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Strategies in Synthetic Planning

Modern Stylistic Points in Retrosynthetic Analysis

Jen Alleva
MacMillan Group Meeting
January 8th 2014

Thursday, January 9, 14

Strategies in Synthetic Planning


Development and Conceptualization of Retrosynthetic Analysis

"By the end of this course I will be able to look at all of your retrosyntheses and know which one of you
produced it. You will all develop your own unique and recognizable style over the next few months."
Paul Reider, Graduate Synthesis

Common trend: Modern organic chemists have unique retrosynthetic strategies rendering their syntheses
easily recognizable to the well-read practitioner of organic chemistry

Thursday, January 9, 14

Strategies in Synthetic Planning


Development and Conceptualization of Retrosynthetic Analysis

"Retrosynthetic analysis is a problem-solving technique for transforming the structure of a synthetic


target (TGT) molecule to a sequence of progressively simpler structures along a pathway which
ultimately leads to simple or commercially available starting materials for chemical synthesis."

E. J. Corey, Harvard University


MIT 19451950, John Sheehan
Appointed as Instructor at UIUC at age 22
Earned professorship at UIUC at age 27
Moved to Harvard in 1959
Nobel Prize in Chemistry 1990
Detailed retrosynthetic analysis and techniques

Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 6.

Thursday, January 9, 14

Strategies in Synthetic Planning


Development and Conceptualization of Retrosynthetic Analysis

Target
Molecule

retron

keying elements

Int2

Int1

transform: Diels-Alder

SM1
Int4

Int3
SM2
Int5

Int6

SM3

SM4

Hoffmann, R. W. Elements of Synthetic Planning, Springer-Verlag, Berling Heidelberg, 2009, pp 35.


Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 6.
Thursday, January 9, 14

Strategies in Synthetic Planning


Development and Conceptualization of Retrosynthetic Analysis

OH
Me

Me
OH

Me

Me

retron

alkene keying element

Me

Me
O

Me

O
Br

Me

Cu
OR

Me

Me

Hoffmann, R. W. Elements of Synthetic Planning, Springer-Verlag, Berling Heidelberg, 2009, pp 35.


Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 6.
Thursday, January 9, 14

Strategies in Synthetic Planning


decreasing complexity
The main goal of retrosynthetic analysis is to reduce the complexity of the target: How?

Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 6.
Thursday, January 9, 14

Strategies in Synthetic Planning


decreasing complexity
The main goal of retrosynthetic analysis is to reduce the complexity of the target: How?
1. The application of powerful transforms:
forming key bonds in the molecular skeleton (i.e. CC bonds)
aldol, Diels-Alder, intramolecular alkylations, CH activation, cross couplings
forging stereocenters through substrate control (modernly reagent control)
cascade reactions

Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 6.
Thursday, January 9, 14

Strategies in Synthetic Planning


decreasing complexity
The main goal of retrosynthetic analysis is to reduce the complexity of the target: How?
1. The application of powerful transforms:
forming key bonds in the molecular skeleton (i.e. CC bonds)
aldol, Diels-Alder, intramolecular alkylations, CH activation, cross couplings
forging stereocenters through substrate control (modernly reagent control)
cascade reactions

Me
Me

Me
H

Me

Me

O
O

H
Me
Me

Me

Me

cyanthiwigin F
Enquist Jr., J. A.; Stoltz, B. M. Nature, 2008, 453, 1228.

Thursday, January 9, 14

Strategies in Synthetic Planning


decreasing complexity
The main goal of retrosynthetic analysis is to reduce the complexity of the target: How?
1. The application of powerful transforms:
forming key bonds in the molecular skeleton (i.e. CC bonds)
aldol, Diels-Alder, intramolecular alkylations, CH activation, cross couplings
forging stereocenters through substrate control (modernly reagent control)
cascade reactions
2. Lateral movement through a non-simplifying transform
skeletal rearrangements, transpositions, isomerization reactions, epimerizations

Thursday, January 9, 14

Strategies in Synthetic Planning


decreasing complexity
The main goal of retrosynthetic analysis is to reduce the complexity of the target: How?
1. The application of powerful transforms:
forming key bonds in the molecular skeleton (i.e. CC bonds)
aldol, Diels-Alder, intramolecular alkylations, CH activation, cross couplings
forging stereocenters through substrate control (modernly reagent control)
cascade reactions
2. Lateral movement through a non-simplifying transform
skeletal rearrangements, transpositions, isomerization reactions, epimerizations

O
O

Me
H

Me

N
H

Me

H
H O

Me

Me
H

N
H

Me

H
H O

Me
H

N
H

Me

H
H O

()-tuberostemonine

Wipf, P.; Rector, S. R.; Takahashi, H. J. Am. Chem. Soc., 2002, 124, 14848.
Thursday, January 9, 14

