Académique Documents
Professionnel Documents
Culture Documents
Adapted from the work by Nam Sun Wang, Department of Chemical Engineering, University of Maryland
College Park, MD 20742-2111
Enzyme Kinetics
Page 2 of 10
1. Objective
The purpose of this experiment is to determine the kinetic parameters for invertase
hydrolysis of sucrose and the effects of enzyme concentration using the initial rate
method.
2. Problem Statement
You will develop the procedures as well as conduct the necessary experiments to
obtain the following.
(a) A calibration curve for absorbance versus sucrose concentration.
explain the linearity (or non-linearity) of the curve.
Discuss and
(b) A plot of the initial rate of reaction (-rs) vs. substrate concentration (S). In this plot,
make sure you show the experimental data points and a model curve representing the
Michaelis-Menten equation drawn with your experimentally determined Vmax and KM
values. Your discussion should address any discrepancies in the data or poor matching
of your model curve with the data points.
(c) A plot of Vmax versus enzyme concentration.
concentration on maximum rate.
glucose + fructose
(1)
The official name for invertase is -fructofuranosidase (EC 3.2.1.26). Note that sucrose
can be hydrolyzed relatively easily. The reaction can proceed even without the
presence of invertase, when sucrose is in an acidic environment.
Enzyme Kinetics
Page 3 of 10
Invertase is mainly used in the food industry, where fructose is preferred over sucrose
because it is sweeter and does not crystallize as easily. However, the use of invertase
is rather limited because another enzyme, glucose isomerase, can be used to convert
glucose to fructose more inexpensively. For health and taste reasons, its use in food
industry requires that invertase be highly purified.
A wide range of microorganisms produce invertase and can, thus, utilize sucrose as a
nutrient.
Commercially, invertase is biosynthesized chiefly by yeast strains of
Saccharomyces cerevisiae or Saccharomyces carlsbergensis. Even within the same
yeast culture, invertase exists in more than one form. For example, the intracellular
invertase has a molecular weight of 135,000 Daltons, whereas the extracellular variety
has a molecular weight of 270,000 Daltons.
In contrast to most other enzymes, invertase exhibits relatively high activity over a
broad range of pH (3.5 - 5.5), with the optimum near pH = 4.5. The enzyme activity
reaches a maximum at about 55 C.
The reaction of the enzyme (E) and sucrose (S) can be broken into three individual
reactions as follows:
E
k1
ES
ES
k2
ES
E
(2)
However, determining the reaction rate constant (k) for each of these reactions is
dependent upon the concentration of the enzyme-substrate complex (ES).
Unfortunately, we cannot measure the concentration of this enzyme-substrate complex
in any meaningful way, and thus, we cannot solve for k1, k-1 and k2.
However, if the reaction rate constants are replaced by KM and Vmax and either rapid
equilibrium or pseudo-steady equilibrium is assumed, then one can derive the
Michaelis-Menten equation:
rs
VMAX S
KM S
(3)
which is dependent only on the rate of disappearance of the substrate (-rs), and the
substrate concentration (S).
Rearrangement of the Eq. (3) into the form y = m.x + b is straight forward, and is seen
in the Lineweaver-Burk, Eadie-Hofstee and Hanes-Woolf plots. Since the initial rate
method assumes that at a short time interval, say 5 minutes, at the beginning of the
reaction, the reaction rate does not substantially change, then:
Enzyme Kinetics
rs
dS
dt
Page 4 of 10
reduces to
rs
S
t
(4)
where we know the initial substrate concentration (S), the time interval, and we can
obtain the final inverted substrate concentration through the calibration curve ( S).
From this methodology the values for KM and Vmax may be obtained, thus allowing the
quantification of the enzyme effectiveness. From the definition of KM, we have that the
lower the KM, the better the enzyme at binding to the substrate. From the definition of
Vmax, it is noted that the higher the Vmax, the faster the enzyme-substrate complex goes
to product. Therefore, a low KM and a high Vmax are desired in a good enzyme for a
specific substrate.
