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Cre/lox-mediated Marker Gene Excision in Elite Indica Rice Plants Transformed with Genes Conferring Resistance to Lepidopteran Insects
CHEN Song-Biao1, LIU Xiang1, PENG Hai-Ying2, GONG Wang-Kui1, WANG Rui1, WANG Feng2, ZHU Zhen1*
(1. Institute of Genetics and Developmental Biology, The Chinese Academy of Sciences, Beijing 100101, China;
2. Fujian Provincial Key Laboratory of Agricultural Genetic Engineering, Fujian Academy of Agriculture Sciences,
Fuzhou 350003, China)
Abstract: Cre/lox -mediated gene excision in commercial rice (Oryza sativa L.) plants was studied with
a recombination-reporter gene system, in which the selectable marker hygromycin phosphotransferase
gene (hpt) flanking by two directly oriented lox sites was located between the rice actin1 promoter and a
promoterless gusA gene. This system allows visualization of GUS expression by activating promoterless
gusA after site-specific recombination. The crossing strategy was used to introduce the cre gene into the
lox plants. In 30 hybrid plants from four crosses made from T0 actin1 promoter-lox -hpt -lox -gusA plant with
T0 cre plant, 12 expressed GUS and 9 showed hygromycin-sensitive. We furthermore demonstrated the
utility of the Cre/lox in excision of hpt marker gene in an elite indica rice restorer Minghui 86 transformed
with both insecticidal modified cowpea trypsin inhibitor gene sck and Bacillus thuringiensis endotoxin gene
cryIAc. In 77 hybrid plants from nine crosses made from T2 homozygous lox -hpt -lox -sck -cryIAc plant with
T2 homozygous cre plant, 56 showed hygromycin-sensitive. Molecular analyses confirmed the excision of
hpt in all hygromycin-sensitive plants.
Key words: Cre/lox ; gene excision; transgenic rice; insect resistance; sck ; cryIAc; marker-free
Selectable marker genes are commonly used in transformation systems for the recovery of transgenic plants.
However, the maintenance of marker genes in transgenic
plants has caused environmental and consumer concerns
in recent years. Although no scientific basis has been determined for these concerns, the absence of selectable
marker genes would certainly contribute to the public acceptance of transgenic crops (Zuo et al., 2001). Moreover,
the removal of marker genes is also a reasonable strategy
for gene stacking through re-transformation using the same
marker gene (Yoder and Goldsbrough, 1994). To this end,
several strategies have been proposed to generate markerfree transgenic plants, including co-transformation,
transposon-mediated repositioning, intrachromosomal recombination and site-specific recombination (Ebinuma
et al., 2001).
Site-specific recombination systems, such as Cre/lox
(Austin et al., 1981), R/RS (Araki et al., 1987) and FLP/FRT
(Broach et al., 1982), consist of a recombination enzyme
and two small DNA recognition sites. These recombination enzymes can interact with its specific recognition sites
and result in excision of the intervening DNA, when two
CHEN Song-Biao et al.: Cre/lox-mediated Marker Gene Excision in Elite Indica Rice Plants Transformed with Genes Conferring
Resistance to Lepidopteran Insects
gene, named sck (Deng et al., 2003) or both sck and cryIAc
genes with highly resistance to lepidopteran insects
(unpublished data). In this study, we investigated the function of the Cre/lox, one of the most widely studied sitespecific recombination systems, in rice by a recombination-reporter gene system. The results showed that the Cre/
lox system could control gene excision efficiently in rice.
Based on this, we furthermore demonstrated the utility of
Cre/lox in excision of selectable marker gene in commercial
rice plants transformed with insecticidal genes sck and
cryIAc.
Plasmid pCUBACloxHpt was derived by inserting a fragment containing both a sck gene (Deng et al., 2003) controlled by the rice actin1 promoter and a cryIAc gene (Cheng
et al., 1998) controlled by the maize ubiquitin promoter
(Christensen and Quail, 1996) into the Hind site of
pCloxHpt.