Strategies in Synthetic Planning


decreasing complexity
The main goal of retrosynthetic analysis is to reduce the complexity of the target: How?
1. The application of powerful transforms:
forming key bonds in the molecular skeleton (i.e. CC bonds)
aldol, Diels-Alder, intramolecular alkylations, CH activation, cross couplings
forging stereocenters through substrate control (modernly reagent control)
cascade reactions
2. Lateral movement through a non-simplifying transform
skeletal rearrangements, transpositions, isomerization reactions, epimerizations
3. Disconnections that actually increase molecular complexity
protecting groups, masking groups, activating/deactivating groups, adding functional groups or bonds

Thursday, January 9, 14

Strategies in Synthetic Planning


decreasing complexity
The main goal of retrosynthetic analysis is to reduce the complexity of the target: How?
1. The application of powerful transforms:
forming key bonds in the molecular skeleton (i.e. CC bonds)
aldol, Diels-Alder, intramolecular alkylations, CH activation, cross couplings
forging stereocenters through substrate control (modernly reagent control)
cascade reactions
2. Lateral movement through a non-simplifying transform
skeletal rearrangements, transpositions, isomerization reactions, epimerizations
3. Disconnections that actually increase molecular complexity
protecting groups, masking groups, activating/deactivating groups, adding functional groups or bonds

PMP

OH

AcO

SePh

PMP

O
O
Me

Me

Me

Me

Me

Me

Me
Me

Me

Me
Me

Me

guanacastepene E
Shipe, W. D.; Sorensen, E. J. J. Am. Chem. Soc., 2006, 128, 7025.
Thursday, January 9, 14

Strategies in Synthetic Planning


Classes of Retrosynthetic Disconnections

Transform-Based

Structure-Goal

Topological Strategies

look-ahead to powerfully simplifying

directed at the structure of a potential

strategic analysis of correlated

transform or tactic

intermediate or SM

bond disconnections

i.e. the "Key Step"

i.e. the branch point

i.e. rearrangements
and network analysis

Stereochemical Strategies

Functional Group-Based Strategies

retrosynthetic strategy which clears stereocenters

reduction in molecular complexity based on the

with either mechanism or substrate control

interchange, installation and removal of functional groups

most common in modern synthesis

"redox relay", directing groups, heterocycle formation

Thursday, January 9, 14

Strategies in Synthetic Planning


Acyclic Systems

What to disconnect and what to preserve

Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 38.
Thursday, January 9, 14

Strategies in Synthetic Planning


Acyclic Systems

What to disconnect and what to preserve

Disconnect

Preserve

to make symmetrical fragments

building block groups (alkyl, aryl)

CX bonds (Cheteroatom, esters, amides, etc)

remote stereocenters (more than 3C is remote)

either E or Z double bonds

skeletal bonds proximal to remote stereocenters

13 bonds away from functional groups


bonds that attach rings to chains (produce the largest fragment)

Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 38.
Thursday, January 9, 14

Strategies in Synthetic Planning


Acyclic Systems

What to disconnect and what to preserve

Disconnect

Preserve

to make symmetrical fragments

building block groups (alkyl, aryl)

CX bonds (Cheteroatom, esters, amides, etc)

remote stereocenters (more than 3C is remote)

either E or Z double bonds

skeletal bonds proximal to remote stereocenters

13 bonds away from functional groups


bonds that attach rings to chains (produce the largest fragment)
Wittig
HO

O
(CH2)3CO2H

TBSO
CHO
C5H11

C5H11

OH

OH

PGA2

SN2 cuprate addition


Corey, E. J.; Mann, J. J. Am. Chem. Soc. 1973, 95, 6832.
Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 38.

Thursday, January 9, 14

Strategies in Synthetic Planning


Ring-Bonds in Isolated Rings

What to disconnect and what to preserve

Disconnect
to make symmetrical fragments
CX bonds (Cheteroatom, esters, amides, etc)
easily formed rings (lactone, lactam, hemiacetal)

Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 38.
Thursday, January 9, 14

Strategies in Synthetic Planning


Ring-Bonds in Isolated Rings

What to disconnect and what to preserve

Disconnect
to make symmetrical fragments
CX bonds (Cheteroatom, esters, amides, etc)
easily formed rings (lactone, lactam, hemiacetal)
HO

O
H

HO

O
H

acylation/desulfurization

Me

iodolactonization

CH2I

Me

O
Me

PhO2S
Me

HS

Me
H

Me

(+)-dihydromevinolin
Falck, J. R.; Yang, Y.-L. Tetrahedron Lett. 1984, 25, 3563.
Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 38.
Thursday, January 9, 14

