B2 DNA (5 ng) were
The notion that these three hormones share a common treated with various restriction endonucleases, resolved on a 0.8%
ancestry was initially suggested because of their related agarose gel, and then transferred onto a nitrocellulose membrane.
biological and immunological properties (6-8). Based on the The probe (EcoRI/Pst I fragment of pAF51) (11) was labeled to a
structure of these hormones and the genes that encode them, specific activity of 1 x 10i dpm/,ug by random priming (12) and
hybridized to the blotted DNA overnight. After washing, hybridizing
it has been proposed that they evolved from a common fragments were visualized by autoradiography. Lanes A-C, trout
ancestor, which, in turn, arose by repeated duplication of a testes DNA; D-F, RTGH14B2 DNA; A and D, EcoRI; B and E,
smaller gene or coding region (3, 9, 10). The majority of the EcoRI and HindIII; C and F, EcoRI and Pst I. Mobility of size
data used to generate this hypothesis has been derived from markers (AHindIII fragments) is shown (in kbp) on the left.
mammalian species (6-8). To test the applicability of this
evolutionary model to vertebrates in general, we have cloned the random priming method (12) and used as a probe for
and sequenced a gene encoding GH in the teleost fish, rain- plaque hybridization screening of the library (13). Hybrid-
bow trout (Salmo gairdneri).¶ ization was under stringent conditions: 50% formamide/1%
NaDodSO4/1 M NaCI/10% dextran sulfate, 42TC. DNA from
positive clones was purified and further characterized by
MATERIALS AND METHODS restriction endonuclease mapping and DNA blot analysis (14).
One clone, RTGH14B2, which carries an insert of 14.8 kbp,
Molecular Cloning and Isolation of Genomic Clones. DNA was selected for sequence analysis.
used in the construction of the trout genomic library was Sequence Analysis. The 6.8-kbp Pst I fragment of
purified from testes dissected from a single trout. The library RTGH14B2 that hybridized with the GH cDNA probe was
was prepared by partial digestion of testes DNA with EcoRI, subcloned into the Pst I site of plasmid pUC8 (15). Ordered
cloning into Charon 4, and amplification in Escherichia coli
strain LE 392. The rainbow trout GH cDNA [the 900-base- Abbreviations: GH, growth hormone; Prl, prolactin; PL, placental
pair (bp) Pst I/EcoRI fragment of pAF51] (11) was labeled by lactogen.
tPresent address: Columbia University College of Physicians and
Surgeons, 630 West 168th Street, New York, NY 10032.
The publication costs of this article were defrayed in part by page charge IThe sequence reported in this paper is being deposited in the
payment. This article must therefore be hereby marked "advertisement" EMBL/GenBank data base (IntelliGenetics, Mountain View, CA,
in accordance with 18 U.S.C. §1734 solely to indicate this fact. and Eur. Mol. Biol. Lab., Heidelberg) (accession no. J03797).
5136
Evolution: Agellon et al. Proc. Natl. Acad. Sci. USA 85 (1988) 5137
gt caagttacag ggttgtgtct gtctgtgtga -301
-300 ctgagtgtaa ctttgttcat tcattatgtc ctagacaaca gaggtttgtg tcgtctgtgt tttgaccctc atttgtcaag tcatcgagta cgttttttgt -201
-200 ttttaggagt cacctcttcc cgaactcatg gaaaaattca tgattgattt gacgcattat actgattgtt ccatagtcac atacaaaaac aggtcccatc -101
-100 ggcgagaggt ggtacatgga gaaaatctca tgtttcctcc tgttgataca ttaaaacatg tgttctccat ctataaaaac agtggcccca aacaagcggc -1
1 AACATACTGA ACCGACCACC ACACTTTCAA GTGAAGTAAT CATCCTTGGC MTTAAGAGA AAAAMTGGG ACAAGgtaaa ccagctttta ttttattttt 100
101 ttaagtggga agtcagtgta ccatttaata ccatttaact ttaacattta atcactgagg caggggccaa gaaggcagag aaagagtgaa caagtaatgt 200
201 actgccatga gggtataatc tacttacaca gaaccacttc ctttaacaac ctaaccatgt gatctattag atttacattt gagttattta gcagagactc 300
301 ttatccagag cgacttacag gagcaattag ggttaagtgc cttgctcaag ggcacatcaa cagatttctc acctagtcag ctcagggatt caaaccapta 400
401 acctttcaet tactReccca actctcttaa tcgctaggct aatgagaaag atagcaaatt gagaatatct tactattgag aatatcttac taacatgtcg 500
