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Relaxed
supercoiled
Topoisomerases Alter DNA Supercoiling
Topoisomerases group of enzymes that catalyze the alteration of the topological
state of circular DNA but not its covalent structure.
2 Classes:
1. Type I Topoisomerases act by creating transient single-strand breaks in DNA.
a. Type IA Topoisomerases catalyze the relaxation of negatively supercoiled DNA
only by changing the linking number by increments of one. They reversibly
catenate (interlink) single-stranded circles.
b. Type IB Topoisomerases can relax both negative and positive supercoils by
transiently cleaving one strand of a duplex DNA through a nucleophilic attack on
the active site of DNA P yielding a 3-linked phosphor-Tyr intermediate.
Proposed Mechanism for Type IA Topoisomerases
Topoisomerases Alter DNA Supercoiling
2. Type II Topoisomerases -
multimeric enzymes that
require hydrolysis to complete
a reaction cycle in which two
DNA strands are cleaved.
duplex DNA is passed through
the break, and the break is
resealed. Both prokaryotic and
eukaryotic Type II enzymes
relax negative and positive
supercoils.
*DNA Gyrase it can
introduce negative supercoils
Forces Stabilizing Nucleic Acid Structures
A. DNA can undergo Denaturation and Renaturation
- denaturation causes the native structure of DNA to collapse and its two complementary
strands separate and assume random conformations. It also causes the absorbance of DNA to increase
by 40% (Hyperchromic effect)
Agents of DNA denaturation include a characteristic high temperature and chemical that induce
unwinding of duplex DNA.
Forces Stabilizing Nucleic Acid Structures
Denaturation of DNA is a cooperative phenomenon in
which the collapse of one part of the structure
destabilizes the remainder.
Melting Temperature, Tm temperature at its midpoint
in which the duplex DNA optimally collapses and
unwind to single strands. It is affected by nature of the
solvent used, identities and concentrations of the ions
in solutions, and the pH. It increases linearly with the
mole fraction of G.C base pairs.