Strategies in Synthetic Planning


Disconnection of Fused Rings

What to disconnect and what to preserve

Disconnect

Preserve

[2+1] and [2+2] retrons

building block rings (aryl)

cocyclic bonds (cycloaddition retrons)

bonds that make >7 membered rings

heteratom containing rings (lactones, lactam, ketal)

skeletal bonds proximal to remote stereocenters

fused rings with exendo bonds (cation--cyclizations)

bonds that make stereocenters

Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 39.
Thursday, January 9, 14

Strategies in Synthetic Planning


Disconnection of Fused Rings

What to disconnect and what to preserve

Disconnect

Preserve

[2+1] and [2+2] retrons

building block rings (aryl)

cocyclic bonds (cycloaddition retrons)

bonds that make >7 membered rings

heteratom containing rings (lactones, lactam, ketal)

skeletal bonds proximal to remote stereocenters

fused rings with exendo bonds (cation--cyclizations)

bonds that make stereocenters

Me

Me

Me
H

Me

Me

O
O

oxidative
dimerization

O
O

O
O

O
O

OH

oxidative
dimerization

carpanone
Chapman, O. L.; Engel, M. R.; Springer, J. P.; Clardy, J. C. J. Am. Chem. Soc. 1971, 93, 6696.
Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 41.

Thursday, January 9, 14

Strategies in Synthetic Planning


Disconnection of Bridged Rings

What to disconnect and what to preserve

Disconnect

Preserve

exendo bonds in 47 membered rings

bridges that if disconnected yield >7 membered rings

Cheteratom bonds preferentially over CC bonds

bonds that would yield medium size rings

bonds that contain the most bridgehead atoms (network analysis)

bonds that yield pendant chains

Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 42.
Thursday, January 9, 14

Strategies in Synthetic Planning


Disconnection of Bridged Rings

What to disconnect and what to preserve

Disconnect

Preserve

exendo bonds in 47 membered rings

bridges that if disconnected yield >7 membered rings

Cheteratom bonds preferentially over CC bonds

bonds that would yield medium size rings

bonds that contain the most bridgehead atoms (network analysis)

bonds that yield pendant chains

Me

HO

Me

O
Me
Me

en route to longifolene

McMurry, J. E.; Isser, S. J. J. Am. Chem. Soc., 1972, 94, 7132.


Corey, E. J.; Cheng, X.-M. The Logic of Chemical Synthesis, John Wiley & Sons, New York, 1995, pp 42.
Thursday, January 9, 14

Applied Strategies in Retrosynthetic Analysis


Topological

Functional Group-Based
O
O

CO2Me
O
HO

OBn

HO

MeO2C

H
HO

Phragmalin-type Limonoids
Sarpong Group, Berkeley

Transform-Based
OH

Me

HO

OH

OH

Ouabagenin
Baran Group, Scripps

Structure-Goal
O

O
Me

HO

N
O

Thursday, January 9, 14

Me

()-Curvularin

()-Lycojapodine A

Stoltz Group, Caltech

Lei Group, Tianjin University

Applied Strategies in Retrosynthetic Analysis


Topological

Functional Group-Based
O
O

CO2Me
O
HO

OBn

HO

MeO2C

H
HO

Phragmalin-type Limonoids
Sarpong Group, Berkeley

Transform-Based
OH

Me

HO

OH

OH

Ouabagenin
Baran Group, Scripps

Structure-Goal
O

O
Me

HO

N
O

Thursday, January 9, 14

Me

()-Curvularin

()-Lycojapodine A

Stoltz Group, Caltech

Lei Group, Tianjin University

Synthesis of the Framework of Phragmalin-Type Limonoids


Utilizing Network Analysis: a topological strategy

potent anti-cancer, antibiotic, anti-inflammatory properties

H
AcO

O
O

CO2Me AcO

Me

AcO

Me

highly oxygenated triterpenoid


key challenge is synthesis of the carbocyclic core

Me
O

O
OH

Me

Xyloccensin O

octahydro-1H-2,4-methanoindene core

phragmalin-type limonoid

CO2Me

OTBS

6 steps

O
CO2Me
OBn
MeO2C

O
OBn

Lebold, T. M.; Gallego, G. M.; Marth, C. J.; Sarpong, R. Org. Lett., 2012, 8, 2110.

Thursday, January 9, 14

Synthesis of the Framework of Phragmalin-Type Limonoids


Utilizing Network Analysis: a topological strategy

Guiding Principles of Network Analysis

in general: it is easier to synthesis fused rings that bridged systems


identify the bonds that are made to the most bridged system
retrosynthetic removal of these bonds will lead to the most simple keying element

longifolene

Corey, E. J.; Ohno, M., Mitra, R. B.; Vatakancherry, P. A. J. Am. Chem. Soc. 1964, 86, 487.

