742RE: [cameratraps] Data Analysis software

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Tim van Berkel

Jan 30, 2013
Hi Asaf,

Here an excerpt from the manual I am writing. There is some overlap with
what Alex mentioned, naturally!

Image management software

Spreadsheet applications
Spreadsheet applications such as Microsoft Excel are easy to use but, as data entry has
to be done manually, require a lot of time entering data.
Especially when there are a lot of photos to analyse. I dont recommend using this
data management system.
Self-made customisable Microsoft Access Databases
Using Microsoft Access is the most suitable way of creating your own customised
management dataset. However, it requires time and a good understanding of
Microsoft Access to create such a database and to learning how to extract EXIF data
into the database takes specialist knowledge.
Only if you have very specific requirements for your survey, or if you have too much
time on your hands, would I create my own database. Better alternatives are available.
Camera Base
Developed by Mathias Tobler, San Diego Zoo Institute for Conservation Research.
Camera Base is a tool that helps biologists manage the complete data from multiple
camera trap surveys and provides tools for different types of data analysis including
capture-recapture, occupancy, activity patterns and diversity. It is based on Microsoft
Access and automatically extracts EXIF data. It prepares the data for analysis in
PRESENCE, MARK, DENSITY, EstimateS and CAPTURE. It has numerous tools
such as a map to view spatial distribution of cameras, activity patterns, and can
perform queries such as photo reports, number of photos for each species, information

summaries for each survey and many more. An additional bonus is that multiple
surveys can be entered in the database.
This is by far the most complete and convenient camera trap software available.
http://www.atrium-biodiversity.org/tools/camerabase/
PestSmart Remote Camera Trapping Database
Developed by the Invasive Animals CRC. This camera trapping database is designed
to store camera trap site data directly related to the camera trapping data sheet. The
database is not an image storage and analysis program but provides a basic foundation
for recording and storing site data. Based on Microsoft Access.
http://www.feral.org.au/pestsmart/monitoring/
Small Wild Cat Conservation Software Program
Developed by Jim Sanderson. A DOS operating program that manages, codes stores
and analyses camera trap images. http://www.smallcats.org/CTA-executables.html
Timelapse Image Analyser
Prof. Saul Greenberg, University of Calgary (Computer Science). The tool
automatically goes through all images and extracts information such as dates and
times; it categorizes unusual images including dark (night time) and corrupted ones; it
displays a series of 'codes' specific to the biologist's project, where the biologist can
fill in codes by typing, selecting from menus or (for counting) simply by clicking on
objects in the image.
http://grouplab.cpsc.ucalgary.ca/cookbook/index.php/Demos/TimelapseCoder

WWF-Malaysia Camera-Trap Database: Developed by Shariff Mohamad, WWFMalaysia. A very useful and easy to manipulate database. It includes automatic
extraction of EXIF data. Microsoft Access database.
http://myrimba.org/2012/01/05/toolbox_update_5/

Image coding software

Here is a list of freely available image coding software.

Bulk Rename Utility Allows bulk renaming of photos. Can incorporate EXIF data
http://www.bulkrenameutility.co.uk/

ExifPro - An image browser application that can help you display, describe, tag, and
manipulate your collection of photographs http://www.exifpro.com

ExifToolGUI - tool for viewing/editing metadata inside image files

http://u88.n24.queensu.ca/exiftool/forum/index.php/topic,2750.0.html

ReNamer A file renaming tool, which offers all the standard renaming procedures,
including prefixes, suffixes, replacements, case changes, as well as removing contents
of brackets, adding number sequences, changing file extensions, etc. Supports EXIF
meta tagging http://www.den4b.com/?x=downloads&product=renamer

PhotoSpread - Developed through a collaboration between the Stanford Computer

Science Department and the Biological Sciences Department. PhotoSpread enables
users to view and rapidly assign metadata to large numbers of photographs.
http://www.stanford.edu/~eabelson/photospread.htm

Auto Photo Organiser - Auto Photo Organizer organizes digital photos

automatically. The software could create year, month, and day folders by date picture
taken and then copy or move photos to corresponding folder automatically.
http://download.cnet.com/Auto-Photo-Organizer/3000-2193_4-75059233.html

Free photo editing software

Photos from camera traps are sometimes too dark, too bright, or simply not optimally
processed. There are a number of free software programs available that allow editing
images at wish. There really is no need to pay for expensive software such as Adobe
Lightroom or Photoshop. These applications are just about as good.

RawTherapee - Does just about everything Adobe Camera Raw or Lightroom can
do. http://rawtherapee.com/blog/rawtherapee-4.0.9-released

Photoscape - This application will do just about everything a person needs in the way
of changing brightness, contrast, colour balance, size, cropping and adding a frame as
the cherry on the cake. There are clone- and spot-removal tools, as well as red-eye
correction. www.photoscape.org

From: cameratraps@... [mailto:cameratraps@...] On Behalf Of Alex Diment

Sent: 29 January 2013 9:37 AM
To: cameratraps@...
Subject: RE: [cameratraps] Data Analysis software

Hi Asaf,

The options for image management seem to be:

Camerabase:
http://www.atrium-biodiversity.org/tools/camerabase/

WWF Malaysia Access database:

http://myrimba.org/2012/01/05/toolbox_update_5/

the DeskTEAM software (not publicly available):

http://www.teamnetwork.org/help-deskteam

Some combination of an image tagging program (e.g. Picasa or ExifPro) and spreadsheet like
Excel:
http://www.exifpro.com/ (this is what I use)

Photospread: http://www.stanford.edu/~eabelson/photospread

(seems dormant)

Programs aimed at hunters released via manufacturers:

http://www.scoutingassistant.com/Default.aspx
http://www.reconyx.com/page.php?id=200

Can anyone add any other options to the list?

Any comments on these programs - on ease of use, and utility for biologists?

From: cameratraps@... [mailto:cameratraps@...] On Behalf Of i3i3123

Sent: 28 January 2013 10:07 AM
To: cameratraps@...
Subject: [cameratraps] Data Analysis software

Hi All,
I am at the start of a long monitoring program of animal activity in desert oasis in
Israel and was wondering how people analyse the huge number of pictures taken by
the cameras. Are there any ready made software available for creating the image
database?
I am looking for a simple software that will import the EXIF and present the picture
for the user to manually add the species name of the animal within the photo and then
automatically create a database for analysis.
I found CameraBase 1.5.1
Anything else out there?
Thank you
Asaf