501 caacatcatt tgacttactc gtttttatac atttcttatt ttctgtcatc tctcttttag TGTTTCTGCT GATGCCAGTC TTACTGGTCA GTTGTTTCCT 600
601 GGGTCAAGGG GCGGCGATGG AAAACCAACG GCTCTTCMC ATCGCGGTCA ACCGGGTGCA ACACCTCCAC CTATTGGCTC AGAAAATGTT CMCGACTTT 700
701 gtaagacagc ttttgaatct tcttttgaca cagcagataa tgtttcagag gtgtttcctc ttctttgtag acaagtgtcc tcttcacgca aaccgagcgg 800
801 caaaacattc tctctcccgt ctttgtgatt ttgtgcagGA AGGCACCCTG TTGCCTGATG AACGCAGACA GCTGAACAAG ATATTCCTGC TGGACTTCTG 900
901 TAACTCTGAC TCCATCGTGA GCCCAATCGA CMGCAGGAG ACTCAGAAGA GTTCAgtaag ttacctggct gagacaatcc tccatgatgc acgattccaa 1000
1001 catgaataat agggcatctc aatttgaaca atcgatacaa cttagtcatt agttattggg caagcagatc cccgattgtc taaactccat gggtaatata 1100
1101 ctgtagataa gcagaaccag catcatgtat ggtggaaatt aaatctagcc atgacaggga gttttaaatt gtacacttaa aatcggcagt aaaataatgc 1200
1201 tatacctcag tgccttcaaa aacaaccaca tatcatagtc cttgtaagta aaacccatca ctctctaaat cggcggtttc tctacgtcta cattctccag 1300
1301 ccatgtatca tgtaaatgat atggcatctc aagctgtaca attacatctc aacttcattt tctaataatc tgtggtttct ctacatctac acacacagGT 1400
1401 CCTGAAGCTG CTCCATATCT CTTTCCGCCT GATTGAATCC TGGGAGTACC CTAGCCAGAC CCTGACCATC TCCAACAGCC TAATGGTCAG AMCTCCAAC 1500
1501 CAGATCTCTG AGAAGCTCAG CGACCTCAAA GTGGGCATCA ACCTGCTCAT CMAGgtaatg gtcaatgacc atttgtggtg acgcactttg tcgattttta 1600
1601 actcaaatac ttctagtaag ttgaagtcag tcaatgaaaa gtcattatta cttcaaatgt ctatgtggta ctggctcaaa tctaaatgag tcacatcaat 1700
1701 gcaatttttt aaagttataa gaaatgaact ttttacccag catgctctac tacaggtaga ttttttggaa ttgtttttaa tatctgtgtt tttgcatgta 1800
1801 cagtacattg agtgattgat tgattgattc atcttatgct acacacagat atatgacgta catttttcta cattttcaca aaggtaaata acatacaagg 1900
1901 taccgaaatt ttgcaaacct acttgcaggc ctgatgtggc ctgtaaacca tgagtttcag gccactgtat ttgggaaaag ctacacctca aaataaggcc 2000
2001 ttataagata tgtaatatat tgttataaag agtttaacta taatgataat atttgcctag aaaatcactt gaaggccaca ggactgaaaa ttaatgacaa 2100
2101 caaacatgat aattctacaa ttcactcaaa aggcaaggca cacttggaaa gtatattgga gacatgtctt agtgggggca ttactaaaaa atgtcaagct 2200
2201 gataccactc aaatctcaac cctctacagg gcgactctat aggtttgagt aatgactata aaatcacttt aagcgactgt agtcagattc tgtatattaa 2300
2301 gtgcaacggt ttcctcaaaa gttttgagta atgacagcac attsgggttt acaatattgt tgttatcttc cactgacatg aaagtgaaat acaactatac 2400
2401 tttcctagtt agaaaacata at taggacc acgtatgtct cttctcagca gatctttcag cgctttccat tgtgacgggg taactcacct catcgatcat 2500
2501 cactaatagt gactatatca gtaacacccc attcaatgac'tgaatattgg cccattcaag gacatttatg catgtgtctt ttgccatatg tgcttgtaga 2600
2601 atggccaaat aaacaagtat tgttatgcac acctccaccc caccatgcat ctctctctgt ctcccacagG GGAGCCAGGA TGGCGTACTG AGCCTGGATG 2700
2701 ACAATGACTC TCAGCATCTG CCCCCCTACG GGAACTACTA CCAGAACCTG GGGGGCGACG GCAACGTCAG GAGGMCTAC GAGCTGTTGG CCTGCTTCAA 2800
2801 GAAGGACATG CATAAGgtgg aagaccatgt tgccttcaat tgcatgtgcc ttcctatatt tcctacagtg cgattgtttt tttgtgatct ctattgtgaa 2900
2901 gtatctttat aggtctttaa cccatttgtt attactatta ttgttcattg atcaagactg gtctcgagaa agtcctggtg acttagaaca ttcacattaa 3000
3001 aatgtgtcaa ctataaccta ttcttcttgt cccccccccc cccccccccc ccacccccaa gGTTGAGACC TACCTGACCG TCGCCAAGTG CAGGAAGTAT 3100
3101 CTGGAGGCCA ACTGCACTCT GTAAACGTGG GCCGGAGCGG AGCAGCAAGA GCCTGTCTCC AGGGTTCGGT TTCCCAGATA CAGATGAGAC CITTCCCTGC 3200
3201 ACTGAAGAGC ATGTTCAATT GAGATTCTCC ATTAGGCATG T1TmTlTAG TCTAGAGTAG ATTTCATTTG GATCTGGTAG AGCCTGGCTC CAGGGGTr 3300
3301 CAAGCATTTT GCATTTTGTT CTCTGAAATC AACTTTCTAT GATTTTCACT CCATTACTCG GAGCTACCAC TGATCCATGG ACATTITAGA TTAGTACATT 3400
3401 TATTGAAAAG GTTTAAAT ATGTCTTATT TAGATATATG ATTCAAGGTG GTGGTGCCAT TTATGCATAA ATTAATArTT AGAGGTGAAA TGGGAACATG 3500
3501 TAGAGCTCCA ATCTTTAGGT ACGTCCACAG ATGGATAATA TAITTTTAGAG TCATTTCCTT GAAGTATTTT CATTCCTTTA TCTTACTGTT TGAAACGAAT 3600
3601 AGTGATTCGT TTTCAAA CIrcTcTGCg gtacatgatc tcttggctac tatttgctat ctttcaaatc aacatttttg ttacaagttt ctagccccaa 3700
3701 cattcctatt gtgtcccttg gacaacttaa ggctggattc aattcgtatc gcagacgctc cattgaaatg taaaggcaat gttccctgcg ttcgtggaga 3800
3801 cggcattcac cgcaaacgct gcatatgtca ggctcgttc