Thursday, January 9, 14

Synthesis of the Framework of Phragmalin-Type Limonoids


Utilizing Network Analysis: a topological strategy

Guiding Principles of Network Analysis

in general: it is easier to synthesis fused rings that bridged systems


identify the bonds that are made to the most bridged system
retrosynthetic removal of these bonds will lead to the most simple keying element

most bridged
ring system

homodaphniphyllate framework

Heathcock, C. Angew. Chem. Int. Ed., 1992, 31, 665.

Thursday, January 9, 14

Synthesis of the Framework of Phragmalin-Type Limonoids


Retrosynthetic Analysis

intermolecular alkylation
O
O

CO2Me AcO

AcO

OBs
O

Me

AcO

Me

OBn
Me

MeO2C

O
OH

OBn
MeO2C

Me

Xyloccensin O
Diels-Alder

OTBS

OBs

OBs
O

OBn
H
OBn

MeO2C

CO2Me

O
CO2Me

O
OBn

more reactive
conformer

Thursday, January 9, 14

Synthesis of the Framework of Phragmalin-Type Limonoids


Diels-Alder Approach

OTBS

OTBS
H

PhMe, 100 C

OTBS
H

Pd/C, H2

CO2Me

(>10:1 endo:exo)

O
OBn

89%

EtOAc
O

OBn
CO2Me

OH
H

1M HCl

OBs
H

BsCl, pyr.

precursor to
intramolecular

cat. DMAP

MeOH
O

OBn
CO2Me

OBn
CO2Me

CH2Cl2

OBn
CO2Me

alkylation

82% over 3 steps

Lebold, T. M.; Gallego, G. M.; Marth, C. J.; Sarpong, R. Org. Lett., 2012, 8, 2110.

Thursday, January 9, 14

Synthesis of the Framework of Phragmalin-Type Limonoids


Intramolecular Alkylation

OBs
BnO2C

conditions

O
OBn

(below)
O

OBn
CO2Me

MeO2C

14

H
MeO2C

21

Lebold, T. M.; Gallego, G. M.; Marth, C. J.; Sarpong, R. Org. Lett., 2012, 8, 2110.

Thursday, January 9, 14

Synthesis of the Framework of Phragmalin-Type Limonoids


Intramolecular Alkylation

OBs
BnO2C

conditions

O
OBn

(below)
O

H
H

MeO2C

OBn
CO2Me

MeO2C

14

21

BnO2C

BnO

OBn

MeO2C

OBn

OBn

OBn
MeO2C

CO2Bn
MeO2C

H
MeO2C

Lebold, T. M.; Gallego, G. M.; Marth, C. J.; Sarpong, R. Org. Lett., 2012, 8, 2110.

Thursday, January 9, 14

Synthesis of the Framework of Phragmalin-Type Limonoids


Intramolecular Alkylation

CO2Me
OH
H

OBn
CO2Me

1. DMP, NaHCO3

CO2Me

CH2Cl2

KOtBu, THF

2. Ph3P=CHCO2Me

78 C - 0 C

CH2Cl2

49% over 2 steps

OBn
CO2Me

O
OBn
MeO2C

79%

Lebold, T. M.; Gallego, G. M.; Marth, C. J.; Sarpong, R. Org. Lett., 2012, 8, 2110.

Thursday, January 9, 14

Applied Strategies in Retrosynthetic Analysis


Topological

Functional Group-Based
O
O

CO2Me
O
HO

OBn

HO

MeO2C

H
HO

Phragmalin-type Limonoids
Sarpong Group, Berkeley

Transform-Based
OH

Me

HO

OH

OH

Ouabagenin
Baran Group, Scripps

Structure-Goal
O

O
Me

HO

N
O

Thursday, January 9, 14

Me

()-Curvularin

()-Lycojapodine A

Stoltz Group, Caltech

Lei Group, Tianjin University

Total Synthesis of Ouabagenin


a functional group-based approach

Key Features of a Functional Group-based Approach

functional group in the target directly keys a disconnection


functional group in the target is poised to assist in the installation of a key stereocenter
often times installed and later removed in order to enable a key transform (overbred intermediate)
may extend to modern photoredox radical chemistry, traceless directing groups, CH activation

nepatalactone

enamine-,-enal cycloaddition

Clark, K. J.; Fray, G. I.; Jaeger, R. H.; Robinson, R. Tetrahedron, 1959, 6, 217.

