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GASTROENTEROLOGY
jgh_6724
1290..1297
Key words
gas chromatography time-of-flight mass
spectrometry, gastric cancer, metabolic
phenotype.
Accepted for publication 16 March 2011.
Correspondence
Dr Ruihua Shi, Department of
Gastroenterology, the First Hospital Affiliated
to Nanjing Medical University, 300 Guangzhou
Road, Nanjing, 210029, China. Email:
ruihuashi@126.com
1
These authors contributed equally to this
work.
Abstract
Background and Aim: To study the low-molecular-weight metabolites in blood plasma of
patients with the progressive disease, gastric cancer, and to characterize different stages
from chronic superficial gastritis (CSG) to chronic atrophic gastritis (CAG), intestinal
metaplasia (IM), gastric dysplasia (DYS) and finally gastric cancer (GC).
Methods: We applied gas chromatography time-of-flight mass spectrometry (GC/TOFMS) to determine metabolites levels in plasma obtained from 80 patients including 19 with
CSG, 13 with CAG, 10 with IM, 15 with DYS and 22 with GC (nine preoperation and 13
postoperation). Principal component analysis (PCA) and statistics were used to differentiate the stages and to identify the markers of gastric cancer.
Results: Totally, 223 peaks were detected in GC/TOF-MS and 72 compounds were
authentically identified. CSG showed distinct difference from the other groups of CAG,
IM, DYS and GC, whose plots clustered closely. IM clustered closely to GC, suggesting
similar metabolic patterns of them. Fifteen identified metabolites contributed most to the
differentiating between CSG and GC, and characterized different stages of GC. Statistics
revealed elevated levels of 2-Hydroxybutyrate, pyroglutamate, glutamate, asparagine,
azelaic acid, ornithine, urate, 11-eicosenoic acid, 1-monohexadecanoylglycerol and
g-tocopherol, while downregulation of creatinine, threonate in GC group, indicating that
GC patients were obviously involved in oxidative stress, and perturbed metabolism of
amino acids and fatty acids.
Conclusion: The metabolic phenotype of CSG is significantly different from GC, while
that of IM is similar to it. The discriminatory metabolites characterizing progressive stages
from CSG to GC might be the potential markers to indicate a risk of GC.
Introduction
Although the morbidity and mortality has decreased significantly
in the past few decades, gastric cancer (GC), one of the most
common malignant tumors, remains the fourth most common
malignancy and occupies the second position in terms of the
number of mortalities caused by cancer.1 It was predicted that, in
2005, 0.3 million deaths and 0.4 million new cases from gastric
cancer would rank the third most common cancer in China.2
Exploring of the mechanism of GC and identifying the markers for
early diagnosis is of significant importance and has a great potential to reduce the morbidity and mortality of GC.
To date, little is known of the gastric carcinogenesis since the
development of GC is involved in multi-gene and multi-factor.
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Correa3 proposed a model of human intestinal-type gastric carcinogenesis from normal mucosa to chronic superficial gastritis
(CSG), to chronic atrophic gastritis (CAG), to intestinal metaplasia (IM), to dysplasia (DYS), and finally to intestinal-type
gastric cancer, which is widely accepted. Atrophic gastritis and
intestinal metaplasia are considered as important risk factors of
gastric carcinogenesis,4 and early intervention on gastric precancerous lesions and precancerous diseases may reduce the incidence of gastric cancer. Unfortunately, ultimate diagnosis of
CAG, IM and GC primarily relies on endoscopic examination
and pathological section, which is painful and harmful. Identification of biomarkers to indicate a risk of GC and establishment
of a sensitive, reliable routine examination method is greatly
desired.
L Yu et al.
Metabolomics is a novel technique that can quantitatively determine level change of small molecules in bio-samples resulting
from various pathologies, physiological changes and external
stimulation.58 Recently, metabolomics has been used to characterize the metabolic perturbation and identify potential biomarkers
in body fluids of various cancers.916 Denkert and colleagues9
profiled metabolic phenotype of colorectal cancer tissue and corresponding control by using gas chromatography time-of-flight
mass spectrometry (GC/TOF-MS), and revealed that intermediates
of citric acid cycle were downregulated and many amino acids
were upregulated in colorectal cancer tissue. Chan and colleagues10 compared the metabolic phenotype of biopsied colorectal cancer and their matched normal mucosae obtained from 31
colorectal cancer patients using high-resolution magic angle
spinning-nuclear magnetic resonance and gas chromatography
mass spectrometry (GC/MS), observed the elevated glycolysis,
nucleotide biosynthesis, lipid metabolism, inflammation and
steroid metabolism in malignant samples. Moreover, by applying
capillary electrophoresis time-of-flight mass spectrometry (CE/
TOFMS), Hirayama and colleagues11 determined extremely low
level of glucose, while highly elevated lactate, and glycolytic
intermediate, and most amino acids except glutamine, in both
colon and GC tissues. For identifying diagnostic markers of GC
and to explore the mechanism of the gastric carcinogenesis, in this
study, we investigated the dynamic changes of small molecule
metabolites in blood plasma of different stages in gastric carcinogenesis based on a well established metabolomic platform.1719
Methods
Patients and plasma samples
Table 1
All the authentic reference compounds used for compound identification were of analytical grade, purchased from Sigma-Aldrich
or Sigma (St Louis, MO, USA), Aldrich (Steinhein, Germany),
Merck (Darmstadt, Germany), or Serva (Heidelberg, Germany).
