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DOI 10.1007/s00228-003-0606-2
Abstract Objective: The frequency of functionally *1). The CYP1A1*2A allele was found in 4.7%, *2B in
important mutations and alleles of genes coding for 5.0%, *4 in 2.6%, and the 5-mutations )3219C>T,
xenobiotic metabolizing enzymes shows a wide ethnic )3229G>A, and the novel )4335G>A in 6.0%, 2.9%
variation. However, little is known of the frequency and 26.0% of alleles, respectively. Genotyping of eight
distribution of the major allelic variants in the Russian dierent single nucleotide polymorphisms in the NAT2
population. gene provided in 58.0% a genotype associated with slow
Methods: Using polymerase chain reaction/restriction acetylation. The MDR1 triple variants G2677T and
fragment length polymorphism (PCR/RFLP) genotyp- G2677A in exon 21 had an allelic frequency of 41.9%
ing assays and the real-time PCR with uorescent and 3.3%, respectively, and the variant C3435T in exon
probes, the frequencies of functionally important vari- 26 one of 54.3%. Frequencies of functionally important
ants of the cytochromes P450 (CYP) 2C9, 2C19, 2D6, haplotypes were calculated.
1A1 as well as arylamine N-acetyltransferase 2 (NAT2) Conclusion: The overview of allele distribution of
and P-glycoprotein (MDR1) were determined in a important xenobiotic-metabolizing enzymes among a
sample of 290 Russian volunteers derived from Voro- Russian population shows similarity to other Cauca-
nezh area. sians. The data will be useful for clinical pharmacokinetic
Results: CYP2C9*2 and *3 alleles were found with investigations and for drug dosage recommendations in
allelic frequencies of 10.5% and 6.7%, respectively. The the Russian population.
novel intron-2 T>C mutation at exon 2 +73 bp oc-
curred in 24.8% of alleles. CYP2C19*2 and *3 alleles Keywords Cytochrome P450 CYP NAT2 MDR1
occurred in 11.4% and 0.3%, respectively. Six persons Russians Haplotypes
(2.1%) carried two of these CYP2C19 alleles responsible
for poor metabolizing activity. Of all subjects, 5.9%
were CYP2D6 poor metabolizers, whereas 3.4% were Introduction
addressed to ultra-rapid metabolizers (CYP2D6*12/
Drug-metabolizing enzymes (DMEs) play a multiple
role in the organism. They inactivate drugs and xeno-
E. A. Gaikovitch (&) P. M. Mrozikiewicz R. Frotschl biotics preparing them for excretion [1]. However, they
K. Kopke T. Gerloff I. Roots
Institute of Clinical Pharmacology, are also capable of activating prodrugs or of trans-
University Clinic Charite, Humboldt University of Berlin, forming foreign compounds to highly reactive interme-
Schumannstrasse 20/21, 10098 Berlin, Germany diates that might act as carcinogens or mutagens.
E-mail: elena.gaikovitch@charite.de Therefore, DMEs also play a key role in the etiopa-
Tel.: +49-30-450525229
Fax: +49-30-450525925 thology of several malignancies [2]. Genetic dierences
in the regulation, expression, and activity of DME genes
E. A. Gaikovitch J. N. Chernov might be crucial factors in dening cancer susceptibility,
Department of Clinical Pharmacology,
Voronezh State Medical Academy, Voronezh, Russia as well as in determining the ecacy of drugs and the
toxic potential of environmental pollutants. Almost all
I. Cascorbi
Institute of Pharmacology, Ernst-Moritz-Arndt University,
DMEs are subject to genetic polymorphism. The activity
Greifswald, Germany of these variant enzymes ranges from the absolute
absence to high metabolizing capacity.
J. Brockmoller
Department of Clinical Pharmacology,
The allelic distribution of the major genes coding for
Georg-August University, Gottingen, Germany xenobiotic metabolizing cytochrome P450, namely
304
Haplotype analysis
CYP2C19
MDR1
The triple polymorphism in exon 21 (2677G>T/A) was genotyped The frequency of the mutations m1 (681G>A) and m2
using hybridization probes assay [34] and the variant in exon 26 (636G>A) coding for poor metabolizing activity was
(3435C>T) of MDR1 using PCR-RFLP [20]. 11.4% (8.914.3%) and 0.3% (0.041.2%), respectively.
