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Lack of Association between CYP1A1 M2 and M4 Polymorphisms and Breast Carcinoma in Jordanian Women: a Case-Control
RESEARCH ARTICLE
Lack of Association between CYP1A1 M2 and M4 Polymorphisms
and Breast Carcinoma in Jordanian Women: a Case-Control
Study
Background: CYP1A1 is a candidate gene for low-penetrance breast cancer susceptibility, as it plays an
important role in the metabolism of carcinogens and estrogens. Purpose: The objective of this study was to assess
the association between M2 (A2455G, Ile462Val) and M4 (C2453A, Thr461Asn) polymorphisms in CYP1A1 and
breast cancer risk among Jordanian women and in subgroups stratified by menopausal status and smoking
history. Materials and Methods: Blood samples were collected from 112 breast cancer female patients and 115
age-matched controls who underwent breast cancer screening with imaging and showed negative results (BIRADS I or BI-RADS II). Genotyping was performed using the PCR-RFLP technique. Results: No statistically
significant overall association was found between breast cancer risk and CYP1A1 M2 genotypes (p-value = 0.55;
OR = 0.77; 95% CI= 0.32 - 1.83) nor with the M4 polymorphism (p-value= 0.95; OR= 0.95; 95% CI= 0.51- 1.88).
Analysis of subgroups defined by menopausal status or smoking history also revealed no association with these
polymorphisms. Furthermore, the four identified haplotypes (AC; AA; GC and GA) were equally distributed
among cases and controls, and haplotype analysis showed a strong linkage disequilibrium of both studied loci
in either cases or controls (D=1). Conclusions: Based on the study results, CYP1A1 M2 and M4 polymorphisms
do not seem to play a major role in breast cancer risk among Jordanian females.
Keywords: CYP1A1, breast cancer, genotype, genetic polymorphism, SNP, Jordanian women, menopause, smoking.
Asian Pac J Cancer Prev, 17 (1), 387-393
Introduction
Breast cancer is the most common female malignancy
worldwide. According to the latest statistics in 2010, breast
cancer ranked first among cancers in Jordanian women
accounting for 37.4% of all female cancers (Tarawneh
et al., 2010). Breast cancer is both genetically and
histopathologically heterogeneous and the mechanisms
underlying breast cancer development remain poorly
understood (Stuckey, 2011). Genetic studies have identified
and confirmed four rare high-penetrance genes (BRCA1,
BRCA2, TP53 and PTEN), four rare moderate-penetrance
genes (CHEK2, ATM, BRIP1 and PALB2), and more than
20 common low-penetrance variants in 19 genes or loci
that contribute to a womans risk of breast cancer (Zhang
et al., 2011; Huo et al., 2012). Low penetrance genes pose
a low risk at the individual level but are more common in
general population. Modulated by environmental exposure
and lifestyle factors, these genes account for most sporadic
breast cancer cases and are likely to explain the majority
(90-95%) of all breast cancer cases (Weber and Nathanson,
Department of Pharmacy, Faculty of Medicine, University of Batna, University of Batna, Algeria, 2Department of Biopharmaceutics
and Clinical Pharmacy. Faculty of Pharmacy, The University of Jordan, 3Department of Hematology and Oncology, 4Department
of Surgery, The University of Jordan Hospital, 5Department of Surgical Oncology, 6Department of Radiology, King Hussein Cancer
Center, Amman, Jordan *For correspondence: im.amrani@univ-batna.dz
1
387
Iman Amrani et al
388
DOI:http://dx.doi.org/10.7314/APJCP.2016.17.1.387
Lack of Association between CYP1A1 M2 and M4 Polymorphisms and Breast Carcinoma in Jordanian Women: a Case-Control
Haplotype analysis
The interaction between genetic polymorphism at
the two loci was assessed by haplotype analysis. We
analyzed haplotype frequencies of the two SNPs for breast
cancer cases and compared them with those of controls.
Haplotype frequencies were calculated using Golden
Helix Tree software and linkage disequilibrium was
represented by D prime (D). The Golden Helix software
enables to estimate haplotype frequencies even with some
missing data of one or both SNPs. Similar findings were
obtained utilizing Multiallelic Interallelic Disequilibrium
Analysis Software (University of Southampton, Highfield,
Southampton, UK) (PMID: 16643648).
