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1145
GSTM1, GSTT1 and CYP1A1 Gene Variants and Oral Cancer Risk in Pashtun Population of Pakistan.
RESEARCH ARTICLE
Genetic Susceptibility to Oral Cancer due to Combined
Effects of GSTT1, GSTM1 and CYP1A1 Gene Variants in
Tobacco Addicted Patients of Pashtun Ethnicity of Khyber
Pakhtunkhwa Province of Pakistan
Zakiullah1&*, Ahmadullah2&, Muhammad Khisroon2, Muhammad Saeed1*, Ajmal
Khan2, Fazli Khuda1, Sajid Ali3, Nabila Javed4, Muhammad Ovais6, Nosheen
Masood5, Nasir Khan Khalil1, Mohammad Ismail1
Abstract
Associations of GSTT1, GSTM1 and CYP1A1 gene variants with risk of developing oral cancer were evaluated
in this study. A case-control study was conducted in Pashtun population of Khyber Pakhtunkhwa province of
Pakistan in which 200 hospital based oral cancer cases and 151 population based healthy controls exposed to
similar environmental conditions were included. Sociodemographic data were obtained and blood samples were
collected with informed consent for analysis. GSTM1 and GSTT1 were analysed through conventional PCR
method while specific RT-PCR method was used to detect CYP1A1 polymorphisms. Results were analyzed for
conditional logistic regression model by SPSS version 20. The study shows that patients with either GSTM1 or
GSTT1 null genotypes have significantly higher risk of oral cancer (adjusted odds (OR): (3.019 (1.861-4.898)
and 3.011(1.865-4.862), respectively), which further increased when either one or both null genes were present in
combination (adjusted odds (OR): (3.627 (1.981-6.642 and 9.261 (4.495-19.079), respectively). CYP1A1 rs4646903
gene variants individually showed weak association OR: 1.121 (0.717-1.752); however, in the presence of GSTM1
and/or GSTT1 null genotypes further increasing the association (adjusted odds (ORs): 4.576 (2.038-10.273), 5.593
(2.530-12.362) and 16.10 (3.854-67.260 for GSTM/GSTT null and CYP1A1 wild type, GSTM/GSTT either null
and CYP1A1 variant alleles, and all 3 gene polymorphisms combinations, respectively). Our findings suggest
that presence of GSTM1 and/or GSTT1 null genotypes along with variant alleles of CYP1A1 may be the risk
alleles for oral cancer susceptibility in Pashtun population.
Keywords: Oral cancer risk - GSTT1 - GSTM1 and CYP1A1 gene variants - Pashtun population - Pakistan
Asian Pac J Cancer Prev, 16 (3), 1145-1150
Introduction
Oral cancer is the fourth most common cancer in the
world (Amtha et al., 2009; Gupta and Johnson, 2014).
It is estimated that over 400,000 cases occur annually
with a wide variation in global burden. Its incidence in
South and South East Asia is amongst the highest in the
world. Incidence is also on the rise in Western and Eastern
Europe, Latin America and Pacific regions (Ariyawardana
and Johnson, 2013). In Pakistan oral cancer is the second
most common malignancy after breast cancer and is
significantly higher than other member states of the World
Health Organizations Eastern Mediterranean (WHOEMRO) Region (Bile et al., 2010).
Tobacco use and alcohol drinking are the main
independent risk factors for the development of head
Department of Pharmacy, 2Department of Zoology, 4Institute of Radiotherapy & Nuclear Medicine,6Centre of Biotechnology &
Microbiology, University of Peshawar, Peshawar, 3Department of Biotechnology, Abdul Wali Khan, University Mardan, 5Fatima
Jinnah Women University, Rawalpindi, Pakistan *For correspondence: saeedrph@upesh.edu.pk; zakiullah@upesh.edu.pk
1
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Zakiullah et al
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DOI:http://dx.doi.org/10.7314/APJCP.2015.16.3.1145
GSTM1, GSTT1 and CYP1A1 Gene Variants and Oral Cancer Risk in Pashtun Population of Pakistan.
Figure 1. Representative Melting Peaks of RT-PCR of CYP1A1 rs4646903 polymorphism: Pink peaks represent
CYP1A1 wild type (T/T), while blue peaks show variant alleles (T/C and C/C)
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Zakiullah et al
Statistical analysis
Chi-square (2) test was used to detect whether there
were significant (=0.05) differences in frequencies of
genes. Odds Ratios (OR) for each polymorphism using
binary logistic regression model were estimated with 95%
confidence intervals (CIs), and the difference in genotype
prevalence and association between case and control
group were assessed independently as well as adjusted
for confounding factors. Age, gender, place of residence,
tobacco type used, amount of tobacco used per day and
age at first exposure were included as covariates as well
as all the possible genotypes studied. GSTM1 and GSTT1
were categorized on the basis of presence and absence
(null genotype) of the gene, while CYP1A1 rs4646903
polymorphism was classified into homozygous wild type
and variant allele containing genotypes. Wild type was
used as reference group to assess the effects of the different
alleles. Analyses were performed by SPSS (Version 20.0).