306
Table 1 Frequencies ofCYP2C9 and CYP2C19 genotypes in a (0.42.2%), *4 - 18.2% (15.121.5%), *5 - 2.4% (1.3
sample of the Russian population (n=290). EM extensive metab- 4.0%), *6 - 1.2% (0.52.5%), *10 - 4.2% (2.76.1%).
olizer, SM slow metabolizer, PM poor metabolizer. Expected
genotype frequencies were calculated using the Hardy-Weinberg The allelic frequency of gene duplication of active wild-
equation from allele frequencies. CYP2C9*1b represents wild type type allele *12 was 1.7% (0.83.2%) and of allele *22
carrying the intron-2 T>C mutation at 73 bp downstream of exon with slightly decreased activity 0.5% (0.11.5%). The
2 duplication of the decient allele CYP2D6*4 was
Genotype n % 95% CI Expected not detected in our sample. Of all the subjects, 5.9%
% was identied as CYP2D6 poor metabolizers, whereas
3.4% was addressed to ultra-rapid metabolizers
CYP2C9 (CYP2D6*12/*1; Table 2).
2 active alleles (EM/EM), sum 252 87.0 82.590.6 87.0
*1/*1 91 31.5 26.137.1 33.6
*1/*1b 90 31.0 25.836.7 28.8
*1b/*1b 16 5.5 3.28.8 6.1 CYP1A1
*1/*2 37 12.8 9.117.2 12.2
*1b/*2 16 5.5 3.28.8 5.2 Mutation 3801T>C (m1) forming an MspI restriction
*2/*2 2 0.7 0.02.5 1.1
1 active allele (EM/SM), sum 37 12.7 9.117.2 12.5
site in the 3-anking region was the most frequent
*1/*3 27 9.3 6.213.3 7.8 previously known mutation (Table 3). The African-
*1b/*3 6 2.0 0.84.5 3.3 Black mutation 3205T>C (m3) in the 3-anking region
*2/*3 4 1.4 0.43.5 1.4 was not found. The novel mutation )4335G>A oc-
2 low-active alleles (SM/SM), sum 1 0.3 0.01.9 0.4 curred in 26.0% (22.529.8%) of alleles. The possible
*3/*3 1 0.3 0.01.9 0.4
mutation combinations, i.e., genotypes (Table 4), were
CYP2C19 dened according to the most frequent alleles appearing
2 active alleles (EM/EM), sum 228 78.7 73.583.2 78.0
*1/*1 228 78.7 73.583.2 78.0 in Caucasians as shown by Mrozikiewicz et al. [13].
1 active allele (EM/PM), sum 56 19.3 14.924.3 20.6 Wild-type allele CYP1A1*1A was found in 55.7% (51.5
*1/*2 55 19.0 14.624.0 20.1 59.8%) of all alleles. All 29 individuals with the m2
*1/*3 1 0.3 0.011.9 0.5 mutation had also the m1 mutation. The frequency of
0 active alleles (PM/PM), sum 6 2.0 0.84.5 1.4
*2/*2 5 1.7 0.64.0 1.3
allele CYP1A1*2B was 5.0% (3.47.1%). Allele CY-
*2/*3 1 0.3 0.011.9 0.1 P1A1*2A, carrying only m1, appeared in 4.7% (3.1
6.7%). Frequency of the m4-containing allele, termed
CYP1A1*4, was 2.6% (1.54.2%). The polymorphism
Five subjects (1.7%) were homozygous for the allele *2 in the 5-region )3219C>T was found only in one
and one person (0.3%) carried the combination *2/*3. haplotype, where all other variants corresponded with
Fifty-ve (19.0%) volunteers had genotype *1/*2 and the reference sequence. A frequency of 6.0% (4.28.3%)
one (0.3%) genotype *1/*3 (Table 1). was predicted in the Russian population for this allele
*1B. The novel mutation )4335G>A was observed in
two haplotypes: in the one haplotype, only this mutation
CYP2D6 occurred; in the other haplotype, mutation )4335G>A
was combined with variant )3229G>A. The frequen-
The frequencies of CYP2D6 alleles were: wild-type allele cies of these haplotypes were predicted with 23.1%
*1 - 70.8% (67.074.5%), mutant alleles *3 - 1.0% (19.726.8%) and 2.9% (1.74.7%), respectively.
Variant )3229G>A was found to be strictly linked with 803. All 127 samples rechecked by real-time PCR
mutation at position )4335. showed concordance with results by PCR-RFLP assays.
Homogeneous melting curves were observed for wild-
type and mutant alleles, whereas heterogeneous curves
NAT2 resulted in the case of simultaneous presence of both
alleles (Fig. 3).