Thursday, January 9, 14

Total Synthesis of Ouabagenin


a functional group-based approach

Key Features of a Functional Group-based Approach

functional group in the target directly keys a disconnection


functional group in the target is poised to assist in the installation of a key stereocenter
often times installed and later removed in order to enable a key transform (overbred intermediate)
may extend to modern photoredox radical chemistry, traceless directing groups, CH activation

functional group installed to assist key step

accessing
(+)-Gliocladin C

functional group
removed by photochemical
reduction

Furst, L.; Narayanam, J. M. R.; Stephenson, C. R. J. Angew. Chem. Int. Ed. 2011, 50, 9655.

Thursday, January 9, 14

Total Synthesis of Ouabagenin


a functional group-based approach

Key Features of a Functional Group-based Approach

functional group in the target directly keys a disconnection


functional group in the target is poised to assist in the installation of a key stereocenter
often times installed and later removed in order to enable a key transform (overbred intermediate)
may extend to modern photoredox radical chemistry, traceless directing groups, CH activation

reserpine

LeBold, T. P.; Wood, J. L.; Deitch, J.; Lodewyk, M. W.; Tantillo, D. J.; Sarpong, R. Nat. Chem., 2012, 5, 126.

Thursday, January 9, 14

Total Synthesis of Ouabagenin


retrosynthetic analysis

Pd-catalyzed
coupling

reduction
epoxidation/
reductive opening

deprotection

HO

HO

Me
Me

HO

H
H

OH

OH

HO

HO

Me

H
O

OH

OH

oxidation

Et

chemo/regioselective
CC fragmentation

HO

Norrish type 2
Me

Me O

O
O
O

Me

HO

O
O

Me O

HO

H
H

HO

Me

Me

H
H

O
O

andrenosterone

LeBold, T. P.; Wood, J. L.; Deitch, J.; Lodewyk, M. W.; Tantillo, D. J.; Sarpong, R. Nat. Chem., 2012, 5, 126.

Thursday, January 9, 14

Total Synthesis of Ouabagenin


a functional group-based approach

Me O

O
Me
H

OH

HO

H
H

Me

HO

1. H+

2. h

O
O

H
H

Norrish Type 2
adrenosterone

55% over two steps

Renata, H.; Zhou, Q.; Baran, P. S. Science 2013, 339, 59.

Thursday, January 9, 14

Total Synthesis of Ouabagenin


a functional group-based approach

Me O

O
Me
H

OH

HO

2. h

Me

HO

1. H+

O
O

H
H

Norrish Type 2
55% over two steps

adrenosterone

Me O

O
Me

HO

H
H

Me O
H

H2C
H

Renata, H.; Zhou, Q.; Baran, P. S. Science 2013, 339, 59.

Thursday, January 9, 14

Total Synthesis of Ouabagenin


a functional group-based approach

O
Me
H

OH

HO

O
O

H
H

2. h

Me

HO

1. H+

Me O

NIS, Li2CO3

Norrish Type 2
55% over two steps

adrenosterone

Me

H
H

HO

TiCl4
AgOAc

Me

85%

H
H

HO

1. H2O2

Me

H
O

2. SeO2

71%

Renata, H.; Zhou, Q.; Baran, P. S. Science 2013, 339, 59.

Thursday, January 9, 14

Total Synthesis of Ouabagenin


a functional group-based approach

HO

Me

H
H

H2O2

O
O

H
H

H
O

HO

Me

50% over 3 steps

Renata, H.; Zhou, Q.; Baran, P. S. Science 2013, 339, 59.

Thursday, January 9, 14

Total Synthesis of Ouabagenin


a functional group-based approach

HO

Me

H
H

H2O2

O
O

H
H

H
O

HO

Me

50% over 3 steps

Al-Hg

HO

HO

Me

H
O

H2O

OH

56%

Renata, H.; Zhou, Q.; Baran, P. S. Science 2013, 339, 59.

Thursday, January 9, 14

Total Synthesis of Ouabagenin


a functional group-based approach

HO

Me

H
H

H2O2

HO

Me

H
H

H
O

Al-Hg

HO

Me
O

Me

OH

Me

1. Li, NH3

Et

63% over 2 steps

Me O

HO
H
H

2. LiBEt3H
O

Me
O

1. PPTS, Me2CO

56%

O
O

H
H

50% over 3 steps

Me

H2O

HO

Me

1. PPTS, Me2CO

Et

69% over 2 steps


Renata, H.; Zhou, Q.; Baran, P. S. Science 2013, 339, 59.

