Académique Documents
Professionnel Documents
Culture Documents
Baader, F. 236
Baier, A. C. 269
Barker, R. G. 25
being (see existence or entity)
belief 8, 9, 78, 79, 81, 92-96, 104,
105, 307, 308
Berg, J. 244
Bernauer, J. 248
BFO (Basic Formal Ontology) 17,
174, 175, 196, 204, 281
biasism 285-287, 289, 290, 291,
296, 299
Bibel, W. 63
biological classification (see
classification, biological)
biological process (only in reference
to the GO upper-level category)
36, 304-305
biology / biological 11, 13, 15, 17,
19, 21-36, 54, 77, 80, 88, 94, 105,
126, 128, 131, 133, 142, 144,157,
160, 169-171, 198, 200-207, 211217, 219, 220, 221, 223, 225-227,
229-235, 384, 285, 290, 291-296,
303
biomedical informatics (see
informatics, biomedical)
biomedicine (see domain,
biomedical)
Bittner, T. 16, 125, 127, 134
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Bodenreider, O. 91, 103
bona fide (see object, bona fide)
Bonitz, H. 179
Bonnet, C. 202, 216
Borges, J. L. 159, 163, 168, 171
Brachman, R. 114
Brentano, F. 180, 306
Bucher, T. 189
Buck, R. C. 215
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28-31, 73, 77, 114, 136, 137, 177,
222, 223, 299
construct (noun) / construction (of
reality) 71, 76, 78
content 8, 21, 25, 28, 70, 76, 98,
293, 297-299, 307
formal 46, 49, 50, 51, 56
material 49, 50, 51, 56
continuant 18, 32, 69, 113, 164,
173, 175, 180, 183-186, 188, 194196, 219, 221, 225-231, 256, 257,
259, 267, 268, 276, 281
controlled vocabulary (see
terminology)
CUI (Concept Unique Identifier)
99-100
cumulativeness / cumulative 7, 86,
107, 146-153, 157
Cuvier, G. 215-216
Cyc 22, 62, 70, 73, 74, 78, 167,
174, 175, 177, 196
Descartes, R. 16
description logic (DL) (see logic,
description)
determinable-subsumption (see
relation, is_a)
disjunctive / disjunctiveness (of
classification system) 163, 167
disposition 32, 33, 177, 184, 241
domain 11-19, 21-25, 28, 31, 34,
39, 44, 46, 54, 60-62, 73, 77, 79,
85, 88, 90, 92, 94, 95, 101, 102,
105, 107, 118, 120, 123, 125,
138, 140-146, 149, 153, 158, 160,
169, 170, 174, 185, 197, 198,
201, 202, 204, 211, 212, 219,
220, 222, 224, 227, 234, 243,
289, 291, 296, 303, 309
biomedical domain 22, 26, 27,
84, 104, 197
biological domain 19, 24, 34,
203, 204, 220, 221, 223
domain-neutral / domain-specific
14, 67-69, 73, 224
Dowty, D. R. 262
Dugas, M. 167, 170
Ebert, T. 179
Edelman, S. 81
EHR (electronic health record) 95,
105, 106, 113, 124, 119
EHR system 9, 105-107, 109, 124
empirical 10, 31, 32, 54, 56, 77, 87,
91, 96, 104, 160, 191, 198, 200,
201, 203, 204, 212, 215, 216,
288, 295-298
inquiry 79-81
object 49-50
empty / emptiness (with reference to
granular partition theory) 129,
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136, 137, 142, 145, 146, 148,
150-157
endurant (see continuant)
entity 14, 16, 25, 33, 39-45, 64, 66,
69, 75, 81, 93, 97, 106, 107, 112,
113, 122, 123, 127, 133, 148,
152, 162, 170, 181, 183, 185,
191, 203, 221, 226, 228, 229,
246, 279, 299
dependent, independent 246
environment 15, 24, 25, 27, 35, 149
