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Food Chemistry
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Analytical Methods
a r t i c l e
i n f o
Article history:
Received 20 April 2012
Received in revised form 4 July 2012
Accepted 7 July 2012
Available online 20 July 2012
Keywords:
Octopus
Octopus vulgaris
Dosidicus gigas
Eledone cirrhosa
Fast real-time PCR
Authentication
a b s t r a c t
The TaqMan real-time PCR has the highest potential for automation, therefore representing the currently
most suitable method for screening, allowing the detection of fraudulent or unintentional mislabeling of
species. This work describes the development of a real-time polymerase chain reaction (RT-PCR) system
for the detection and identication of common octopus (Octopus vulgaris) and main substitute species
(Eledone cirrhosa and Dosidicus gigas). This technique is notable for the combination of simplicity, speed,
sensitivity and specicity in an homogeneous assay.
The method can be applied to all kinds of products; fresh, frozen and processed, including those undergoing intensive processes of transformation. This methodology was validated to check how the degree of
food processing affects the method and the detection of each species. Moreover, it was applied to 34 commercial samples to evaluate the labeling of products made from them.
The methodology herein developed is useful to check the fulllment of labeling regulations for seafood
products and to verify traceability in commercial trade and for sheries control.
2012 Elsevier Ltd. All rights reserved.
1. Introduction
The common octopus, Octopus vulgaris, is a kind of octopus
cephalopod family Octopodidae that is found worldwide in tropical
and semitropical waters from near shore shallows to as deep as
200 m (Caddy, 1983).
The generic term octopus encompasses a range of soft mollusc
species included in the taxonomic order of the Octopods. Their
importance as a shery resource is widely recognized throughout
the world as a culinary product highly appreciated by the excellent
avor of their meat, its high content of calcium, vitamin A and B,
and low content in calories.
Fishing is carried out throughout the year and octopus products
can be found in worldwide markets, both fresh and frozen, cooked
or uncooked and also canned.
The high demand for octopus products has produced a gradual
increase in catches over the years resulting in a decrease in the
world population of this resource. This increase is reected by the
global catch data of octopuses from the FAO. In fact, it has grown
from capture values of 35,844 tons recorded in 1950 to values of
372,872 tons recorded in 2009 (FAO-FishStat, 2006). This has
prompted the authorities to establish closed seasons, minimum
sizes, Total Allowable Catches (TAC), number of traps and limited
Corresponding author. Tel.: +34 986 469 301; fax: +34 986 469 269.
E-mail address: montse@anfaco.es (M. Espieira).
0308-8146/$ - see front matter 2012 Elsevier Ltd. All rights reserved.
http://dx.doi.org/10.1016/j.foodchem.2012.07.056
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Table 1
Samples included in this work.
Family
Species
Octopodidae
Bathypolypus bairdii
Bathypolypus pugniger
Eledone cirrhosa
Eledone moschata
Enteroctopus doeini
Octopus aegina
Octopus delippi
Octopus dollfusi
Octopus fangsiao
Octopus macropus
Octopus maya
Octopus membranaceus
Octopus mimus
Octopus vulgaris
Ommastrephidae
Dosidicus gigas
Illex argentinus
Illex coindetii
Illex illecebrosus
Nototodarus sloanii
Ommastrephes bartrami
Todarodes lippovae
Todarodes pacicus
Todarodes sagittatus
Todaropsis eblanae
Loliginidae
Loligo vulgaris
Loligo reynaudi
Loligo forbesii
Loligo gahi
Loligo opalescens
Loligo pealeii
Loligo plei
Loligo bleekeri
Alloteuthis media
Alloteuthis subulata
Loliolus japonica
Lolliguncula diomedeae
Lolliguncula panamansis
Uroteuthis chinensis
Uroteuthis duvauceli
Sepiidae
Cirroteuthidae
Sepia aculeata
Sepia apama
Sepia bertheloti
Sepia dollfusi
Sepia elegans
Sepia esculenta
Sepia hierredda
Sepia lycidas
Sepia ofcinalis
Sepia orbignyana
Sepia pharaonis
Sepietta oweniana
Inioteuthis japonica
Rossia palpebrosa
Sepiola atlantica
Sepiola rondeletii
Cirroteuthis mulleri
Gonatidae
Gonatus fabricii
cations of the partial 16S RNA gene fragment were carried out
using the primers and the protocol described previously by Bonnaud, Boucherrodoni, and Monnerot (1994, 1997). PCR products
were sequenced in both directions to avoid sequencing errors
using the same primers of PCR amplication. DNA automatic
sequencing in an ABI Prism 3130 (Applied Biosystems) was
performed in both strands in a nal volume of 10 ll with BigDye
Terminator cycle sequencing ready reaction v1.1 (Applied Biosystems). Thermal cycle sequencing reaction and the subsequent
sequencing product cleanup by ethanol precipitation were carried
out in accordance with the manufacturers instructions (Applied
Biosystems). Raw data were analyzed with Sequencing Analysis
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Canned
Prepared
Dishes
Frozen
Fresh
Species labeled
Unidentied
Unidentied
Unidentied
Unidentied
Unidentied
Unidentied
Unidentied
Dosidicus gigas
Unidentied
Unidentied
Dosidicus gigas
49% Squid and 22% Octopus
Unidentied
Dosidicus gigas
Dosidicus gigas
Unidentied
Unidentied
Unidentied
Unidentied
Unidentied
Unidentied
Unidentied
Unidentied
Unidentied
Unidentied
Octopus spp.