Thursday, January 9, 14

Total Synthesis of Ouabagenin


a functional group-based approach

Me
Me
O

HO

MeCN, then FeCl3

Me

H
H

Me

1. TMSOTf, NEt3, Pd(OAc)2

Me O

HO
H
H

2. SiO2, DIPEA
F

F3C

Me O

Et

Et
F

55% over 2 steps

O
O

Me

Co(acac)2 (20 mol%)

Me
O

Me O

HO

H
O

1. N2H4: I2, NEt3

OH

2. CuTC (3 equiv)
Pd(PPh3)4 (15 mol%)
DMF

Et

86%

Me

CH2Cl2/EtOH

O2, PhSiH3
dioxane

Me

Bu3Sn

Me

HO
H
H

O
O

OH

Et

42% over 2 steps

Renata, H.; Zhou, Q.; Baran, P. S. Science 2013, 339, 59.

Thursday, January 9, 14

Total Synthesis of Ouabagenin


a functional group-based approach

O
Me
Me
O

Me

HO
H
H

OH

Me

1. CoCl26H2O, NaBH4
EtOH, 0 C to rt.

B
Et

2. PhH, 100 C
Me2N

Me

NtBu
Me2N

Me

HO

H
O

B
Et

OH

70% over two steps

Renata, H.; Zhou, Q.; Baran, P. S. Science 2013, 339, 59.

Thursday, January 9, 14

Total Synthesis of Ouabagenin


a functional group-based approach

O
Me
Me
O

Me

HO
H
H

Me

1. CoCl26H2O, NaBH4
EtOH, 0 C to rt.

Me
O

2. PhH, 100 C

OH

Me2N
O

NtBu
Me2N

Et

Me

HO

B
Et

OH

70% over two steps

O
O

HCl (conc.)
MeOH, rt.

HO

HO

Me

HO

ouabagenin
H

90%

H
HO

20 steps from andrenosterone


OH

OH

Renata, H.; Zhou, Q.; Baran, P. S. Science 2013, 339, 59.

Thursday, January 9, 14

Applied Strategies in Retrosynthetic Analysis


Topological

Functional Group-Based
O
O

CO2Me
O
HO

OBn

HO

MeO2C

H
HO

Phragmalin-type Limonoids
Sarpong Group, Berkeley

Transform-Based
OH

Me

HO

OH

OH

Ouabagenin
Baran Group, Scripps

Structure-Goal
O

O
Me

HO

N
O

Thursday, January 9, 14

Me

()-Curvularin

()-Lycojapodine A

Stoltz Group, Caltech

Lei Group, Tianjin University

Total Synthesis of ()-Curvularin


A Transform-Based Approach

Key Features of a Transform-Based Approach

in general: the late-stage key-step


look-ahead to apply a highly simplifying synthetic strategy
often cascades, rearrangements, transformations which assemble multiple CC bonds

Estrone

Corey, E. J.; Ohno, M., Mitra, R. B.; Vatakancherry, P. A. J. Am. Chem. Soc. 1964, 86, 487.

Thursday, January 9, 14

Total Synthesis of ()-Curvularin


A Transform-Based Approach

Key Features of a Transform-Based Approach

in general: the late-stage key-step


look-ahead to apply a highly simplifying synthetic strategy
often cascades, rearrangements, transformations which assemble multiple CC bonds

Squalene

Werthermann, L.; Johnson, W. S.; Proc. Nat. Acad. Sci., 1970, 67, 1465.

Thursday, January 9, 14

Total Synthesis of ()-Curvularin


Retrosynthetic Analysis

benzyne acylalkylation

OH

OBn

Me

O
O

BnO

HO
O

Me

OR

RCM

Me
O

Me

O
Me

known acetate
Aldol

2 steps from commercial

Tadross, P. M.; Virgil, S. C.; Stoltz, B. M. Org. Lett., 2010, 7, 1612.

Thursday, January 9, 14

Total Synthesis of ()-Curvularin


preparation of the -ketolactone

1. Mg, THF, I2 (trace)


2. CuI

Me
Me

Me

Me

1.) LDA then acrolein

Br

3. Ac-Cl, pyr.

85%, >99% ee

Me

HMDS, THF 70 C;

THF, 78 C

HO

76%

(1:1)

Grubbs 3 (10 mol%)


PhH, reflux;
1 N HCl, THF

HO

Me

1. Pd/C, H2, EtOH

2. DMP, CH2Cl2

92% over 2 steps

57%

Lin, W.; Zercher, C. K.; J. Org. Chem., 2007, 72, 4390.


Tadross, P. M.; Virgil, S. C.; Stoltz, B. M. Org. Lett., 2010, 7, 1612.

Thursday, January 9, 14

Total Synthesis of ()-Curvularin


Key Step

OBn

OBn

Me

TMS

CsF

OTf

MeCN, 40 C

O
O

BnO

30%

BnO
O

Me

Tadross, P. M.; Virgil, S. C.; Stoltz, B. M. Org. Lett., 2010, 7, 1612.