epistemology / epistemological /
epistemic 19, 22, 42, 43, 54, 78,
79, 84, 242, 285, 291-293, 295,
302
Ereshefky, M. 207
evolution, theory of 31-34, 36, 197,
207, 209-211, 214-217
exemplification, exemplify (see
relation, exemplification)
exhaustiveness / exhaustive 17,
144-147, 149, 153, 160, 163, 167169, 175, 184, 208, 242
existence / exist 129, 154, 155, 165,
169, 171, 177, 181-185, 187, 191,
193, 196, 202-206, 213, 214, 221,
225, 228-230, 240, 243, 255, 256,
275, 280, 282, 283, 285, 293,
204, 297, 299, 307
expert system (see system, expert)
explicit / explicitness (of
classification system) 21, 24, 83,
161, 168
expression 21, 75, 78, 89, 94-97,
100, 106, 111, 162, 170, 177, 179,
185, 186, 189, 192, 193, 196,
219-228, 233-237, 247, 270-271,
277, 278, 297, 299
demonstrative 45, 47, 48, 55, 56
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Galton, A. 262-263
Grdenfors, P. 96
Gaus, W. 170
Gelman, S. A. 88
Gene Ontology (GO) 10, 22, 27,
29, 35, 36, 83, 221, 223, 250,
251, 254, 264, 296, 304, 305
general / generality / generalization
9, 10, 14, 15, 17, 27, 33, 34, 4147, 51-54, 60, 65-68, 73, 76, 8486, 91, 92, 96, 105, 106, 110-113,
126, 134, 168, 173, 185-187, 192,
193, 197, 202-204, 216, 235, 238,
240, 241, 256-258, 264, 271, 272,
278, 289, 292, 308
general term 27, 45, 76, 84, 92, 96,
106, 111, 113, 192, 219-224, 240
genetic / genetics / genetic research
/ gene 24, 26, 27, 31-36, 88, 94,
102, 120, 162, 167, 169, 209,
210, 212, 223, 224
Genesereth, M. 71-72
genus 18, 30, 31, 95, 149, 164, 198,
202-205, 215, 217, 235, 242-244,
247, 249, 250
genus-subsumption (see relation,
is_a)
geometry / geometrical 41, 44, 47,
201, 255, 294
Ghiselin, M. 34, 207-208
Gibson, J. J. 25
Gill, K. 263
Goclenius, R. 40-43
Goldman, A. I. 276
granular / granularity / level of
granularity / granular level 12,
24-26, 33, 138, 144, 158, 303
granular partition 13, 16, 125-127,
133, 134, 141, 143, 155-158
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inference / infer / rule of inference
59-63, 72, 83, 95, 106, 140, 144,
170, 178, 216, 234, 305, 308
inference engine 55, 62
informatics / information science
28, 83, 84, 98, 173, 196, 253
bioinformatics 15, 18, 19, 22, 26,
27, 34, 285, 287, 296
biomedical 28, 84, 285
information 7-27, 50, 51, 53, 63,
64, 69, 71, 83, 87, 95, 97, 102,
106, 107, 109, 113, 115, 116, 119,
120-123, 162, 164, 174, 199, 205,
221, 222, 229, 232, 235, 236,
245, 247, 254, 291, 300, 302,
303, 305, 309
information-gathering (see
knowledge acquisition)
inherence, inhere (see relation,
inherence)
inheritance, single / multiple 18,
165, 175, 236, 249-252
instance / instantiation / instantiate
17, 18, 30-34, 39, 41, 46, 69, 77,
86, 93, 104-107, 111-124, 128,
185, 192, 193, 200-202, 205, 206,
211, 213, 215, 217, 220-235, 238242, 246, 252, 253, 255, 256,
258, 260, 261-263, 266, 267-270,
272-282
instance vector 120-121
instance_of relation (see relation,
instantiation)
interoperable / interoperability 10,
15-17, 74, 78, 171, 221, 234
