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Most biologically important functional groups contain oxygen and nitrogen, which are
among the most electronegative elements.
As a result, many of these functional groups are polar, and their polar nature plays a crucial
role in their reactivity.
Some groups that are vitally important to organic chemists are missing from the table below
because molecules containing these groups, such as alkyl halides and acyl chlorides, do not
have any particular applicability in biochemistry.
Conversely, carbon-containing derivatives of phosphoric acid are mentioned infrequently
in beginning courses on organic chemistry, but esters and anhydrides of phosphoric acid
are of vital importance in biochemistry.
o Adenosine triphosphate (ATP), a molecule that is the energy currency of the cell,
contains both ester and anhydride linkages involving phosphoric acid.
Important classes of biomolecules have characteristic functional groups that determine
their reactions.
1.3 The Beginnings of Biology: Origin of Life
1.3.1 The Earth and Its Age
1.3.1.1 How and when did the Earth come to be?
In its earliest stages, the Universe had a fairly simple composition. Hydrogen, helium, and
some lithium (the three smallest and simplest elements on the periodic table) were present,
having been formed in the original big-bang explosion.
The rest of the chemical elements are thought to have been formed in three ways: (1) by
thermonuclear reactions that normally take place in stars, (2) in explosions of stars, and (3)
by the action of cosmic rays outside the stars since the formation of the galaxy.
The most abundant isotopes of biologically important elements such as carbon, oxygen,
nitrogen, phosphorus, and sulfur have partially stable nuclei. These elements were
produced by nuclear reactions in first-generation stars, the original stars produced after the
beginning of the Universe.
1.3.2 Biomolecules
1.3.2.1 How were biomolecules likely to have formed on the early Earth?
Experiments have been performed in which the simple compounds of the early atmosphere
were allowed to react under the varied sets of conditions that might have been present on
the early Earth.
G = H TS
In this equation, G is the free energy, as before; H stands for the enthalpy, and S for the
entropy. Discussions of the first law focus on the change in enthalpy, H, which is the heat
of a reaction at constant pressure.
From a statistical point of view, an increase in the entropy of a system (the substance or
substances under consideration) represents an increase in the number of possible
arrangements of objects, such as individual molecules. Books have a higher entropy when
they are scattered around the reading room of a library than when they are in their proper
places on the shelves. Scattered books are clearly in a more dispersed state than books on
shelves.
Another statement of the second law is this: In any spontaneous process, the entropy of the
Universe increases (Suniv > 0). This statement is general, and it applies to any set of
conditions. It is not confined to the special case of constant temperature and pressure, as is
the statement that the free energy decreases in a spontaneous process.
Entropy changes are particularly important in determining the energetics of protein folding.