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Brigham and Womens Hospital, Harvard Medical School, Cambridge, Massachusetts; 2Massachusetts Institute of Technology, Cambridge;
Massachusetts General Hospital, Boston; 4Ragon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts; 5Rush University Medical Center,
Chicago, Illinois; and 6Harvard School of Public Health, Boston, Massachusetts
Background. Human immunodeciency virus (HIV)-1 elite controllers (ECs) represent an ideal population to
study the effects of HIV persistence on chronic inammation in the absence of antiretroviral therapy (ART).
Methods. Twenty inammatory markers measured in cohorts of ECs, HIV suppressed noncontrollers, and
HIV-uninfected controls were compared using rank-based tests and partial least squares discriminant analysis
(PLSDA). Spearman correlations were determined among the inammatory markers, residual viremia by the
single-copy assay, and CD4+ T cell slope.
Results. Signicant differences were seen between cohorts in 15 of the soluble inammatory markers. Human
immunodeciency virus-1 ECs were found to have the highest levels for all of the markers with the exception of
RANTES. In particular, median levels of 7 inammatory markers (soluble CD14 [sCD14], interferon [IFN]-,
IFN--inducible protein [IP]-10, interleukin [IL]-4, IL-10, sCD40L, and granulocyte-macrophage colony-stimulating
factor) were twice as high in the HIV-1 ECs compared with either of the HIV-suppressed or uninfected groups.
Multivariate PLSDA analysis of inammatory markers improved differentiation between the patient cohorts, discerning gender differences in inammatory prole amongst individuals on suppressive ART. Soluble markers of
inammation in ECs were not associated with either levels of residual HIV-1 viremia or CD4+ T cell decline.
Conclusions. Despite maintaining relatively low levels of viremia, HIV-1 ECs had elevated levels of a set of key
inammatory markers. Additional studies are needed to determine whether ECs may benet from ART and to
further evaluate the observed gender differences.
Keywords. antiretroviral therapy; gender; HIV elite controllers; inammation; low-level viremia.
The use of antiretroviral therapy (ART) has led to a dramatic decline in the mortality rates of individuals
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included only biomarkers with a VIP score >1 in all models. Individuals where 3 or more biomarker measurements were missing were excluded; this included 1 HIV-negative individual and
1 HIV-suppressed individual. Before analysis, all data were normalized with mean centering and variance scaling. Both of
these are commonly used methods for preprocessing data before multivariate analysis. Mean centering involves subtracting
the mean from each column of data. Variance scaling involves
dividing each column of data by the standard deviation of that
column. Both of these methods ensure that the model is not biased towards variables with naturally higher raw values or variance than other variables. Cross-validation is commonly
performed to evaluate how the models perform on unknown
data. We performed cross-validation by iteratively excluding
random subsets (10%) of data during model calibration,
then we used this excluded data to test model predictions.
Baseline Characteristics of the HIV ECs, HIV-Suppressed, and HIV-Uninfected Patient Cohortsa
Variable
Age (years)
ECs (N = 42)
Suppressed (N = 80)
Uninfected (N = 43)
P Value
49 [4555]
49 [4553]
49 [4451]
.78
Gender (%male)
81%
69%
67%
.31
Race
White (%)
74%
56%
53%
Black (%)
19%
36%
40%
2%
5%
6%
1%
7%
0%
807 [6901043]
534 [357762]
<.01
16 [1020]
15 [1020]
9 [512]
.64
Other (%)
Unknown (%)
CD4+ count (cells/L)
Duration of HIV infection (years)
Duration of ART (years)
.16
Significance testing by Kruskal-Wallis, Wilcoxon rank-sum, or 2 tests. Reported values are median [Q1Q3] or percentages.
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RESULTS
Table 2.
Soluble Markerb
ECs
Suppressed
Uninfected
sCD163
972 [8351487]
1264 [8231898]
862 [6521295]
sCD14
MCP-1
1292 [10791649]
258 [216288]
428 [2221589]
264 [196366]
213 [123375]
229 [190276]
KruskalWallis P Value
.03
<.001
.21
hsIL-6
1.1 [0.72.0]
1.0 [0.71.6]
0.9 [0.51.6]
IP-10
IL-1
461 [239689]
5 [38]
225 [127354]
2 [14]
182 [103330]
5 [39]
<.001
<.001
.48
IL-4
16 [924]
0 [00.4]
0 [044]
<.001
IL-5
IL-6
2.1 [1.43.7]
5 [38]
0.9 [0.51.6]
6 [310]
1.5 [0.92.4]
7 [314]
<.001
.25
IL-8
23 [1336]
8 [513]
14 [926]
<.001
IL-10
IL-12p70
11 [714]
15 [962]
5 [27]
10 [616]
5 [313]
13 [921]
<.001
.003
IL-13
TNF-
MIP-1
4 [17]
8 [322]
<.001
12 [815]
5 [38]
14 [1019]
7 [510]
<.001
<.001
43 [2681]
RANTES
sCD40L
1393 [8762221]
2247 [11853860]
31 [2146]
42 [2779]
2579 [22163200]
629 [3441235]
2253 [16253557]
1063 [4521386]
.01
<.001
<.001
IFN-
71 [27205]
18 [1132]
30 [1692]
<.001
GM-CSF
43 [32102]
13 [818]
18 [1229]
<.001
Abbreviations: ECs, elite controllers; GM-CSF, granulocyte-macrophage colony-stimulating factor; HIV, human immunodeficiency virus; hs, high-sensitivity; IFN,
interferon; IL, interleukin; IP-10, IFN--inducible protein 10; MCP, monocyte chemoattractant protein; MIP, macrophage inflammatory protein; sCD163, soluble
CD163; TNF, tumor necrosis factor.
a
Multiple testing was controlled using the Benjamini-Hochberg approach. Adjusted P values with a <5% false discovery rate are highlighted in bold.