Seven of eight tested point mutations were detected and
could be allocated to eight dierent allelic variants. The
most frequent mutation was the 341T>C transition, MDR1
which appeared in 41.7%, whereas the 111T>C variant
was found only in 0.3% of alleles. No case of the specic The allele and genotype frequencies of MDR1 gene are
African-Black 191G>A mutation was found. One given in Table 6. Homozygous carriers of wild-type
hundred and twenty-two subjects (42.0%) carried one or allele 2677G in exon 21 were found to be 30.3% of all
two alleles encoding fast acetylation (*4 and *12 [36]) participants. No carrier of homozygous 2677A was
and should provided fast-acetylation genotype observed. Homozygosity for mutant allele 3435T in exon
(Table 5). The most common genotypes, coding slow 26 was observed in 30.0% of the sample. Genotype
acetylation were NAT*5B/*6A (24.6%) and *5B/*5B frequencies as combinations of the two frequent poly-
(12.8%). Hybridization probes assay was validated for morphisms in exons 21 and 26 are shown in Table 6 for
the detection of mutations at positions 111, 341, 590 and 271 individuals, who did not carry the nucleotide A at
308
Table 6 Allele, genotype and haplotype frequencies of MDR1 exon- homozygous for nucleotides dierent from reference sequence;
21 G2677T/A and exon-26 C3435T in 290 Russians. Notice that haplotypes coding: rst letter nucleotide at position 2677, second
genotypes coding: 1 homozygous for reference sequence (rst digit letter nucleotide at position 3435, 1 reference sequence, 2
position 2677, second digit position 3435), 2 heterozygous, 3 nucleotide dierent from reference sequence
Observed Expected, %
% 95% CI
experiencing bleeding complications [37]. Further major (except in the case of allele *2 duplication), which has
drugs metabolized by CYP2C9 are phenytoin, oral been shown to have only a slightly lower activity than
hypoglycemic drugs such as tolbutamide [38], angio- allele *1 [3]. In the case of allele duplication, the dis-
tensin receptor antagonists such as losartan, and a crimination of duplicated alleles*22 and *42is
number of nonsteroidal anti-inammatory drugs [39] clinically important to avoid misclassication of the *4
(reviewed in Miners et al. [40] and Lee et al. [41]). Re- duplication as an ultrarapid allele. The frequencies of
cently, the rst recommendations on a CYP2C9-geno- the alleles *9 and *17 were relatively low in previous
type dependent dose adaptation were published [1]. studies of Caucasians [3]; hence, we did not include these
The results of allelic frequency of CYP2C9*2 and and rarer alleles, such as *8, *11, *12, *14, or *15 in this
CYP2C9*3 in a Russian sample are comparable with study.
those obtained in large studies of the Swedish (frequency The mutation spectrum of CYP2D6 in our study was
of 2C9*210.7%and of 2C9*37.4%[42]) and similar to that of other European populations. The fre-
Turkish (frequency of 2C9*210.6%and of 2C9*3 quency of gene duplication alleles (*12 and *22) in
10.0%[8]) populations. In contrast, lower frequencies Russians (2.2%) was not signicantly dierent from
of mutant alleles have been described in the Japanese those in Germans (2.0% [3]), but tended to be higher
(0% of CYP2C9* 2 and 1.8% of CYP2C9*3, [9]), Han than in the Swedish population (1.0% [4]). The fre-
Chinese (0% and 2.6%, respectively) and Taiwanese quency of gene duplications increases from north to
(0% and 1.7%, respectively [10]) populations. The novel south and amounts to 6% in the Turkish population [6],
polymorphism T>C in intron 2 occurred in 10.2% (7.8 to 29% in Ethiopians [5] and to 21% in Saudi Arabians
12.9%) of alleles. Comparative data of other popula- [7]. Conversely, the proportion of poor metabolizers
tions do not exist yet. increases from south to north and arrives at 7.2% in
Caucasians of German origin [3]. The proportion of
poor, intermediate (carriers of one active allele) and
Cytochrome P4502C19 extensive metabolizers in the Russian sample was similar
to that in other European populations.
Albeit CYP2C19 metabolizes a small number of drugs,
there are some clinically important issues. CYP2C19 is
involved in the oxidative metabolism of proton-pump Cytochrome P4501A1
inhibitors such as omeprazole [43]. Allele CYP2C19*2
was found with a frequency of 11.4% (8.914.3%) in The CYP1A1 gene encodes the aryl hydrocarbon
Russians. A similar frequency was described for German hydroxylase which is responsible for the oxidative
and Turkish populations [6] (15.9% and 12.1%, metabolism of carcinogens such as benzo(a)pyrene [47].
