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A high-throughput mass spectrometric immunoassay system for the analysis of proteins directly from
plasma is reported. A 96-well format robotic workstation was used to prepare antibody-derivatized affinity
pipette tips for subsequent use in the extraction of
specific proteins from plasma and deposition onto 96well format matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF
MS) targets. Samples from multiple individuals were
screened with regard to the plasma protein transthyretin (TTR), followed by analysis of the same plasma
samples for the transthyretin-associated transport
protein, retinol-binding protein (RBP). Analyses were
able to detect the presence of posttranslationally modified TTR and RBP, as well as a mutation present in
the TTR of one individual. Subsequent analyses of
wild-type and mutated TTR using enzymatically active MALDI-TOF MS targets were able to identify the
site and nature of the point mutation. The approach
represents a rapid (100 samples/2 h, reagent preparation-to-data) and accurate means of characterizing
specific proteins present in large numbers of individuals for proteomic and clinical/diagnostic purposes.
2001 Elsevier Science
0003-2697/01 $35.00
2001 Elsevier Science
All rights reserved.
chromatography (LC/LC) approaches (1 4). Such analyses are impressive in their ability to simultaneously
interrogate hundreds to thousands of proteins present
in complex biological media. When used in control versus disease-state studies, the approaches are able to
identify proteins participating in, or serving as markers for, disease states. The identification process serves
as the starting point for subsequent studies geared
toward, among other things, the more detailed structural characterization of proteins. Due to the numerous genetic, transcriptional, and posttranslational
variations possible for any given protein, it is essential
that such follow-up studies investigate large numbers
of samples and are able to characterize the structure of
a protein to the fullest degree possible.
Once a protein is identified and deemed relevant to
further study, it is possible to replace 2D PAGE and
LC/LC with affinity selection in preparation for direct
mass spectrometric characterization. In this manner,
proteins of interest are extracted from the biological
medium to the exclusion of the rest of the complex
mixture. Ideally, the extraction process is free of hindrances from nonspecific binding of other proteins/compounds and exhibits an overall concentrating effect
toward the targeted protein. Indeed, numerous past
reports have demonstrated the potential of using affinity isolation in combination with mass spectrometry for
the analysis of proteins (518). Many of these reports
focus on the use of matrix-assisted laser desorption/
ionization time-of-flight mass spectrometry (MALDITOF MS), which is used universally in the identification of affinity-isolated proteins (11, 12), the
tion/ionization time-of-flight mass spectrometry; MSIA, mass spectrometric immunoassay; b2m, -2-microglobulin; TTR, transthyretin; RBP, retinol binding protein; GA, glutaraldehyde; TFA,
trifluoroacetic acid; wt, wild type; MW, molecular weight.
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KIERNAN ET AL.
ing the antibody linkage, the frits were rinsed vigorously with HBS and packed while still wet into widebore P-200 pipette tips and stored in HBS buffer. In the
second method, frits were activated with GA as in the
first method and incubated with 40-kDa polylysine (5.0
mg/mL in phosphate buffer) for 19 h with gentle agitation. The frits were rinsed vigorously with phosphate
buffer and then activated with GA, derivatized with
antibody, and packed into pipette tips using the procedures described for the first method. Using the third
method, amine frits were packed into the pipette tip for
subsequent in-robotic (Beckman, Multimek 96, Fullerton, CA) amplification and antibody linkage. The tips
were first amplified by repetitively flowing GA (25%
solution in HBS, pH 7.5) through the tips (100 L, 120
repetitions), followed by rinsing with HBS (100 L, 20
repetitions), exposure to polylysine (0.1 mg/mL in HBS,
100 L, 120 repetitions), and rinsing (HBS, 100 L, 20
repetitions). The amplified tips were then activated
with GA (25% solution in HBS, pH 7.5, 100 L, 120
repetitions), exposed to anti-TTR antibody (0.05
mg/mL in HBS, 20 L, 120 repetitions), and rinsed
with HBS (100 L, 20 repetitions). The same in-robotic
procedure was used for the preparation of anti-RBP
tips using rabbit anti-RPB polyclonal IgG (Dako, Catalog No. A0054). The total time needed for in-robotic
derivatization was approximately 50 min.