FIG. 2. The nucleotide sequence of the trout GH gene was determined from a series of clones carrying deletions originating from either end
of the Pst I fragment containing the trout GH gene. The gene spans a region of -4000 bp in the trout genome. The "TATA box" and the poly(A)
signal are shown overlined and in bold print. The putative cap site (+ 1), located 22 nucleotides downstream from the TATA box, was determined
by aligning the GH genomic and cDNA sequences. Exons are shown in uppercase; introns and flanking regions are in lowercase. Sequences
capable of forming hairpin structures and a tandemly repeated sequence are underlined.
deletions (150-200 bases) originating from either end of the M13mpl9 (17). The nucleotide sequence of the GH gene was
6.8-kbp Pst I fragment were created by using BAL-31 (16) and determined from these deletion derivatives by using the
resulting fragments were recloned into either M13mpl8 or Sanger sequencing procedure (18).
5138 Evolution: Agellon et al. Proc. Natl. Acad. Sci. USA 85 (1988)

RESULTS introns (intron 1, 485 bp; intron 2, 138 bp; intron 3, 443 bp;
intron 4, 1115 bp; intron 5, 245 bp) make up the trout GH
Isolation and Characterization of the Rainbow Trout GH gene. The intron boundaries are located at positions 76/560,
Gene. Thirty clones (out of 500,000 clones screened) were 701/838, 956/1398, 1555/2669, and 2817/3061. All donor and
isolated from a rainbow trout genomic library by virtue of acceptor sites resemble consensus sequences (30). The ac-
their hybridization to the 900-bp EcoRI/Pst I fragment of the ceptor site of intron 5 is interesting in that it is preceded by
rainbow trout GH cDNA clone (pAF51) (11). One clone an exceptionally cytidine-rich region.
(RTGH14B2), which contains a 14.8-kbp EcoRI fragment, The sequence was searched for perfect and imperfect,
was selected for detailed analysis. Fig. 1 shows the hybrid- direct and inverted repeats >6 nucleotides. A 17-bp tandem
ization pattern of trout testes DNA and RTGH14B2 DNA. repeat, beginning at position +458, and a region of dyad
Trout testes DNA digested with EcoRI produced several symmetry (stem of 8 bp, loop of 6 nucleotides) beginning at
fragments, ranging in size from 6 to 15 kbp, which hybridize position + 395 were found in intron 1. Two other regions of
with pAF51. The largest of these fragments comigrates with dyad symmetry were found in intron 4, the largest of the six
the EcoRI fragment carried by clone RTGH14B2. The hy- introns. The first region, capable of forming a stem and loop
bridization pattern of RTGH14B2 DNA treated with EcoRI with 7 bp and 7 nucleotides, respectively, begins at position
and HindIII or with EcoRI and Pst I is a subset of the pattern + 2394. The second region, capable of forming a stem of 11
observed in the corresponding genomic lanes (Fig. 1). The bp and a loop of 8 nucleotides, begins at position + 2420. The
additional hybridizing fragments in the trout testes DNA (Fig. significance of these structures is unknown.
1, lanes A-) represent the other copy of the GH gene Alignment of trout and human GH gene sequences, so that
(unpublished data) and not the PrI gene. Salmonid GH and Prl the polypeptides share maximum sequence similarity, indi-
share no detectable immunological relatedness (19). cates that the first four exons ofboth genes encode analogous
The smallest single fragment of clone RTGH14B2 shown in portions of the GH polypeptide. Trout exons V and VI, which
Fig. 1 that carries the GH transcription unit is a 6.8-kbp Pst are interrupted by the additional intron (i.e., intron 5), encode
I fragment. After subcloning this fragment, deletion deriva- a region ofthe GH polypeptide that is equivalent to the region
tives originating from either end of the fragment were encoded by the last exon of the human GH gene. The
constructed and sequenced (Fig. 2). introduction of intron 5 into the trout gene likely took place
The organization of the trout GH gene was determined by after the divergence of fish and tetrapods because the
aligning the trout GH cDNA sequence (11) with the corre- mammalian GH, Prl, and PL genes all contain five exons (9,
sponding regions of the GH genomic gene. The 5' region of 27-29, 31). Testing of this hypothesis, however, must await
the GH gene contains the sequence 5' TATAAAAA 3' (20) 22 the characterization of the trout Prl gene.
nucleotides from the putative transcription start site. Anal-
ysis of the 5' sequence, up to 332 nucleotides upstream from
the cap site, did not reveal the existence of any sequence DISCUSSION
similar to other consensus promoter elements. The DNA The current model for GH gene evolution is schematically
binding sites of the glucocorticoid- and thyroid hormone- represented in Fig. 4. Niall et al. (3) were first to suggest that
receptor complexes have been localized in the mammalian a small primordial gene was repeatedly duplicated to form a
GH genes (21, 22). Sequences with structural similarity to larger gene that became the "precursor gene." We have
these sites were not obvious in the trout GH gene. However,
it is currently not clear whether thyroid and glucocorticoid Phase / -IZI- primordial gene
hormones control fish GH gene expression in a manner
similar to that in mammals (23-25). The poly(A) signal 5'
AATAAA 3' (26) is located at the 3' region of the gene -in-it Ii-
(position + 3615). Thus, the rainbow trout GH gene spans a
region of =4000 bases, nearly twice the size of its mammalian -t-I + [}C}
counterparts (Fig. 3).
Six exons (exon 1, 75 bp; exon II, 140 bp; exon III, 117 bp; V- intron
exon IV, 156 bp; exon V, 147 bp; exon VI, 568 bp) and five + -{I}
intron
p p