respectively), whereas a high incidence of 35% was de- CYP1A1 polymorphisms were reported to be associated
tected in the Far East [9]. The frequency of the with enhanced risk of lung cancer; however, data are
CYP2C19*3 allele in our sample was 0.3% (0.01.2%), conicting [12, 48]. The frequencies of CYP1A1 muta-
which is comparable with German and Turkish samples tions m1 and m2 in the 290 Russians tended to be higher
(0.15% and 0.4%) and much rarer than in Japa- than in the German population (n=880): m1
nese11% [9]. The frequency of poor metabolizers (3801T>C) was found in 9.7% of Russians and in 7.7%
varies considerably among populations. They are rela- of Germans [12]; m2 (2455A>G) occurred in 5.0% of
tively rare in the Turkish and German populations [6], in Russians and 2.7% of Germans, whereas the frequency
Caucasians of European descent [11] and black Tanza- of m4 (2453C>A) was 2.6% in Russians and 3.0% in
nians [44] (1.0, 4.3, 2.1, and 1.5%, respectively), and Germans. This trend may reect a gradient to the Far
quite frequent in people of Asiatic origin13.8% in the Eastern high frequencies of m1 and m2. The frequencies
Chinese [45] and 23.6% in the Japanese [9]. Our study of the CYP1A1 alleles CYP1A1*2A and CYP1A1*2B
showed that the frequency of poor metabolizers in were 4.7% (3.16.7%) and 5% (3.47.1%), which is
Russians (2.0%) is similar to those of other Caucasians. similar to those of the Polish population4.5% and
4.3% [13], respectively. The frequency of the novel
)4335G>A variant was 26.0%, the corresponding data
Cytochrome P4502D6 of other populations are not present.
(NAT2*5A, B, C) and 857G>A (NAT2*7B). In Cau- Table 7 Haplotype frequencies of MDR1 exon-21 G2677T/A and
casians and Africans, the frequencies of alleles *5 are exon-26 C3435T in 290 Russians
high and the frequency of allele *7 is low, whereas it is Genotype Haplotype analysis ofMDR1a
just opposite in the Japanese, Chinese and other Far
Eastern populations. The frequency of allele *6 in the Haplotype pair n % 95% CI
Russian sample (31.8%) was similar to that in other
11 GC/GC (11/11) 53 19.5 15.024.8
Caucasians [16, 49]; whereas, in Oriental populations, 12 GC/GT (11/12) 31 11.4 7.915.8
the frequencies were lower, 2030% [18, 50]. The dif- 13 GT/GT (12/12) 4 1.5 0.43.7
ference in the incidence of the slow acetylator phenotype 21 GC/TC (11/21) 1 0.4 0.02.0
between Caucasians and Asian populations is thus 22 GC/TTb (11/22) 98 36.2 30.442.2
mostly the result of the low incidence of the NAT2*5 23 GT/TT (12/22) 31 11.4 7.915.8
31 TC/TC (21/21) 1 0.4 0.02.0
alleles in Asians. Asian populations show a higher fre- 32 TC/TT (21/22) 4 1.5 0.43.7
quency of the wild-type allele NAT2*4 (44 to 79%) than 33 TT/TT (22/22) 48 17.7 13.422.8
other ethnic groups (624%). The frequencies of point a
mutations, alleles and genotypes of NAT2 in the Russian Performed in 271 individuals, i.e., without those carrying a 2677A
allele in exon 21
sample were similar to those in Middle and South b
The alternative haplotype pair GT/TC was calculated to be very
European ethnicities [15, 16, 17]. rare (<1%)
In addition to conventional PCR-RFLP genotyping,
127 samples were analyzed for the NAT2 mutations at
six nucleotide positions by a newly developed method
using LightCycler technology. The results achieved with Statistical methods to calculate the probability of hapl-
these two methods correlated perfectly. The uorescent otypes become of great value when population samples
probes assay is easy, fast, reliable and allows genotyping are concerned. The allelic distribution of the most
to be performed on a large scale. important DMEs in the Russian sample is similar to that
in Middle European populations. Therefore, it may be
expected that the number of drug side eects or lack of
ecacy due to an individuals genetic background is also
P-glycoprotein gene MDR1 similar.
The multidrug-resistance gene (MDR1) encodes the Acknowledgements We thank M. Buchneva, Voronezh, for col-
membrane protein P-glycoprotein, which exports drugs lection of blood samples. The help of O. Landt (Tib Molbiol) in
and other xenobiotics from the inside of endothelial hybridization probes design is gratefully acknowledged. We
cells to the outside. Various polymorphisms in the appreciate critical reading of the manuscript by Dr. G. Laschinski
and Dr. J. Kirchheiner.
human MDR1 gene have been described so far, and the
two studied here correlated with intestinal P-glycopro-
tein expression and oral bioavailability of digoxin [19,
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