Sample Preparation
Whole blood samples were collected from six healthy
male individuals. Samples (44.7 L) were acquired
under sterile conditions through a lancet-punctured
finger using a heparinized microcolumn (Drummond
Scientific Co., Broomall, PA). The whole blood was
immediately combined with 200 L HBS and centrifuged for 1 min (at 7000 RPM, 2500g) to pellet red
blood cells. The supernatant (plasma/HBS) from each
sample was distributed in 25-L aliquots randomly
among the 96 wells of a titer plate, each well already
containing 100 L of HBS.
The plasma/HBS samples were addressed in parallel
using the 96-well format pipetting workstation
equipped with either anti-TTR or anti-RBP affinity
pipette tips. Sample incubation consisted of 20 cycles
(aspiration and dispensing) of 100 L of each sample
through the affinity pipette tips. After incubation, tips
were rinsed using HBS (5 cycles, 100 L), acetonitrile
(3 cycles, 100 L), and doubly distilled water (10 cycles,
100 L). Retained species were eluted by drawing 4 L
of MALDI matrix solution (saturated aqueous solution
of -cyano-4-hydroxycinnamic acid, in 33% (v/v) acetonitrile, 0.2% (v/v) trifluoroacetic acid) into the tips and
depositing it directly onto a 96-well formatted MALDITOF target that had been treated as previously described (16). Samples were allowed to air dry prior to
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FIG. 2. Affinity pipettes optimization. (A) Mass spectrum of diluted human plasma. (B) Mass spectrum obtained using an affinity pipette
tip prepared via bulk derivatization by glutaraldehyde (GA) activation of amine frits, followed by exposure of the frits to anti-TTR antibody
and loading of the affinity frits into pipette tips. (C) Mass spectrum obtained using an affinity pipette tip prepared via bulk derivatization
by GA activation of amine frits and linkage of 40-kDa polylysine, followed by GA activation of the polylysine, linkage of anti-TTR antibody
and loading of the affinity frits into the pipette tips. (D) Mass spectrum obtained using an affinity pipette tip prepared via robotic
derivatization by GA activation of amine frits and linkage of 40-kDa polylysine, followed by GA activation of the polylysine and linkage of
anti-TTR antibody. (E) Mass spectrum obtained from an affinity pipette tip prepared in the same manner as in (D), except for the use of
anti-RBP antibody.
the TTR:RBP complex, which in turn leads to diminished transport of vitamin A. These variants include
point mutations in both TTR (Ile84Ser) (35) and RBP
(Ile41Asn and Gly74Asp in different alleles in a single
individual) (36) and posttranslationally truncated versions of RPB (two variants: one missing the C-terminal
leucine (RBP-C-Leu) and the second missing two Cterminal leucines (RBP-C-LeuLeu) (37).
Affinity Pipette Tip Optimization
Initial studies were performed to optimize the affinity pipette tips for the direct extraction of TTR and
RBP from plasma. Based on past findings (16), aminefunctionilized pipette tips were chosen as base chemistries from which additional derivatization schemes
were applied and tested. Figure 2 shows a comparison
of methods for preparing the anti-TTR affinity pipette
tips. Figure 2A is a mass spectrum of diluted human
plasma, which is given to illustrate the need to extract
TTR and RBP from plasma in preparation for MALDITOF MS characterization. Signals from neither TTR
nor RBP are observed in the spectrum. Figure 2B is a
spectrum obtained using an affinity pipette tip prepared by glutaraldehyde activation of amine frits, followed by exposure of the frits to anti-TTR antibody.
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FIG. 3. High-throughput MSIA analysis of transthyretin and retinol binding protein using human plasma samples from six individuals
randomly arranged in a 96-well titer plate. (A) Mass spectra resulting from the MSIA analysis utilizing anti-TTR derivatized pipette tips.
Shown is the region of the singly charged TTR signals. Highlighted cells show spectra with resolvable parent ion differences between each
other. (B) Mass spectra resulting from the MSIA analysis of the same samples utilizing anti-RBP derivatized pipette tips. Shown is the region
of the doubly charged RBP signals. The highlighted cells represent two spectra with resolvable parent ion differences.
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REFERENCES
1. Jensen, O. N., Larsen, M. R., and Roepstorff, P. (1998) Proteins
Suppl., 74 89.
2. Dunn, M. J. (1997) Biochem. Soc. Trans. 25, 248 254.
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