Statistical analysis
Statistical analysis was performed using the Statistical
Package for Social Sciences (SPSS) software (SPSS Inc,
USA) version 17.0.The association between CYP1A1
M2 and M4 polymorphisms and breast cancer risk was
analyzed by calculating the crude odds ratios (OR) and
95% confidence intervals (95% CI) using Chi-square
Cases (N=112)
% or MeanSd
Controls (N=115)
% or Mean Sd
P Value: Cases
vs. Controls
Age
50.189.43
48.038.21
0.69
Educational level
Illiterate / elementary school
18.7%
6.1%
0.009
Middle and High school
27.7%
38.3%
College or higher
53.6%
55.6%
Family monthly income
<250JDb
25%
10.4%
0.004
>250JD
75%
89.6%
Age at menarche
<14
55.5%
66.7 %
0.76
14
44.5 %
33.3 %
Regular period
83%
87%
0.39
Menopausal status
Pre-menopausal
67.9 %
63.5%
0.88
Post-menopausal
32.1 %
36.5%
Age at menopause
44.449.07
46.507.29
0.30
Parous
81.3%
88.7%
0.12
Age at first delivery (if parous)
24.555.42
23.355.14
0.12
Breastfeeding
77.7%
83.4%
0.27
Family history of breast cancer in the first degree relatives
14.3%
8.7%
0.19
Direct hit to the breast
17.9 %
8.7%
0.001
Body size/ Lifestyle
BMI c
28.655.41 27.74.34 0.15
WHRd
0.870.07 0.850.10 0.07
Ever smokers
16.1%
25.2%
0.09
Number of pack-years (if smoker)e
11.947.62
9.528.87
0.34
Physical activity in the last 5 years f
40.2% 62.6% 0.001
Occasional alcohol intake
6.3%
11.3%
0.179
High fat intake
28.6%
21.7%
0.23
Exogenous hormone use
Ever used OCs g
44.6% 49.6% 0.458
Years of OCs use among users
3.87 4.06
2.903.59
0.19
Years of HRT use among users
2.805.04
2.863.55
0.98
a: Valid percentage (There are missing data). b: Jordanian Dinar. c: Body mass index. d: waist to hip ratio. e: Number of pack years = (number of
cigarettes smoked per day x number of years smoked)/20 (1 pack contains 20 cigarettes). f: Physical activity in the last 5 years for controls and the
5 years prior to diagnosis for patients. g: Oral contraceptives, ever users are defined as women who used oral contraceptives for a duration equal
or longer than 1 month. only p values for statistically significant differences are highlighted in bold
389
Iman Amrani et al
Results
CYP1A1 M2 (Ile462Val)
Ile/Ile
102 (91.07) 102 (88.4)
1.00
0.55
Ile/Val
10 (8.93) 12 (10.43)
-
Val/Val
0 (0)
1 (0.87)
-
Ile/Val,
+Val/Val
10 (8.93) 13 (11.6) 0.77 (0.32-1.83)
CYP1A1 M4 (Thr461Asn)
Thr/Thr
90 (80.4)
92 (80.0)
1.00
0.95
Thr/Asn
21 (18.7)
22 (19.1)
-
Asn/Asn
1(0.9)
1 (0.9)
-
Thr/Asn,
+ Asn/Asn 22 (19.6)
23 (20.0) 0.95 (0.51-1.88)
Cases
n (%)
Controls
n (%)
OR P value
(95% CI)
Table 3. Association Between CYP1A1 M2 and M4 Genotypes and Breast Cancer According to Menopausal Status
Genotype
Premenopausal women
OR (95%CI)
n (%)
Cases Controls
Postmenopausal women
n (%)
OR(95%CI)
Cases Controls
CYP1A1 (Ile462Val)
Ile/Ile
69 (88.5)
68 (86.1)
0.8 (0.31-2.06)
33 (97.1)
34 (94.4)
0.51 (0.04-5.96)
Ile/Val+Val/Val
9 (11.5)
11 (13.9)
1 (2.9)
2 (5.6)
CYP1A1(Thr461Asn)
Thr/Thr
63 (80.8)
66 (83.5)
1.21 (0.53-2.74)
27 (79.4)
26 (72.2)
0.67 (0.22-2.04)
Thr/Asn + Asn/Asn
15 (19.2)
13 (16.5)
7 (20.6)
10 (27.8)
390
DOI:http://dx.doi.org/10.7314/APJCP.2016.17.1.387
Lack of Association between CYP1A1 M2 and M4 Polymorphisms and Breast Carcinoma in Jordanian Women: a Case-Control
Table 4. Association between CYP1A1 M2 and M4 Genotypes and Breast Cancer According to Smoking History
Genotype
Cases Controls
CYP1A1 (Ile462Val)
Ile/Ile
Ile/Val+Val/Val
CYP1A1(Thr461Asn)
Thr/Thr
Thr/Asn + Asn/Asn
OR (95%CI)
84 (89.4)
10 (10.6)
77 (89.5)
1.09 (0.39-2.64)
9 (10.5)
74 (78.7)
20 (21.3)
71 ( 82.6)
1.28 (0.61-2.69)
15 (17.4)
AC
AA
GC
GA
D
r2
Cases
OR(95%CI)
Cases Controls
Control
161 162
18 19
8 10
1 1
1 1
0.00535 0.00755
Discussion
In the current study, we investigated the relation
between the two genotypes of CYP1A1, M2 (Ile462Val)
and M4 (Thr461Asn) and breast cancer risk in Jordanian
female breast cancer patients compared to age-matched
Jordanian female controls. To the best of our knowledge,
this is the first study among Jordanian women assessing
the interaction of both M2 and M4 genetic polymorphisms
and breast cancer. This is also the first case-control study
18 (100)
0 (0)
16 (88.9)
2 (11.1)
25 (86.2)
4 (13.8)
21 (72.4)
8 (27.6)
0.33 (0.06-1.76)
391
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DOI:http://dx.doi.org/10.7314/APJCP.2016.17.1.387
Lack of Association between CYP1A1 M2 and M4 Polymorphisms and Breast Carcinoma in Jordanian Women: a Case-Control
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