Results
Subject characteristics
Demographic and other subject characteristics are
shown in Table 1. Mean age of healthy subjects (controls)
and esophageal cancer patients was 56.1407.91 and
54.889.83 years, respectively (t test p value=0.931).
Table 1. Demographic Characteristics of the Subjects
Variables
Controls
Cases
p-value
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0.304
0.931
0.786
0.853
0.45
0.931
DOI:http://dx.doi.org/10.7314/APJCP.2015.16.3.1145
GSTM1, GSTT1 and CYP1A1 Gene Variants and Oral Cancer Risk in Pashtun Population of Pakistan.
Table 2. Crude and Adjusted Odds Ratios (OR) of GSTs and CYP1A1 and Oral Cancer
Genotype/allele
Genetic polymorphism
Cases N Control N
(%)
(%)
GSTM1
Wild type
41 (20.5) 65 (43.0)
Null
159 (79.5) 86 (57.0)
GSTT1
Wild type
105 (52.5) 116 (76.8)
Null
95 (47.5) 35 (23.2)
CYP1A1
Wild type
124 (62.0) 96 (63.6)
Polymorphism
76 (38.0) 55 (36.4)
Combinations 2 genes
GSTM/GSTT both wild type
20 (10.0) 51 (33.8)
GSTM/GSTT either1 expressed
124 (62.0) 79 (52.3)
GSTM/GSTT both null
76 (38.0) 21 (13.9)
Combination 3 genes
GTSM/GSTT/ CYP1A1 wild type
9 (4.5) 27 (17.9)
GSTM/GSTT null and CYP1A1 wild type 69 (34.5) 53 (35.09)
GSTM/GSTT either null and CYP1A1
103 (51.5) 64 (42.4)
All 3 gene polymorphisms
19 (9.5)
7 (4.6)
Discussion
It is well recognized fact that some individuals are
more susceptible to certain types of cancers within similar
environmental conditions. Different factors are involved
in the initiation of carcinogenesis. These include but
not limited to polymorphisms in genes responsible for
the expression of carcinogen metabolizing enzymes,
environmental exposure (such as tobacco use and alcohol
consumption) and dietary and life style habits of the
individuals. GSTs and CYP1A1 are among the most
important enzymes involved in the processing of tobacco
related carcinogens. However, polymorphisms in GSTM1,
GSTT1 and CYP1A1 genes and their association with
oral cancer have shown varying results (Nosheen et al.,
2014). Association has been reported in Asians but not in
Caucasian population in several meta-analysis studies.
These observations have shown the importance of ethnic
differences among the study population (Hirschhorn, 2002,
Gupta and Johnson, 2014). Our study has thrown light on
the involvement of genetic, ethnic and demographic factor
differences in the incidence of oral cancer. Present data
shows that genetic polymorphisms in GSTM1, GSTT1 and
CYP1A1 genes have important contribution towards the
occurrence of oral cancer in Pashtun population. GSTM1
and GSTT1 have shown a 3-fold independent association,
while CYP1A1 is weakly involved (see table 1).
Combined effects of both GSTs alone, and in combination
with CYP1A1, further increase the association. The risk
Crude OR
p-value
(95% CI)
Adjusted OR
(95% CI)
p-value
Ref.
2.931 (1.831-4.693) 0
3.019 (1.861-4.898) 0
Ref.
2.999 (1.876-4.793) 0
3.011 (1.865-4.862) 0
Ref.
1.070 (0.691-1.657) 0.762 1.121 (0.717-1.752) 0.617
Ref.
3.422 (1.890-6.194
0
3.627 (1.981-6.642) 0
8.986 (4.424-18.253) 0
9.261 (4.495-19.079) 0
Ref.
4.145 (1.871-9.183) 0
4.576 (2.038-10.273) 0
5.182 (2.382-11.273) 0
5.593 (2.530-12.362) 0
8.143 (2.647-25.054) 0
16.10 (3.854-67.260) 0
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Acknowledgements
We acknowledge Institute of Radiotherapy and
Nuclear Medicine (IRNUM), Peshawar for supply of
blood samples. We also wish to thank Mr. Zahid Ali, Mr.
Zahir Shah and Mr. Waheed-ur-Rahman, who facilitated
the collection of control blood samples from different
districts of Khyber Pakhtunkhwa. We also acknowledge
Department of Zoology, University of Peshawar for
provision of some of the laboratory facilities available
at their end.
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