4. Materials
4.1 Equipment
Test tubes
Thermometers
Balance
Beakers
Pipettes
Pipettes are available in wide range of sizes. Graduations should be checked to
determine the volume capacity of a give pipette. It is also necessary to determine if
the graduations use the tip of the pipette or not in order to get accurate
measurements.
Hot plates
Spectrophotometer
1) 3,5-dinitrosalicylic acid
2) NaOH
3) Distilled water (DI-water)
4) Rochelle salts (Sodium potassium tartrate tetrahydrated)
5) Phenol (melt at 50 C)
6) Sodium metabisulfite
7) Phenolphthalein solution
8) 0.1N HCl solution
Enzyme Kinetics
Page 5 of 10
Preparation:
1) Dissolve 10.6g of 3,5-dinitrosalicylic acid and 19.8g of NaOH into 1416mL of DIwater in a stirred beaker. Add 306g of Rochelle salts, 7.6mL (8.132g) of phenol
and 8.3g of sodium metabisulfite;
2) Titrate a 3mL sample of the previous solution with phenolphthalein and 0.1N HCl
solution. It should take 5-6 mL of 0.1N HCl solution. Add NaOH into the preceding
DNS solution if required: 2g of NaOH for each additional 1mL of 0.1N HCl
solution required beyond 6mL.
Phosphate Buffered Saline (PBS) solution
Materials:
Preparation:
1) Mix 0.1 g dried invertase with 100mL of 0.05 M PBS solution (pH 7). Mix well.
This should provide enough stock solution for all groups. Keep refrigerated.
Note: Invertase must be stored in the refrigerator.
4.3 Reagents (used by the students)
DNS reagent for the analysis of reducing sugars
PBS solution
Concentrated HCl (37.3% , 11.9M)
5M KOH solution
1 g/L standard (+) Sucrose solution
Sucrose solutions: 50, 150 and 200 g/L
0.03 g/L invertase solution
Enzyme Kinetics
Page 6 of 10
5. Experimental Procedure
5.1. Sucrose Assay by the Dinitrosalicylic (DNS) Colorimetric Method
Unlike other carbohydrates, sucrose is the only non-reducing common disaccharide.
Consequently, most tests for sugar detection utilizing such reagents as Benedict's
solution, Fehling's solution and DNS (3,5-dinitrosalicylic acid) solution result in negative
readings for sucrose. However, these methods can still be applied if sucrose is first
hydrolyzed in an acid solution to yield glucose and fructose. This method is a
straightforward modification of the original DNS method for glucose analysis. When
sucrose is hydrolyzed in an acid solution or by the action of the enzyme invertase, it
yields equimolar amounts of D(+)-glucose and D(-)-fructose. The reducing sugars
glucose and fructose both react with the DNS reagent, whereas sucrose does not.
5.2. Procedure Concerning the use of DNS
The reducing agent, DNS, when reacted, will go through a color change, from a light
orange/yellow to a nearly opaque blackish brown. The amount of color change will be
determined using a spectrophotometer, which will read the absorbance of light passed
through the sample at a wavelength of 550 nm. These absorbance readings will range
in intensity. However, these absorbance readings are meaningless unless they can be
calibrated to the amount of sucrose reacted. Therefore, in the first part of this lab, the
goal is to generate a calibration curve, which relates absorbance to g/L of sucrose.
Accuracy is of key importance because any error in the calibration curve will be
propagated throughout the experiment. For this reason, at least two separate 1 g/L
standard solutions will be required for reproducibility. The concentrated HCl is
assumed to hydrolyze all the sugar present. While the KOH would be used to stop the
reaction (the reaction should be completed by 5 minutes, so the base is just used to
return the pH to normal), the DNS is still required as a color change agent. In later
steps, the DNS will be used for both color change and to stop the reaction.