I ME I m I rtGH

E E
1 lhE..I hGH I III IV V
~ Lii Z~uZ
rc
precursor gene

E E
Phase //
duplication, divergence
I bGH

E H I GH Prl PL
I rGH FIG. 4. Current model for evolution of the GH gene family,
adapted from Barta et al. (9), Miller and Eberhardt (7), Selby et al.
FIG. 3. Organization of fish and mammalian GH genes. Restric- (10), and Slater et al. (8). During phase I, a primordial gene (or coding
tion fragments containing GH genes are shown. Boxes represent region) was repeatedly duplicated. Subsequently, an intervening
exons; lines between boxes are introns. The trout GH gene contains sequence separating two of the duplicated domains was lost. Later,
an additional intron (intron 5) that interrupts a region equivalent to two other domains were incorporated to form the precursor gene
exon 5 of mammalian GH genes. The region of the trout gene that containing five exons. In phase II, the precursor gene was dupli-
encodes the untranslated portion ofGH mRNA is approximately four cated. Divergence gave rise to the genes that presently encode GH
times larger than its mammalian counterpart. rtGH, trout; hGH (27), and Prl and eventually PL. Hatched boxes represent exons that are
human; bGH (28), cow; rGH (9, 29), rat; E, EcoRI; H, HindlI; P, thought to have separate origins. Roman numerals represent exons
Pst I. Scale bar represents 500 bp. in the present gene structure.
Evolution: Agellon et A Proc. Natl. Acad. Sci. USA 85 (1988) 5139

Table 1. Alignment of the internally repeating regions in human GH and corresponding regions in trout GH