1.2 Transformation of rice plants and crossing of
transgenic plants
Plant expression vectors pCACreBar, pCALHGUS and
pCUBACloxHpt were transferred into Agrobacterium
tumefaciens LBA4404 by electroporation according to the
instruction of Escherichia coli pulser apparatus (BIORAD). The elite indica rice restorer line, Minghui 86, was
used for transformation. Rice plants were grown under field
conditions, and immature embryos 1215 d after pollination were isolated for tissue culture and transformation
experiments. One-month-old calli induced on N6-based
(Chu, 1978) medium were then used as explants for
Agrobacterium-mediated transformation by following essentially the protocol of Hiei et al. (1994). Stably
pCACreBar-transformed plants were selected for
phosphinothricin (ppt) resistance and pCALHGUS- and
pCUBACloxHpt-transformed plants were selected for
hygromycin resistance. To excise hpt from transgenic rice
plants, the crossing strategy was used to introduce the cre
gene into the lox plants. For pCALHGUS-transformed
plants, primary T0 transformants were crossed with primary
T0 pCACreBar-transformed plants and for pCUBACloxHpttransformed plants, homozygous T2 generation plants were
produced to cross with homozygous T2 pCACreBar-transformed plants.
1.3 Plant assays
GUS activity in leaves or in whole plants of rice seedlings was performed according to Jefferson et al. (1987).
Hygromycin resistance of rice seedlings was assayed by
leaf culture method as essentially described by Wang and
Waterhouse (1997). Seeds were germinated and grown in
the greenhouse for about 1 month. Leaf tip of the first expanding leaf was cut and cultured on MS media containing
0.5 mg/L 6-BA and 100 mg/L hygromycin for about 68 d to
assay hygromycin resistance.
1.4 Molecular analysis
Total genomic DNA was extracted from leaves, as described by Murray and Thompson (1988). PCR was carried
out under standard conditions with oligonucleotide primers for hpt, gusA, cre, sck and cryIAc genes, resulting in
fragments of 0.85 kb, 0.99 kb, 1.0 kb, 0.42 kb and 0.74 kb
respectively. Primer sequences were 5 'TA C A C A G C C AT C G G T C C A G A - 3 ' a n d 5 ' -
TAGG AG GG CGT GG ATAT GT C-3 ' fo r h p t , 5 'C G AA C T G A A C T G G C A G A C TAT C - 3 ' a n d 5 ' GGTTCAGGCACAGCACATCAAAG-3' for gusA, 5'AT G T C C A AT T T A C T G A C C G T- 3 ' a n d 5 ' C TA AT C G C C AT C T T C C AG C A - 3 ' f o r c re , 5 'A A A AT G A A G A G C A C C AT C T T C - 3 ' a n d 5 ' TCTAGAGTTCATCTTTCTCATC-3' for sck, 5'T GCAGAGAGCT TCAGAGAGTG-3' and 5'ACACCCTGACCTAGTTGAGC-3' for cryIAc. For Southern blotting analysis, about 20 g of genomic DNA digested
with restriction endonuclease (NEB) was separated through
electrophoresis in 1.0% agarose gel and blotted onto
Hybond-N+ nylon membranes (Amersham Pharmacia). Blots
were hybridized with sck, cryIAc, hpt and cre, using the
PCR-generated fragments of sck, cryIAc, hpt and cre
(primers and conditions as described above) labeled with
[-32P] dCTP as probes.
Results
Fig.1. Maps of plant expression vectors. a. pCACreBar. b. pCALHGUS. c. pCUBACloxHpt. cre, recombinase gene of Cre/lox system;
bar, phosphinothricin-N-acetyltaensferase gene; gusA, -glucuronidase gene; hpt, hygromycin phosphotransferase gene; sck, modified
cpti gene with a signal peptide and a KDEL coding sequences at 5' and 3' ends (Deng et al., 2003); cryIAc, Bacillus thuringiensis endotoxin
gene; Pactin, promoter of rice actin1 gene; Pmas, promoter of mannopine synthase gene; Pubi, promoter of maize ubiquitin gene; Tnos,
terminator of nos gene; Tocs, terminator of ocs gene; lox, specific recognition site of Cre/lox system; LB, RB, left and right borders of TDNA.
