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Chem 331

Organic Chemistry

Iowa State University

Chap. 12 Structure Determination: MS and IR


12.1-11.2 Mass Spectrometry
a) Basics

b) Mass spectrum

c) High-Resolution MS

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

12.2-12.4 Fragmentation patterns (skipped)


12.5 Spectroscopy
a) Definition: the study of interactions between electromagnetic radiation and
molecules.

b) Principles

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

12.6-12.7 IR Spectroscopy
a) Position of absorption

b) Intensity

c) Four regions

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

12.8 IR spectra of some common functional groups


a) Hydrocarbons
Backbone of most organic compounds, only C-H and C-C
C-H
C-C
-1
Alkane (C-C)
28502960 cm
(8001300 cm-1)
Alkene (C=C)
30203100 cm-1
16401680 cm-1
Alkyne (CC-H)
3300 cm-1
21002260 cm-1
Internal CC
none
weak or none

b) Oxygen-containing compounds

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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40

Chem 331

Organic Chemistry

Iowa State University

Chap. 13 Structure Determination: NMR


13.1-13.3 NMR spectroscopy
a) Basics:

b) Chemical shift

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

c) Timescale

d) Operational issues

13.4-13.7 13C NMR


a) Position of absorption

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

b) Intensities of the signals

c) DEPT

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

d) Applications

13.8-13.10 1H NMR
a) Position of absorption

b) Equivalence test: replacement of two Hs with X, respectively

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

c) Chemical Shifts

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

c) Intensities

2
PPM

C5H12O (1:3)

2
PPM

4
PPM

C8H10 (2:3)

C6H12O (1:3)

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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2
PPM

C6H12O (1:1)

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Chem 331

Organic Chemistry

Iowa State University

13.11-13.12 Spin-spin splitting (Multiplicity)

# of Hs on adjacent C
0
1
2
3
4
5
6

# of peaks in multiplet
1 (singlet)
2 (doublet)
3 (triplet)
4 (quartet)
5 (quintet)
6 (sextet)
7 (septet)

Area ratio
1
1 1
1 2 1
1 3 3 1
1 4 6 4 1
1 5 10 10 5 1
1 6 15 20 15 6 1

Give examples of OCH3, OCH2CH3, OCH(CH3)2, and OC(CH3)3

2
PPM

2
PPM

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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2
PPM

PPM

47

Chem 331

Organic Chemistry

Iowa State University

13.11-13.12 Solving structures using 1H NMR

PPM

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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2
PPM

48

Chem 331

Organic Chemistry

2
PPM

2
PPM

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


Yan Zhao

Iowa State University

PPM

PPM

49

Chem 331

Organic Chemistry

Iowa State University

Chap. 6 An Overview of Organic Reactions


6.1 Four basic types of Organic Reactions

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

6.2-6.3 Radical Mechanisms


a) Mechanism

Half-headed curved arrows (fishhook) show movement of ONE electron


(radical reactions)
Full-headed curved arrows show movement of ONE PAIR of electrons (polar
reactions)
b) Radical reactions

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


Yan Zhao

51

Chem 331

Organic Chemistry

Iowa State University

6.4-6.6 Polar Mechanisms


a) Polarity vs Polarizability

b) Polar reactions (remember to follow the flow of electrons)


(The 3rd most important concept in organic chemistry)
E+ or E+ = electrophile or electron sink (Lewis acid), loves electrons (must
have empty orbitals for electrons)

Nu- or Nu = nucleophile or electron source (Lewis base), loves nucleus


(positive charge), rich in electrons

Electrons always go from Nu (electron source) to E (electron sink)

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

6.7-6.10 Thermodynamic and Kinetics

a) Thermodynamics

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

b) Calculation of H using Bond dissociation energy (BDE)

CH3H 438 kJ/mol


ClCl 243 kJ/mol
BrBr 193 kJ/mol
II 151 kJ/mol
c) Reaction rate theory

HCl 432 kJ/mol


HBr 366 kJ/mol
HI 298 kJ/mol

CH3Cl 351 kJ/mol


CH3Br 293 kJ/mol
CH3I 234 kJ/mol

d) Reaction energy diagrams

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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54

Chem 331

Organic Chemistry

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


Yan Zhao

Iowa State University

55

Chem 331

Organic Chemistry

Iowa State University

Chap. 7 Alkenes: Structure and Reactivity


7.1-7.2 Unsaturated compounds
Alkene (sp2)
Alkyne (sp)
Alkane (sp3)

Degree of unsaturation: CaHbOcNdXe

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

7.3-7.5 Nomenclature
a) Rules for alkenes
Longest chain containing C=C
Number the chain to give lowest number to C=C
Number and name other substituents
Assign (E) or (Z) prefix as needed
E = entgegen = opposite
Z = zusammen = together = ze zame side the same side
Priority: higher atomic number (if tie, count next atom)
If double (or triple) bond, count twice (or three times)

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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57

Chem 331

Organic Chemistry

Iowa State University

7.6 Stability of alkenes


a) Equilibrium

b) Heat of hydrogenation

c) General trend

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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58

Chem 331

Organic Chemistry

Iowa State University

7.7-6.10 Electrophilic Addition of HX


a) Electrophilic addition reaction

b) Markovnikovs rule

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

c) Carbocations (planar, sp2 hybridization)

7.10 Hammond Postulate

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

7.11 Carbocation Rearrangement

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

Chap. 8 Alkenes: Reactions and Synthesis


8.1 Addition/Elimination
a) Dehydrohalogenation (-HX): Remove H and X on adjacent carbons only

b) Dehydration of alcohols (-H2O): Remove H and OH on adjacent carbons only

8.2-8.4 Addition reactions


a) General

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

b) Addition of halogens

c) Halohydrin formation

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

d) Addition of water

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

8.5-8.6 More Addition reactions


a) Hydroboration

b) Reduction/hydrogenation

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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65

Chem 331

Organic Chemistry

Iowa State University

8.7-8.8 Oxidation
a) Epoxide

b) OsO4 (osmium tetroxide)

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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Chem 331

Organic Chemistry

Iowa State University

c) Ozonolysis

8.9 Addition of carbenes

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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67

Chem 331

Organic Chemistry

Iowa State University

8.10 Brief introduction of polymer

8.12-8.13 Stereochemistry of reactions

Notes for Organic Chemistry, John McMurry, 8th Ed., 2015


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