The sCD163, sCD14, MCP-1, soluble TNF-receptor I, and hsIL-6 levels were measured using enzyme-linked immunosorbent assays, and the remaining soluble
markers were measured by a Luminex-based methodology. The sCD14 and sCD163 values are in ng/mL and the other markers in pg/mL.
Reported values are median [Q1-Q3].
men, the levels of sCD14 was 6.2 times higher in HIV-suppressed versus uninfected women (Supplementary Tables 1
and 2). Baseline demographics showed no signicant differences between HIV-suppressed and uninfected participants within
each gender (Supplementary Table 3), but the proportion of
black participants was higher in HIV-suppressed women than
men (56% vs 27%; Supplementary Table 4).
To explore differences in multivariate inammatory proles
between HIV-suppressed men and women, we generated a separate PLSDA model explicitly focused on this. We found that HIVsuppressed women had distinct multivariate inammatory
proles and clustered separately from HIV-suppressed men,
HIV-negative men, and HIV-negative women (Figure 3A). The
multivariate prole for HIV-suppressed women showed higher
levels of CD163, sCD14, and IL-6 and lower levels of GM-CSF,
IL-10, IL-13, and IL-1 (Figure 3B). This prole was more accurate for classifying these groups that any one of these factors alone.
CD4 cell counts were collected over a median 6.7 years in the
ECs (Q1Q3: 3.610.0 years). The CD4+ T-cell slope was
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MIP-1
9 [518]
17 [1327]
11 [518]
Figure 1. Levels of soluble CD14 (sCD14) (A), interferon--inducible protein (IP)-10 (B), interleukin (IL)-4 (C), IL-10 (D), sCD40L (E), interferon (IFN)- (F),
and granulocyte-macrophage colony-stimulating factor (GM-CSF) (G) among human immunodeciency virus (HIV)-1 elite controllers, HIV-suppressed, and
HIV-uninfected controls. Abbreviation: ECs, elite controllers.
Inammatory Markers in HIV ECs
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Figure 3. Human immunodeciency virus (HIV)-suppressed men and HIV-suppressed women have distinct inammatory proles. (A) Partial least squares
discriminant analysis revealed distinct inammatory proles in HIV-suppressed women (red circles) compared with HIV-uninfected women (blue circles).
Human immunodeciency virus-suppressed men (red squares) and HIV-uninfected men (blue squares) clustered more closely in the multivariate space.
Model performed with 89% classication accuracy and 88% cross-validation accuracy for classifying HIV-suppressed women. (B) Human immunodeciency
virus-suppressed women were associated with increased soluble CD163 (sCD163), sCD14, and interleukin (IL)-6, and decreased IL-1, IL-10, IL-13, and
granulocyte-macrophage colony-stimulating factor (GM-CSF).
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Figure 2. Partial least squares discriminant analysis (PLSDA) reveals elite controller (EC) plasma proles of inammatory markers are distinct from human
immunodeciency virus (HIV)-negative and HIV-suppressed proles. (A) Partial least squares discriminant analysis identied a multivariate prole of 11
inammatory markers that was able to classify ECs with 86% classication accuracy and 85% cross-validation accuracy (green dots, elite controllers;
blue dots, HIV negative; red dots, HIV suppressed). (B) Latent variable 1 (LV1) represents the multivariate prole that differentiates EC from HIV-uninfected
and HIV-suppressed, indicating that the EC prole was associated with elevation of soluble CD14 (sCD14), interferon--inducible protein (IP)-10, interferon
(IFN)-, tumor necrosis factor (TNF)-, macrophage inammatory protein (MIP)-1, sCD40L, interleukin (IL)-1, IL-8, IL-10, granulocyte-macrophage colonystimulating factor (GM-CSF), and reduced RANTES. (C) Classication error rates of the 3 most highly predictive markers and all markers in combination.
Abbreviation: VIP, variable importance projection.
0.10
.55
sCD14
MCP-1
0.02
0.19
.88
.25
hsIL-6
0.01
.93
IP-10
IL-1
0.37
0.27
.02
.09
IL-4
0.12
.46
IL-5
IL-6
0.11
0.02
.51
.88
.75
0.10
0.09
.54
.57
IL-13
0.16
.32
0.26
0.05
.10
.75
MIP-1
RANTES
sCD40L
IFN-
GM-CSF
0.00
.98
0.07
0.13
.67
.41
0.00
.98
0.02
.89
The sCD163, sCD14, MCP-1, soluble TNF-receptor I, and hsIL-6 levels were
measured using ELISA, and the remaining soluble markers were measured by
a Luminex-based methodology.
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0.05
IL-10
IL-12p70
TNF-
MIP-1
P Value
sCD163
IL-8
Spearman r
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Acknowledgments
We thank the patients for participation.
Financial support. This study was supported in part by The International HIV Controllers Study, funded by the Bill and Melinda Gates Foundation, the AIDS Healthcare Foundation, and the Harvard University
Center for AIDS Research (CFAR), a National Institutes of Health (NIH)funded program (NIH P30 AI060354), which is supported by the following
NIH Co-Funding and Participating Institutes and Centers: National Institute of Allergy and Infectious Diseases, National Cancer Institute, Eunice
Kennedy Shriver National Institute of Child Health and Human Development, National Heart, Lung, and Blood Institute, National Institute on Drug
Abuse, National Institute of Mental Health, National Institute on Aging,
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