Thursday, January 9, 14

Total Synthesis of ()-Curvularin


Key Step

OBn

OBn

Me

TMS

CsF

OTf

MeCN, 40 C

O
O

BnO

BnO
O

30%

OH

Me

Pd/C, H2
MeOH, THF
HO

60%
O

Me

()-Curvularin

Tadross, P. M.; Virgil, S. C.; Stoltz, B. M. Org. Lett., 2010, 7, 1612.

Thursday, January 9, 14

Applied Strategies in Retrosynthetic Analysis


Topological

Functional Group-Based
O
O

CO2Me
O
HO

OBn

HO

MeO2C

H
HO

Phragmalin-type Limonoids
Sarpong Group, Berkeley

Transform-Based
OH

Me

HO

OH

OH

Ouabagenin
Baran Group, Scripps

Structure-Goal
O

O
Me

HO

N
O

Thursday, January 9, 14

Me

()-Curvularin

()-Lycojapodine A

Stoltz Group, Caltech

Lei Group, Tianjin University

Total Synthesis of ()-Lycojapodine A


A Structure-Goal Approach

Key Features of a Structure-Goal Approach

Implemented when a large number of target structures are desired (collective synthesis)
bulk of synthetic strategy relies on the synthesis of a highly simplifying intermediate
allows the implementation of multiple retrosynthetic techniques

common intermediate
tetracycle

Jones, S. B.; Simmons, B.; Mastracchio, A.; MacMillan, D. W. C. Nature, 2011, 475, 183.

Thursday, January 9, 14

Total Synthesis of ()-Lycojapodine A


A Structure-Goal Approach

Key Features of a Structure-Goal Approach

Implemented when a large number of target structures are desired (collective synthesis)
bulk of synthetic strategy relies on the synthesis of a highly simplifying intermediate
allows the implementation of multiple retrosynthetic techniques

Cortisol

deoxycholic acid
targeted starting material

Fieser, L. F.; Fieser, M. Steroids Reinhold Publishing, New York, 1959. pp 645659.

Thursday, January 9, 14

Total Synthesis of ()-Lycojapodine A


A Structure-Goal Approach

Key Features of a Structure-Goal Approach

Implemented when a large number of target structures are desired (collective synthesis)
bulk of synthetic strategy relies on the synthesis of a highly simplifying intermediate
allows the implementation of multiple retrosynthetic techniques

Buspirone

targeted starting materials

Fieser, L. F.; Fieser, M. Steroids Reinhold Publishing, New York, 1959. pp 645659.

Thursday, January 9, 14

Total Synthesis of ()-Lycojapodine A


A Structure-Goal Approach

more than 250 Lycopodium alkaloids have been characterized

contains a unique 6/6/6/7 tetracyclic skeleton

Me
N

unprecedented carbinolamine lactone motif


biosynthesis suggests that many natural products can be
accessable through a common intermediate

()-Lycojapodine A
fawcettimine-type alkaloid

OH
H

Me
N

(+)-fawcettimine

O
H

Me
N

(+)-fawcettidine

O
H

Me
O

(+)-lycoflexine

Me
N

OH

OH

(+)-alopecuridine

Li, H.; Wang, X.; Hong, B.; Lei, X. J. Org. Chem., 2013, 78, 800.