CHEN Song-Biao et al.: Cre/lox-mediated Marker Gene Excision in Elite Indica Rice Plants Transformed with Genes Conferring
Resistance to Lepidopteran Insects
Cross
No. of tested F1 hybrid plants
No. of GUS+ plants
No. of hyg S plants
Pactin-lox-hpt-lox-gusA-2 cre-1
3
1
1(1)
Pactin-lox-hpt-lox-gusA-3 cre-1
8
3
2
Pactin-lox-hpt-lox-gusA-7 cre-3
12
6
5
Pactin-lox-hpt-lox-gusA-10 cre-3
7
2
1
Total
30
12
9
lox-hpt-lox-sck-cryIAc-2 cre-3
18
18 (2)
lox-hpt-lox-sck-cryIAc-8 cre-1
8
8
lox-hpt-lox-sck-cryIAc-11 cre-1
11
8
lox-hpt-lox-sck-cryIAc-11 cre-3
9
9
lox-hpt-lox-sck-cryIAc-12 cre-1
2
2
lox-hpt-lox-sck-cryIAc-12 cre-3
5
3
lox-hpt-lox-sck-cryIAc-20 cre-3
12
6
lox-hpt-lox-sck-cryIAc-29 cre-1
7
4
lox-hpt-lox-sck-cryIAc-29 cre-3
5
4
Total
77
56
Pactin-lox-hpt-lox-gusA, plants transformed with vector pCALHGUS; cre, plants transformed with vector pCACreBar; lox-hpt-lox-sckcryIAc, plants transformed with vector pCUBACloxHpt; GUS+, GUS-positive; hygS, hygromycin-sensitive. (1), only GUS+ plants were tested;
(2), all F1 hybrid plants were tested.
Fig.4. PCR analysis of hybrids of Pactin-lox-hpt-lox-gusAplant cre-plant for the gusA, hpt and cre genes. a. Samples of
amplification fragment for gusA. b. Samples of amplification fragment for hpt. c. Samples of amplification fragment for cre. M,
molecular marker; N, non-transgenic control plant; P, positive
control; 1, parental Pactin-lox-hpt-lox-gusA-plant; 27, hybrid
rice plants of Pactin-lox-hpt-lox-gusA-7cre-3 (Table 1); 8, parental cre-plant.
Fig.5. Southern analysis of hybrids of lox-hpt-lox-sck-cryIAcplant cre-plant. ac. Genomic DNA was digested with the
restriction enzyme BamH and hybridizations were done with
sck, cryIAc or hpt probe respectively. d. Genomic DNA was
digested with the restriction enzyme Hind and hybridizations
were done with cre probe. P, the 0.56-kp sck-Tnos fragment, 2.1kp cryIAc-Tnos fragment and 1.05-kp hpt fragment digested by
BamH from plasmid pCUBACloxHpt (Fig.1c) and the 1.0-kb
cre fragment digested by Hind from plasmid pCACreBar (Fig.
1a) were analyzed as positive control for ac and d respectively;
N, non-transgenic control plant; 1, parental lox-hpt-lox-sck-cryIAcplant; 2-5 hybrid rice plants of lox-hpt-lox-sck-cryIAc-8cre-1
(Table 1); 6, parental cre-plant.
CHEN Song-Biao et al.: Cre/lox-mediated Marker Gene Excision in Elite Indica Rice Plants Transformed with Genes Conferring
Resistance to Lepidopteran Insects
lane 6).
3 Discussion
The Cre/lox site-specific recombination system from E.
coli phage P1 has been well characterized. Cre is a 38.5-kD
protein that recognizes and interacts with two 34-bp lox
recognition sequences resulting in excision, integration or
inversion of the intervening DNA sequences depending
on the orientation of lox sites. The Cre/lox system has
been used successfully to manipulate transgenes or chromosomes in the nuclear genomes of a wide variety of organisms including animals (Gorman and Bullock, 2000) and
plants (Ow, 2002). In plants, the Cre/lox-mediated manipulation included chromosome recombination, translocation
or deletion (Koshinsky et al., 2000; Vergunst et al., 2000),
site-specific integration of the transgenes (Albert et al.,
1995; Vergunst and Hooykaas, 1998; Vergunst et al., 1998;
Day et al., 2000), reducing the copy number of DNA inserts
in the host genome (Srivastava et al., 1999) and deletion of
selectable marker genes from the host genomes (Dale and
Ow, 1991; Russell et al., 1992; Gleave et al., 1999; Zuo et
al., 2001; Endo et al., 2002; Zhang et al., 2003).
In the present study, we demonstrated the Cre/lox-mediated excision of selectable marker hpt gene in the rice
plants using a recombination-reporter gene system. The
excision of lox-hpt-lox led to the fusion of the gusA gene to
the rice actin1 promoter and consequently activated the
expression of gusA gene. The crossing strategy was used
to introduce the cre gene into the lox plants and four
crosses were made from T0 Pactin-lox-hpt-lox-gusA-plant
with T0 cre-plant. The recombination was found in all four
crosses although the efficiency of the recombination
(expressed as the percentage of GUS expression plants)
varied among individual crosses. Leaf assay on
hygromycin-containing medium and PCR amplification confirmed the excision of hpt from the hybrid plants genome.