intuition 48-52
is_a (see relation, is_a)
ISO (International Organization for
Standardization) 71, 73, 84-87,
102, 113, 114
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knowledge engineer / knowledge
engineering 11, 16, 63-66, 69,
71, 73, 80, 81, 291
knowledge management 15, 16,
34, 61, 63, 205, 216
knowledge representation 14, 15,
57-59, 61, 63, 64, 69, 70, 72-81,
83, 92, 97, 105, 114, 170, 173,
179, 196, 199, 221, 223, 235
Kornet, D. 210
Kumar, A. 28, 36, 165
language
artificial, first-order, formal,
logical, symbolic 71, 109, 110,
117
natural 10, 63, 75, 76, 107, 235,
236
programming 18, 169, 235, 271
Leibniz, G. W. 25, 99, 180
Lenat, D. 62
Lewin, K. 34
Lewis, D. 23, 126, 130, 183, 184
life form (see form of life)
Lindstrm, P. 308
linguisticism / linguistic 63, 75, 78,
84, 86, 90, 189, 193, 195, 221,
235, 247, 270, 271, 300-302, 306
Linnaeus, C. 22, 23, 211
located_in relation / location
relation (see relation, location)
logic 23, 29, 30, 44, 61-63, 73, 74,
76, 94, 99, 109, 111, 113-115,
127, 169, 177, 201, 216, 223,
232, 279, 286, 288
concept logic 113, 114, 123
description logic (DL) 65, 114,
235, 236
first-order logic (FOL) 65, 109,
110, 111, 113, 127, 179, 186
Macdonald, C. 186
mapping / map 12, 49, 73, 89, 107,
117, 120, 123-126, 133-135, 137,
138, 141, 142, 145, 152, 171,
281-283
Mark, D. M. 132
Margolis, E. 98
mass term / mass noun 206
material content (see content,
material)
material ontology (see ontology,
material)
mathematical abstraction (see
abstraction, mathematical)
matter / material 23, 24, 27, 33, 4047, 68, 86, 133, 177, 203, 225,
235, 236, 293, 300-302
material ontology (see ontology,
material)
matter vs. form (see form)
Mayr, E. 207, 214
Mayden, R. L. 207
McAllister, J. 21
McCray, A. 29, 285
meaning (of concept) 11, 23, 71,
72, 55, 86, 88-90, 97, 113, 201,
285, 306
Meixner, U. 219
Mejino, J. 30
mention / use distinction (see
use/mention distinction)
Menzel, C. 70
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mereology / mereological 126, 130132, 137, 140-145, 149-156, 188,
191, 192, 228
mereological structure 138-140,
143-145, 151, 153, 157, 158
metaphysics / metaphysical 12, 2123, 40, 66, 69, 80, 178, 180, 181,
259, 280, 292
methodology / methodological 15,
21, 26, 35, 36, 57, 58, 63, 70, 72,
75, 79-81, 123, 171, 222, 223,
234, 292, 296
Michael, J. 30
Millikan, R. 23, 33, 210
model 10, 16, 30, 70-72, 76, 81, 93,
97, 103, 114, 125, 132, 305
modular / modularity 24, 30, 33
molecular function 36, 251, 296,
304
Mourelatos, A. 264
Myrdal, K. G. 285-287, 290, 293
Nagel, E. 286
Nagel, T. 308
name / proper name 45, 49, 106,
107, 111, 117, 118, 133, 134, 206,
210, 222, 258
Nardi, D. 114
natural language (see language,
natural)
NCI (National Cancer Institute),
NCI Thesaurus / NCIT 16, 159,
162-165, 167, 168, 170, 172
Niles, I. 192
Nilsson, L. 71-72
nominalism 240
Norvig, P. 69
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ontology
application ontology 171
applied ontology 15, 19-22, 27,