Octopus vulgaris
Octopus vulgaris
Octopus spp.
Octopus spp.
Unidentied
Octopus spp.
Unidentied
Unidentied
Octopus vulgaris
Dosidicus gigas
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Eledone cirrhosa
Dosidicus gigas
Octopus vulgaris
Octopus vulgaris
Dosidicus gigas
Dosidicus gigas
Octopus vulgaris
Dosidicus gigas
Dosidicus gigas
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Octopus vulgaris
Octopus maya
Octopus maya
Octopus maya
Octopus mimus
Octopus mimus
Eledone cirrhosa
E. cirrhosa
D. gigas
+
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and 10 lL of TaqMan Fast Advanced Master Mix (Applied Biosystems). The amount of primers and probe were optimized and
the nal volume was adjusted with Ambion Nuclease-free water
(Ambion). The reactions were performed in triplicate on DNA
samples in MicroAmp Optical 96-well reaction plates (Applied
Biosystems) with MicroAmp optical caps (Applied Biosystems)
using the ViiA 7 Real-Time PCR System (Applied Biosystems).
Amplication was carried out with the following conditions:
95 C for 20 s, and 40 cycles each of 95 C for 1 s and 5060 C
for 20 s.
The specicity and sensitivity for each of the three designs were
independently evaluated. The specicity was evaluated by testing
the amplication of DNA from each species with the other outgroups (Table 1). The limit of detection (LOD) is dened as the lowest concentration of DNA which yields a uorescent signal signicantly different from the negative control. For this, a serial dilution
of DNA from each species was performed with DNA of other species (Table 1) in levels ranging from 250 ng to 0.001 pg and the
uorescence signal was determined for each of the three primerprobe set. Dilutions were prepared by adding DNA of target species
to DNA from different species until completing the nal amount of
250 ng. All measurements were performed in duplicate from three
samples independently.
2.4. Methodological validation
Individual samples of O. vulgaris, E. cirrhosa and D. gigas were
authenticated on the basis of their morphological features. Different products, e.g., rings, tubes and arms, all in different preparations (fried, frozen, coated in butter and canned) were elaborated
from these individuals. The most extreme treatment that was applied to the samples was the sterilization in a horizontal retort
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Table 3
Primers and probes used in this work.
Oligonucleotide name
Sequence 50 30
OVUL F2
OVUL R2
OVUL 2
OVUL 16SF
OVUL 16SR
OVUL 16S
ELEDONE 16SF
ELEDONE 16SR
ELEDONE 16S
DGIG F
DGIG R
DGIG
Gene
Amplicon size
Tm
COIII
111 bp
55 C
16S
109 bp
58 C
16S
153 bp
58 C
ITS 1
116119 bp
60 C
Table 4
Efciency and sensibility.
Oligonucleotide name
LDO
Efciency
Slope
R2
OVUL F2
OVUL R2
OVUL 2
OVUL 16SF
OVUL 16SR
OVUL 16S
ELEDONE 16SF
ELEDONE 16SR
ELEDONE 16S
DGIG F
DGIG R
DGIG
0.05 pg/nl
85.15%
3.73
0.996
0.05 pg/nl
99%
3.34
0.999
5 pg/nl
91.53%
3.543
0.989
0.5 pg/nl
105%
3.1868
0.999
tion of the uorogenic probe and the sensitivity of detection (Bustin, 2004).
In all samples of O. vulgaris, E. cirrhosa and D. gigas, the Ct values
obtained were 25 2 and 22 2 for O. vulgaris designs, COIII and
16S RNA gene specic designs respectively, and 18 2 and 15 2
respectively for E. cirrhosa and D. gigas specic designs when
100 ng of fresh and frozen template were used. In processed products, this Ct was higher but always less than 32 due to the DNA
fragmentation, in all designs. All depends on the degree of processing of each sample analyzed, and which depends in turn on temperature, pressure and additives added to the sample, so the Ct
value will vary as a function of these parameters without being
able to dene a representative mean value. Also, in the cross-reactivity analysis, no false positive results were observed, even under
the most severe conditions used in the test. This was documented
by Ct values, where Ct values found were always >40 in all non-target species under study for each design.
Robust and precise assays are usually correlated with high PCR
efciency. For each of the three designs, the efciency was calculated based on the slope of the standard curve obtained using
DNA serial dilutions with template of known concentration (from
250 to 0.025 ng) as templates for real-time PCR (Bustin, 2004).
The efciency (E) of each reaction was determined by the following
equation E = (10(1/slope) 1) 100 (Table 4 and Fig. 1).
With respect to efciency, the optimal assay values range between 90% and 110%. The value of the efciency obtained for the
specic assay of O. vulgaris with the primer/probe set designed
from COIII was outside these values (85.15%), while that obtained
with the set designed from 16S RNA gene was better (99%). It
should be noted also that although the value of R2 was optimal
for both the primer/probe set designed from COIII as created from
the 16S gene (0.996 and 0.999 respectively), these criteria established that the primers/probe set designed from 16S gene was better and, therefore, that the specic assay for O. vulgaris designed
with this set was also better.
2443
Fig. 1. Amplication plots of the 10 dilution series of the D. gigas target with primer/probe set DGIG.
2444