Chimeric excision of transgenes in host genomes mediated by site-specific recombination system was reported to
be a common phenomenon in many experiments (Dale and
Ow, 1991; Russell et al., 1992; Onouchi et al., 1995; Bar et
al., 1996; Hoa et al., 2002). In this study, we also found that
in a few cases of the tested hybrid plants, the GUS expression phenotype was inconsistent with the hygromycin-resistant phenotype (Table 1) and these plants also yielded
the expected 845-bp fragment when PCR analysis was carried out using the specific primers for hpt gene. These results suggested that the recombination in these plants was
induced at early germinal stage, or is random during the
somatic development stage (Hoa et al., 2002) and the
excision of hpt was incomplete. To improve the recombination efficiency, it might need to select transformants with
high expression of Cre to produce hybrid plants (Bayley et
al., 1992).
Site-specific recombination systems have been used to
successfully excise marker genes in plants, including economically important crops rice and maize (Endo et al., 2002;
Hoa et al., 2002; Zhang et al., 2003). However, most of
these experiments were carried out based on reporter genes
such as gusA or gfp to detect the gene excision. Here we
demonstrated the utility of Cre/lox in excision of selectable
marker gene in commercial rice plants transformed with insecticidal genes. Instead of using reporter genes to detect
the recombination, we monitored the hpt excision by a
simple leaf assay method. In 77 hybrid plants made from T2
homozygous plants carrying sck and cryIAc with T2 homozygous plants carrying cre, 56 were found with
hygromycin-sensitive phenotype and confirmed of the excision of hpt by molecular analysis. Therefore, after removal
of the cre and bar gene constructs in hybrid plants by
genetic segregation, plants might be obtained that contained only the sck and cryIAc genes and used to develop
commercial insect-resistant lines. The absence of selectable marker genes would contribute to the public acceptance of transgenic rice.
Acknowledgements: The authors wish to thank Dr. P J J
Hooykaas and Dr. A C Vergunst, Institute of Molecular
Plant Sciences, Leiden University, for kindly providing plasmid pUC19-cre.
References:
Albert H, Dale E C, Lee E, Ow D W. 1995. Site-specific integration of DNA into wild-type and mutant lox sites in the plant
genome. Plant J, 7: 649659.
Araki H, Jearnpipatkul A, Tatsumi H, Sakurai T, Ushino K, Muta
T, Oshima Y. 1987. Molecular and functional organization of
yeast plasmid pSR1. J Mol Biol, 182: 191203.
Austin S, Ziese M, Sternberg N. 1981. A novel role of site-specific recombination in maintenance of bacterial replicons. Cell,
25: 729736.
Bar M, Leshem B, Gilboa N, Gidoni D. 1996. Visual characterization of recombination at FRT-gusA loci in transgenic tobacco
mediated by constitutive expression of the native FLP
recombinase. Theor Appl Genet, 93: 407413.
Bayley C, Morgan M, Dale E C, Ow D W. 1992. Exchange of
gene activity in transgenic plants catalyzed by the Cre-lox
site-specific recombination system. Plant Mol Biol, 18: 353
281.
Broach J R, Guarascio V R, Jayaram M. 1982. Recombination
within the yeast plasmid 2 micron circle is site specific. Cell,
29: 227234.
Cheng X, Sardana R, Kaplan H, Altosaar I. 1998. Agrobacteriumtransformed rice plants expressing synthetic cryIA(b) and cryIA
Hoa T T C, Bong B B, Huq E, Hodge T K. 2002. Cre/lox sitespecific recombination controls the excision of a transgene
from the rice genome. Theor Appl Genet, 104: 518525.
Jefferson R A, Kavanagh T A, Bevan M W. 1987. GUS fusions:
(c) genes are highly toxic to striped stem borer and yellow
213218.
Dale E C, Ow D W. 1991. Gene transfer with subsequent removal
of the selection gene from the host genome. Proc Natl Acad Sci
2880.
Deng C-Y, Song G-S, Xu J-W , Zhu Z. 2003. Increasing accumu-
2: 163171.
Mozo T, Hooykaas P J J. 1992. Design of a novel system for the
14: 494498.
CHEN Song-Biao et al.: Cre/lox-mediated Marker Gene Excision in Elite Indica Rice Plants Transformed with Genes Conferring
Resistance to Lepidopteran Insects
393406.
107: 11571168.
Zhou H-Y , Chen S-B, Li X-G , Xiao G-F , Wei X-L , Zhu Z ().
2734.
19: 157161.