220
formal ontology 14, 15, 17, 22,
39-41, 43-48, 52-56, 67, 174,
196, 201, 281
material ontology 44, 46, 48
reference ontology 17, 171
upper-level / domain-independent
204
OpenCyc, OpenCyc Upper
Ontology 74, 173-175, 177, 196
organism 18, 22, 23, 25, 26, 31-36,
46, 47, 92, 95, 125, 183, 191,
221, 225, 252, 304
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Rea, M. C. 203
realism / realist 11, 13, 14, 16, 19,
57-58, 79, 80, 90-98, 101, 103107, 109, 111, 113-119, 123, 236,
238, 240, 244
epistemological realism 19, 289,
292-294, 302, 308
realist logic (see logic, realist)
realist fallibilism (see fallibilism,
realist)
realist orientation 15, 16
representationalism (see
representationalism, realist)
reality 12-19, 22-25, 28, 34, 36, 41,
48-57, 62, 66, 70-81, 87, 90-98,
101, 103-107, 109, 111, 113-120,
123-128, 133, 135-138, 142, 146,
157, 158, 163, 171, 173, 184,
186-188, 197, 201, 203, 206, 212,
219, 222, 223, 226, 232, 240,
277, 285, 290, 293, 294, 296,
298-300, 302, 306, 309
Rector, A. 94-96
redundant / redundancy / nonredundancy (criterion for
ontology building) 89, 104, 117,
144, 148, 149, 156, 204, 205
refer / reference 10, 18, 19, 27, 28,
32, 36, 43, 45, 48, 50, 51, 55, 56,
63, 75, 83, 87, 90-95, 97, 99, 100,
102-104, 106, 107, 111, 117, 120,
123, 124, 134, 165, 168, 179,
187, 189, 295, 212, 220, 221,
226, 238, 246, 259, 262, 263,
271, 274, 277-229, 282, 283, 288,
297-299, 305, 306, 308
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relativism 12, 77, 78
representation / conceptualization
12-14, 18, 30, 48-52, 58, 63, 64,
70-81, 83, 100, 117, 137-144,
171, 185, 226, 233, 282, 283,
286, 293, 205, 306, 307
context representation (a
desideratum of Ciminos) 89
representationalism, realist 70
reproduction / reproductive (in
context of biological
classification) 207, 209, 211,
213, 126
Reydon, T. A. 207
Ridder, L. 191
Rdl, S. 267
Rosse, C. 30
Russell, B. 161, 183, 186
Russell, S. 69
Ryle, G. 264
Schark, M. 204
Schmidt, K. 167, 170
Schuhmann, K. 154
science
computer science 61, 72, 235
information science 7, 8, 14, 21,
22, 27, 32, 53, 69, 71, 164, 174,
235, 247, 291, 303
natural science 19, 21, 25, 26,
34, 36, 39, 41, 43, 46, 54, 56, 60,
77, 79, 81, 91-93, 96, 97, 105,
107, 113, 117, 118, 123, 159, 160,
171-173, 207, 212, 219, 221, 222,
227, 229, 234, 238, 239, 243,
285-287, 289, 290, 292, 293, 295,
296, 299
Searle, J. 135, 242, 307
Sellars, W. F. 25-6
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biological species 33, 126, 142,
201, 204-216
specific judgment (see judgment,
specific)
specification 18, 71, 165, 210, 202,
235, 236, 246-252, 273, 280
state of affairs / states of affairs 48,
133, 173, 188, 189, 300, 306
Stekeler-Weithofer, P. 54
Stell, J. G. 134
Stoecker, R. 23
Stout, R. 264, 268
Strawson, P. F. 268
structure 4, 11, 13, 17, 24, 25, 27,
28, 30, 31, 33, 36, 41, 44, 52, 53,
58, 59, 63-70, 76, 88, 102, 103,
105, 115, 117, 124, 197-200, 204,
216, 217, 219, 221, 227, 230-232,
243, 245, 247, 250, 251, 258,