Thursday, January 9, 14

Total Synthesis of ()-Lycojapodine A


simplified biogenesis

Me

carbon
O

skeleton

HO
N
H

lycolidine
biosynthetic common
intermediate

Thursday, January 9, 14

rearrangement

OH
H

Me
N

(+)-fawcettimine

Total Synthesis of ()-Lycojapodine A


simplified biogenesis

Me

carbon
O

skeleton

HO
N
H

lycolidine
biosynthetic common
intermediate

Thursday, January 9, 14

rearrangement

OH
H

Me
N

(+)-fawcettimine

HCHO

condensation

Me
O

Total Synthesis of ()-Lycojapodine A


simplified biogenesis

Me

carbon
O

skeleton

HO
N
H

lycolidine

rearrangement

OH
H

Me
N

HCHO

Me
O

condensation

(+)-fawcettimine

biosynthetic common
intermediate
O
H

Me
O

(+)-lycoflexine

Thursday, January 9, 14

Total Synthesis of ()-Lycojapodine A


simplified biogenesis

Me

carbon
O

skeleton

HO

lycolidine

Me

N
H

OH

rearrangement

HCHO

Me
O

condensation

(+)-fawcettimine

biosynthetic common

H2O

intermediate
O

O
H

Me
N

(+)-fawcettidine

Thursday, January 9, 14

Me
O

(+)-lycoflexine

Total Synthesis of ()-Lycojapodine A


simplified biogenesis

OH
H

Me

OH

(+)-alopecuridine

[O]
Me

carbon
O

skeleton

HO

lycolidine

Me

N
H

OH

rearrangement

HCHO

Me
O

condensation

(+)-fawcettimine

biosynthetic common

H2O

intermediate
O

O
H

Me
N

(+)-fawcettidine

Thursday, January 9, 14

Me
O

(+)-lycoflexine

Total Synthesis of ()-Lycojapodine A


simplified biogenesis
O
O

OH
H

Me

OH

[O]
Me

H2O
(+)-alopecuridine

()-lycojapodine A

[O]
Me

carbon
O

skeleton

HO

lycolidine

Me

N
H

OH

rearrangement

HCHO

Me
O

condensation

(+)-fawcettimine

biosynthetic common

H2O

intermediate
O

O
H

Me
N

(+)-fawcettidine

Thursday, January 9, 14

Me
O

(+)-lycoflexine

Total Synthesis of ()-Lycojapodine A


retrosynthetic analysis

OH
H

Me

(+)-fawcettimine
H

Me
O

Boc

Me
N

proposed common
intermediate

()-Lycojapodine A
O
H

Me
O

(+)-lycoflexine

Thursday, January 9, 14

Total Synthesis of ()-Lycojapodine A


retrosynthetic analysis

OH
H

Me

tandem conjugate addition/


Aldol

intramolecular
alkylation
(+)-fawcettimine
H

Me
O

Boc

O
O

Boc
N

OTBDPS

N
Me

Me
N

OH

proposed common
intermediate

()-Lycojapodine A
O

O
H

Me
O

N
O

Me
MgBr

(+)-lycoflexine

Thursday, January 9, 14

Boc

OTBDPS

Total Synthesis of ()-Lycojapodine A


preparing the common intermediate

MgBr
O

CuBr, Me2S, LiCl, THF 78 C


then:

Me

OTBDPS

Boc
N

94%

NEt3HF

OTBDPS

MeCN, rt

75%

OH

1. collidine, MsCl
CH2Cl2, 4 C
2. DMP, CH2Cl2

Me

Thursday, January 9, 14

Boc

OH

Boc

OH

Me

Boc
N

Me

80% over 2 steps

OMs

Total Synthesis of ()-Lycojapodine A


preparing the common intermediate

Boc

NaI

Boc

OMs

acetone, rt.
Me

Me

84%

Boc
N

DBU
MeCN, rt.

Me

O
Me
Boc

Me

O
H

O
RBocN

65%

Thursday, January 9, 14

Total Synthesis of ()-Lycojapodine A


synthesis of (+)-alopecuridine

CHO

1. NaBH4, MeOH, rt.


H

O
Me
Boc

OsO4, NaIO4
TMSO

2. TMSOTf, 2,6-lutidine

Me

CH2Cl2, 78 C

Boc

TMSO
Me

DABCO
Boc

dioxane/H2O

87%

SmI2 (5 equiv)

OH

TMSO
H

Me

HMPA (20 equiv)


THF, 78 C to rt.

Boc

Thursday, January 9, 14

1. TBAF, THF, rt

Me

OH

2. TPAP, NMOH2O

96%

Boc

4 MS, CH2Cl2, rt

80%

50%

OH

Total Synthesis of ()-Lycojapodine A


synthesis of (+)-alopecuridine and ()-lycojapodine A

HO
O

O
H

Me
Boc

OH

TFA, CHCl3
then NaHCO3

94%

Me
TFA

OH

(+)-alopecuridineTFA
12 steps

Li, H.; Wang, X.; Hong, B.; Lei, X. J. Org. Chem., 2013, 78, 800.

Thursday, January 9, 14

Total Synthesis of ()-Lycojapodine A


synthesis of (+)-alopecuridine and ()-lycojapodine A

HO
O

O
H

Me
Boc

OH

TFA, CHCl3

TFA

then NaHCO3

94%

Me

OH

(+)-alopecuridineTFA
12 steps

O
O

HO
H

Me
TFA

DMP, TFA

OH

4 MS, 30 C, 4 h

80%

Me
N

()-Lycojapodine A
13 steps

Li, H.; Wang, X.; Hong, B.; Lei, X. J. Org. Chem., 2013, 78, 800.

Thursday, January 9, 14

Applied Strategies in Retrosynthetic Analysis


Topological

Functional Group-Based
O
O

CO2Me
O
HO

OBn

HO

MeO2C

H
HO

Phragmalin-type Limonoids
Sarpong Group, Berkeley

Transform-Based
OH

Me

HO

OH

OH

Ouabagenin
Baran Group, Scripps

Structure-Goal
O

O
Me

HO

N
O

Thursday, January 9, 14

Me

()-Curvularin

()-Lycojapodine A

Stoltz Group, Caltech

Lei Group, Tianjin University

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