Calibration Curve:
1) Prepare at least 2 standard sucrose solutions (1.0 g/L). Dilute each standard to
make 0.0, 0.2, 0.4, 0.6, 0.8, and 0.9 g/L* solutions. Use DI-water for the dilutions;
2) Place 1 ml of each sample into test tubes;
3) Inside of the hood, add 1 drop (20 l), of concentrated HCl solution to each sucrose
solution;
4) Place test tube in an agitated water bath at 55 C for 5 minutes;
5) Remove test tubes from the agitated water bath and add 3 drops (0.05 ml), of 5 M
KOH solution to neutralize the acid;
6) Add 3 ml of DNS reagent to each test tube and mix. Place in the agitated water
bath for more than 5 minutes, and then, cool to room temperature;
7) Read absorbance at 550 nm;
8) Generate a calibration curve to correlate the absorbance to the amount of sucrose
hydrolyzed.
Enzyme Kinetics
Page 7 of 10
* 50 g/L sucrose solution means that for every liter of water, 50g of sucrose would be
added, as opposed to placing 50g of sucrose in a volumetric flask and adding enough
water to reach the 1 liter mark.
5.3. Enzyme Kinetics of Invertase via Initial Rate Determination
In this experiment, the kinetics of invertase is investigated with the method of initial
reaction rates. In this method, the reaction rate can be easily correlated to the
conditions existing at the beginning of the reaction, since one has great control over the
initial condition. The enzyme-substrate mixture is allowed to react for a specified
amount of time. The rate of reaction can be monitored by measuring the amount of
reaction products, i.e., an equimolar mixture of glucose and fructose. The amount of
reducing sugars produced is determined colorimetrically with DNS.
You are required to do experimental procedures Part A and Part B, and perform a
Michaelis-Menten analysis of the data.
Part A Effect of Substrate Concentration:
In Part A, the enzyme invertase will be used to react with sucrose instead of HCl as was
done in the development of the calibration curve. As seen in Table 1, different sucrose
concentrations will be used, while the enzyme concentration remains the same. It is
important to note that the column marked as Initial Sucrose Concentration is the
concentration in the tube at reaction time = 0, just after the addition of the invertase,
while the absorbance measurement will give the final inverted sucrose concentration at
reaction time = 10 min.
It is also important to note that between tube G and tube H, the 50 g/L sucrose
solution changes to a 200 g/L sucrose solution, to achieve an Initial Sucrose
Concentration higher than 25 g/L. Each tube, A-N, will begin reacting with the addition
of 3mL of invertase solution and will stop reacting with the addition of the 3mL of DNS.
Each tube must react for exactly 10 minutes with the enzyme and 5 minutes with the
DNS. It is up to the students to develop the best scheme to allow this to occur. It is
also important to shake each tube well after addition of the invertase and DNS, to
ensure that both reactions are well mixed. During the first few minutes of color
development, students should check for banding of DNS. Banding will appear as
color development at the top of the tube, with no color development on the lower
portion of the tube. If this is caught early enough, a quick shake can ensure
appropriate mixing. If this is not caught until after the color development has taken
place, mixing will only dilute the color and result in an inaccurate reading.
1) Prepare a working enzyme solution (0.03 g/L) by diluting the 1 g/L stock solution
with 0.05 M PBS solution at pH 7**;
2) Prepare a set of sucrose solutions (in DI-water) at various concentrations. The
mixtures indicated in Table 1 are suggested;
3) Note starting time and add 0.03 g/l invertase solution to each test tube. See Table 1
for the required amounts for adding;
Enzyme Kinetics
Page 8 of 10
Initial Sucrose
Concentration
(g/L)
0.00
4.17
8.30
12.50
16.67
20.83
25.00
10.00
16.70
33.30
50.00
66.70
83.30
100.00
Absorbance
(a.u.)
Enzyme Kinetics
Page 9 of 10
Enzyme Kinetics
Page 10 of 10
0.03 g/L
Invertase
solution (mL)
0.0
0.1
0.5
1.0
1.5
2.0
2.5
3.0
3.0
3.0
PBS
solution
(mL)
3.0
2.9
2.5
2.0
1.5
1.0
0.5
0.0
3.0
0.0
150 g/L
Sucrose
solution (mL)
3.0
3.0
3.0
3.0
3.0
3.0
3.0
3.0
0.0
3.0
Initial Invertase
Concentration
(g/L)
0.0000
0.0005
0.0025
0.0050
0.0075
0.0100
0.0125
0.0150
0.0150
0.0150
Absorbance
(a.u.)