Exon Encoded polypeptide sequence Identity Similarity


Human GH

E1/E2 15 L R - - : : A Hf1L H LA®I7: (i E 32 30.0 51.3


E2 93 LXJ-- -:: V LV)
(N
E5A 128 LIEDG : :WP F K(
S D 147
E5B 163 Y - - ::C F M D K V : L RRII 181

Trout GH

El 12 N R -- --V©H L H L)®QM F -i 29 10.9 39.1


E2 89 - _ _ I - - Q I 103
E5A 121 S D G V L S L D H L ft3Y i) Y 143
E5B/E6 159 i)KM3-- --CFKK(bM H KrnE( Y -L V® 176

Human GH compared to Trout GH

E1/E2 15 Lj1J- - - - A H L A F D T -
E 32 30.4 47.8
El 12 N RI- V Q
-
L H LL
- -
Q K M (i- E29

E2 93[LR - - - - S V F Nf L ®G[-@
)- S®G 110 21.7 52.2
E2 89 NJ-T-- ---TI~ S L )R IJ-9-()I 103

E5A 128 L --[P R® I F®Q Y - S L®D 147 13.0 43.5


E5A 121 S4DGVLVWL DC S Q(P9L(9P Y G N9Y 143

E5B 163 LY - - - - TFV-[ R®V 181 43.5 60.9


E5B/E6 159 W A - - - - CLFIKD M H[V - L T (y)A 176

Alignment of the internally repeated regions in human GH, equivalent regions in trout GH, and comparison between the human and trout
GH segments are shown. The internally repeated regions in human GH were taken from Niall et al. (3). Gaps (-) were introduced in the sequences
to obtain the best alignment. Each gap was counted as one position in the calculation of % similarity and % identity. Spaces (:) in the human
GH sequence were added for clarity of alignments and were not included in the calculations. Identical amino acid residues are shown in boxes.
Amino acid residues scored as similar (circled) are based on Dayhoffs highly acceptable substitutions (32).
designated these events as phase I. Subsequent duplication marks the end of phase I. At the beginning of phase II, the
and divergence of this precursor gene, which we designate as entire precursor structure was duplicated and subsequent
phase II, led to the evolution of GH, Prl, and PL. divergence gave rise to the genes that encode GH and Prl (see
The GH evolutionary model has been reviewed in detail bottom of Fig. 4).
elsewhere (6-8). We shall briefly summarize the key features The existence of an additional intron (intron 5) in the trout
of this model. Much of the rationale for phase I (Fig. 4) of the GH gene is a notable difference between fish and mammalian
GH evolutionary model is based on the existence of apparent GH genes. At first inspection, the presence of intron 5 in the
internally homologous regions within GH, Prl, and PL (3). In trout GH gene might appear to support phase I of the GH
human GH, for example, the first two of the four regions of evolutionary model. Closer examination of the sequence
internal homology are each encoded by separate exons data, however, reveals that the location of intron 5 interrupts
(exons II and IV) but the last two regions are encoded by one the last presumptive repeated segment in human GH (ESB,
larger exon (exon V). The latter exon may have been between Lys-172 and Val-173; Table 1). Intron 5 is likely a
generated after the deletion of the intervening sequence that recent introduction to the trout GH gene. Two observations
separated the two reduplicated coding domains either prior to support this hypothesis. (i) The event that gave rise to GH
or after its incorporation into the gene. The two other exons and Prl genes (phase II) occurred around 350-400 million
(exons I and III) of the human gene are thought to have years ago, before the divergence of fish and tetrapods. The
separate origins. Exon I, which eventually took over the existence of GH and Prl in these two groups of animals attests
controlling functions of the gene, was incorporated at the 5' to this notion. (it) Mammalian genes for GH and Prl are
upstream region, and exon III, which conferred the hormone organized in a similar manner-i.e., both genes have five
with carbohydrate-regulating properties, was incorporated exons and four introns. Thus, intron 5 of the trout GH gene