Methoxyamine hydrochloride and the stable-isotope-labeled internal standard compound [13C2-]-myristic acid were purchased from
Characteristic
Gender
Male
Female
Age(years)
Mean SD
Range
Drinking
Smoking
Taking medicine
H.pylori infection
CAG
IM
DYS
GC
GC_p
9
10
7
6
5
5
8
7
4
5
7
6
37 12.2
2060
+
42 14.1
2257
+
40 14.8
2155
+
38 16.3
2458
+
40 13.2
2255
+
43 13.0
2560
+
Not during the last 2 weeks. CAG, chronic atrophic gastritis; CSG, chronic superficial gastritis; DYS, gastric dysplasia; GC, gastric cancer; GC_p,
postoperative gastric cancer; IM, intestinal metaplasia.
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L Yu et al.
Here, principal components analysis (PCA) and partial leastsquares projection to latent structures and discriminant analysis
(PLS-DA) were used to analyze the acquired GC/TOF-MS data,
which is to calculate the models with established methodologies.20
For PCA modeling, samples were not classified; while for
PLSDA modeling, samples were divided into different groups
(e.g. each stage of disease) as the qualitative dummy variable, Y.
The calculated PCA or PLS-DA model represents a K-dimensional
space (where K stands for the number of variables), and then
projected and reduced to a few principal components (PCs) that
describe the maximum variation of different groups or samples.
Thus, the comparative analysis of the GC/TOF-MS data was facilitated by reducing the dimensionality of the dataset while retaining
as much information as possible. The results of PCA or PLS-DA
are displayed as score plots that represent the scatter of the
samples, showing the similarity or difference among the samples
or groups. Close clustering of the samples/groups indicates their
compositional similarity, whereas distant clustering of the
samples/groups suggests their diverse metabolomic compositions.
The purpose of PLS-DA was to calculate models of the different
groups, and to identify the response variables that contribute most
strongly to the model.
Cross-validation21 with seven cross-validation groups was used
throughout to determine the number of principal components, and
a permutation test was performed with an iteration of 100 to
validate the model. The goodness of fit for a model is evaluated
using three quantitative parameters; that is R2X is the explained
variation in X, R2Y is the explained variation in Y, and Q2Y is the
predicted variation in Y. Statistical analysis between groups
was validated for the biochemical parameters or metabolite
abundances using one-way anova, with a significance level of
0.05 or 0.01.
The compounds were identified by the comparison of the mass
spectra and retention indices of all the detected peaks with authentic reference standards available in the National Institute of Standards and Technology library 2.0 (2005) or an in-house mass
spectra library database maintained by Umea Plant Sciences
Center, Sweden.
Results
Metabolic phenotypes of CSG, CAG, IM, DYS
and GC
Gas chromatography time-of-flight mass spectrometry analysis of
blood plasma yielded the raw data contained in the total ion
current (TIC) chromatograms, Figure 1. Visual inspection of the
chromatogram revealed obviously different metabolic phenotypes
between GC and CSG. Altogether, 223 peaks were detected and 72
were authentically identified (supplementary information,
Table S1).
For overview of the metabolic phenotypes, a PLS-DA model
was calculated with the six groups, that is CSG, CAG, IM, DYS,
GC and postoperative GC. The PLS-DA scores plot showed that
the later five gathered closely, whereas CSG clustered far away
from other them, Figure 2a. According to cross-validation, this
model (of two principal components) explained 12.0%, predicted
10.4% of the variation in Y (sample types), and explained 17.2% of
the variation in X, GC/TOF-MS response variables (R2X = 0.172,
L Yu et al.
(a)
(b)
Figure 1 The typical total ion current (TIC) chromatograms of blood plasma from patients with gastric cancer (a) and chronic superficial gastritis (b).
Part of the peaks were identified as, 1. alanine; 2. 2-hydroxybutyrate; 3. valine; 4. urea; 5. glycine; 6. serine; 7. threonine; 8. aminomalonic acid;
9 pyroglutamate; 10. aspartate; 11. creatinine; 12. phenylalanine; 13. glutamine; 14. citrate; 15. glucose; 16.tyrosine; 17. palmitic acid; 18. urate;
19. oleic acid; 20. stearic acid; 21. cholesterol.