260, 262, 264, 266, 267, 269,
277, 282, 283, 301, 304
general / generic 257, 258, 260,
263
mereological (see mereology)
temporal / of occurrents 18, 255,
259-261, 264, 265, 267, 269, 274,
276
Surez, F. 40
subjectivism / subjective 45, 75, 77,
290
substance / substantial 31, 32, 35,
49, 67, 68, 95, 107, 133, 164,
178, 180, 189, 227, 228, 236,
249, 253
subsume, subsumption (see relation,
subsumption)
SUMO (Suggested Upper Merged
Ontology) 17, 74, 173, 174, 192
symbolic language (see language,
symbolic)
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time 9, 10, 18, 21, 32-34, 46-55,
69, 80, 92, 93, 96, 106, 107, 111,
116, 118, 120-122, 134, 157, 177,
179, 183-185, 190, 191, 195, 196,
204, 211, 215, 219, 221-231, 237,
238, 249, 255-273, 275-278, 280283
trait 9, 12-14, 32, 98, 160-166, 225
transcendental / transcendence 4143, 53, 55
transitivity / transitive 128-130,
228, 233, 236, 249
transnatural abstraction (see
abstraction, transnatural)
transparency / transparent 135, 136,
139, 149, 187, 300
tree 31, 40, 132, 133, 139-142, 157,
163-166, 198-200, 216, 235, 247,
277-278, 283
taxonomic 197, 199, 200, 215
evolutionary 214-217
Trettin, K. 186
true / truth 7, 8, 40, 42-45, 51-53,
55, 78, 90, 94, 104, 112, 121,
133, 135, 141, 158, 161, 199,
214, 223, 223, 229, 232, 245,
246, 259, 273, 287-302
truthlike / truthlikeness 289, 292299, 302, 308
type (see also category, class, kind,
species, universal) 18, 23, 27, 31,
33, 36, 41, 64, 67, 89, 91, 95, 97,
102, 105, 111, 113, 121, 160,
161-168, 170, 171, 215, 220-226,
229, 132, 233, 238, 255-270, 272280, 282
understand / understanding 7, 9, 1115, 21, 22, 27, 29, 31-36, 44, 4849, 51-53, 56-57, 59-61, 72, 75,
77, 79, 80, 83, 89-90, 94, 98, 100,
102, 111, 114-115, 171, 173, 187,
197, 202, 208, 215, 216, 219,
224-225, 228, 268, 277, 300
uniform / uniformity (of
classification system) 88, 92,
160, 167, 175, 183, 266
unit (in context of granular theory)
12, 25, 85, 87, 126-131, 134-138,
140, 156, 162, 281
universal (see also category, class,
kind, species, type) 62, 71, 91,
97, 101-102, 104-106, 109-110,
112-113, 117-121, 123, 144, 168,
177, 182, 185, 187-188, 192-193,
196, 210, 220, 222-223, 225-229,
232, 238, 240, 289, 299
use (noun and verb) 7-8, 14-15, 17,
19, 21, 35-36, 40, 42-45, 48, 50,
52, 53, 55-56, 58, 63, 65-66, 7071, 80, 84-85, 94, 97-99, 101103, 107, 109-110, 113, 116, 118,
128, 134, 142, 146, 160, 170-171,
178-179, 192, 198, 200, 204, 206,
212, 220-225, 227-228, 238, 240,
244, 248, 253, 255, 257, 262,
270, 272, 275, 285, 290, 294,
296, 300-301, 303-306
use / mention distinction 19, 36,
285, 300-301, 303-306
user interface 61
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Vendler, Z. 262-264
verbs 65, 236, 249
transitive / intransitive 249
veridical / veridicality 11-13, 16,
80
verisimilitude 292-295
Vizenor, L. 306
vocabulary / controlled vocabulary
(see terminology)
Von Wachter, D. 186
Williams, D. C. 186
Wilson, J. 34
Wolff, C. 40
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