between the originally duplicated regions. Imperfect direct could not have existed prior to the divergence of fish and
repeats have also been found flanking exons I, III, and V of tetrapods.
rat GH, rat Prl, human GH, and human PL genes. This Comparison of regions in the trout GH polypeptide se-
observation was taken as further evidence that these regions quence, equivalent to those described by Niall et al. (3), do
arose by separate insertion events by a mechanism analogous not show the existence of internally homologous regions
to DNA transposition. The formation of the precursor gene (Table 1). Moreover, direct repeats similar to those flanking
5140 Evolution: Agellon et al. Proc. Natl. Acad. Sci. USA 85 (1988)
exons I, III, and V of the rat GH, rat Prl, human GH, and 130.
human PL genes were not found in the trout GH gene. 8. Slater, E. P., Baxter, J. D. & Eberhardt, N. L. (1986) Am.
Therefore, although the similarity between the polypeptide Zoo!. 26, 939-949.
sequences of fish GH and fish PrI (33, 34) is consistent with 9. Barta, A., Richards, R. I., Baxter, J. D. & Shine, J. (1981)
Proc. Natl. Acad. Sci. USA 78, 4867-4871.
phase II of the model (Fig. 4), the trout GH gene structure is 10. Selby, M. J., Barta, A., Baxter, J. D., Bell, G. I. & Eberhardt,
inconsistent with phase I. N. L. (1984) J. Biol. Chem. 259, 13131-13138.
In human GH, the apparent internal repeats share 30%o 11. Agellon, L. B. & Chen, T. T. (1986) DNA 5, 463-471.
identical amino acid residues and 51.3% similarity when 12. Feinberg, A. P. & Vogelstein, B. (1983) Anal. Biochem. 132,6-
conservative substitutions are taken into account (Table 1). 13.
By comparison, the equivalent regions in the trout GH have 13. Benton, W. D. & Davis, R. W. (1977) Science 196, 180-182.
14. Maniatis, T., Fritsch, E. F. & Sambrook, J. (1982) Molecular
only 10.9%o identical residues and 39.1% similarity. Further- Cloning:A Laboratory Manual (Cold Spring Harbor Lab., Cold
more, the groups of similar amino acid residues among the Spring Harbor, NY).
selected regions in trout GH are not in the same category of 15. Vieira, J. & Messing, J. (1982) Gene 19, 259-268.
acceptable substitutions (32) as those found in the apparent 16. Poncz, M., Solowiejczyk, D., Ballantine, M., Schwartz, E. &
internally repetitive regions of human GH. Significant se- Surrey, S. (1982) Proc. Natl. Acad. Sci. USA 79, 4298-4302.
quence similarity, however, is observed between equivalent 17. Norrander, J., Kempe, T. & Messing, J. (1983) Gene 26, 101-
regions of trout and human GH (Table 1). These comparisons 106.
18. Sanger, F., Nicklen, S. & Coulson, A. R. (1977) Proc. Natl.
suggest that the presumed internal repeats in the human GH Acad. Sci. USA 74, 5463-5467.
are not present in trout GH. 19. Agellon, L. B., Chen, T. T., van Beneden, R. J., Sonstegard,
Nicoll et al. (35) have shown that similarity between R. A., Wagner, G. F. & McKeown, B. A. (1986) Can. J. Fish.
randomly selected regions in human GH, human PL, or ovine Aquat. Sci. 43, 1327-1331.
Prl can be demonstrated by the introduction of appropriate 20. Breathnach, R. & Chambon, P. (1981) Annu. Rev. Biochem. 50,
gaps in the sequence. In their example, the selected regions 349-383.
have at least the same extent of similarity as those described 21. Moore, D. D., Marks, A. R., Buckley, D. I., Kapler, G.,
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It would be premature to generate an alternate model to 9021-9025.
account for the trout GH gene structure until the GH gene 23. Martial, J. A., Baxter, J. D., Goodman, H. M. & Seeburg,
structure from at least one organism, common to both P. H. (1977) Proc. Nat!. Acad. Sci. USA 74, 1816-1820.
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technical assistance. This project was supported by a grant (DCB- 263, 211-214.
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