R2Y = 0.120, Q2Y = 0.104, respectively). The relatively low explanation (R2X = 0.172) of the GC/TOF-MS data suggests that most
of the detected variables were not significantly different among the
groups; while the relatively low explicative and predictive capacities of sample types (R2Y = 0.120, Q2Y = 0.104) primarily arose
from the considerable overlap of the groups (among CAG, IM,
DYS, GC and postoperative GC), which the model tried (but
failed) to differentiate. The results were also supported by the
significantly improving performance of another validated model
(R2X = 0.228, R2Y = 0.754, Q2Y = 0.575) when the samples were
divided into only two groups (1, CSG; 2, CAG, IM, DYS, GC and
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L Yu et al.
(a)
Figure 3. Moreover, after surgery operation, urate, 1monohexadecanoylglycerol, pyroglutamate, 11-eicosenoic acid,
glutamate, asparagine, 2-hydroxybutyrate, azelaic acid and threonate restored to more or less extent. The line evidence indicated
these compounds as the potential markers of GC.
Discussion
(b)
L Yu et al.
Table 2
Discriminatory metabolites in plasma of significant difference between chronic superficial gastritis and gastric cancer
Identified compounds
Creatinine
Threonate
Unknown compound 1
Unknown compound 2
Urate
Ornithine
1-Monohexadecanoyl-glycerol
Pyroglutamate
11-Eicosenoic acid
Glutamate
g-Tocopherol
Asparagine
2-Hydroxybutyrate
Azelaic acid
Mean (E+05)
SD (E+05)
Mean (E+05)
SD (E+05)
24.332
9.175
38.458
99.969
115.828
48.021
0.456
54.483
5.725
10.499
0.769
4.614
68.527
1.414
18.751
6.183
19.042
2.020
25.706
22.653
0.216
16.341
3.504
5.348
0.577
2.690
65.542
0.759
5.221
4.274
18.617
7.615
154.283
68.359
0.649
78.366
9.387
17.262
1.300
9.905
195.466
46.232
5.685
2.115
12.046
1.459
32.984
17.831
0.149
24.654
4.886
10.270
0.353
2.814
119.432
70.254
Ratio CSG/GC
P-value (E-02)
4.660
2.147
2.066
13.128
0.751
0.702
0.703
0.695
0.610
0.608
0.592
0.466
0.351
0.031
2.34
3.00
0.84
0.40
0.23
2.60
2.33
0.51
3.15
2.90
1.77
< 0.01
0.14
1.43
GC, gastric cancer; CSG, chronic superficial gastritis; SD, standard deviation.
Figure 3 Normalized peak areas of the discriminatory compounds in chronic superficial gastritis (CSG), chronic atrophic gastritis (CAG), intestinal
metaplasia (IM), dysplasia (DYS), gastric cancer (GC) and postoperative gastric cancer(GC-p).
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L Yu et al.
Conclusion
The plasma phenotype of CSG is significantly different from GC
and precancerous stages, while the metabolic phenotype of IM is
similar to GC. The discriminatory metabolites, such as azelaic acid,
glutamate, 2-Hydroxybutyrate, urate, creatinine and threonate characterized progressive stages from CSG to GC and might be the
potential markers to indicate a risk of GC. Additionally GC/
TOF-MS based metabonomics is a promising analytical platform to
characterize metabolic phenotype of GC and precancerous stages.
Acknowledgment
This work was supported by grants from Natural Science
Foundation of Jiangsu Educational Nature Science Foundation
(10KJB320007).
References
1 Parkin DM, Bray F, Ferlay J, Pisani P. Global cancer statistics,
2002. CA Cancer J. Clin. 2005; 55: 74108.
2 Yang L. Incidence and mortality of gastric cancer in China. World J.
Gastroenterol. 2006; 12: 1720.
3 Correa P. A human model of gastric carcinogenesis. Cancer Res.
1988; 48: 355460.
4 Sakaki N, Kozawa H, Egawa N, Tu Y, Sanaka M. Ten-year
prospective follow-up study on the relationship between
Helicobacter pylori infection and progression of atrophic gastritis,
particularly assessed by endoscopic findings. Aliment. Pharmacol.
Ther. 2002; 16 (Suppl. l2): 198203.
5 Nicholson JK, Lindon JC. Systems biology: metabonomics. Nature
2008; 455: 10546.
6 Holmes E, Wilson ID, Nicholson JK. Metabolic phenotyping in
health and disease. Cell 2008; 134: 7146.
7 Clayton TA, Lindon JC, Cloarec O et al. Pharmaco-metabonomic
phenotyping and personalized drug treatment. Nature 2006; 440:
10737.
8 Nicholson JK, Connelly J, Lindon JC, Holmes E. Metabolomics: a
platform for studying drug toxicity and gene function. Nat. Rev.
Drug Discov. 2002; 1: 15361.
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Supporting information
Additional Supporting Information may be found in the online
version of this article:
Table S1 The low-molecular-weight compounds identified in
blood plasma
Please note: Wiley-Blackwell are not responsible for the content or
functionality of any supporting materials supplied by the authors.
Any queries (other than missing material) should be directed to the
corresponding author for the article.
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