SUSHIL SHAKYAWAR CURRENT ADDRESS-

sushil100387@gmail.com Avenida D. Joao II,49-2DT/FT,

4715-303-Braga, Portugal
PHONE- +351 916032215
CITIZENSHIP : INDIAN SKYPE- sushilkumar20
DATE OF BIRTH: 10 MARCH 1987

EDUCATION
Research interest
PhD (Marie Curie fellow) Chemical and Biological Engineering Nov, 2014 current
(SilicoLife Lda and University of Minho, Portugal)
Systems biology

Metabolic
Master in research (MRes)- Computational Biology Sept 2011 Jan 2013 modelling
University of York, UK
Bioinformatics
with 66% (Percentage)
Systems
Bachelor of Technology (B.Tech) - Biotechnology Jul 2006 May 2010 glycomics
Indian Institute of Technology Guwahati
with 7.05/10 (CGPA)
Technical Skills

Python
RESEARCH EXPERIENCE
java

R

Nov 2014 current- Marie Curie PhD fellow at SilicoLife Lda, Portugal
C/C++
Work domain- Glycomics, integration of omics data with genome scale models.
MYSQL

Jan Oct 2014: CIMO fellow at Institute for Molecular Medicine Finland (FIMM),
University of Helsinki Softwares/Tools
Work domain: Machine learning based prediction of drug-target interactions using drug
screening quantitative data
Genome Scale
Metabolic

May Aug, 2012: Master thesis at Institute for Molecular Medicine Finland (FIMM), Modelling
University of Helsinki softwares
Work domain: Analytical interpretation and comparison of different bioactivities from different
COBRA, OptFlux
sources for modeling
CytoScape
to predict unknown drug-target interactions.
Weka

C4.5

Dec April, 2011: Internal Project at University of York
Bioconductor
Work domain: Developing user interface for analyzing Agilents SurePrint Microarray data. packages

Autodock

Mar Aug, 2011: Intern at Indian Institute of Technology Delhi (IITD), India
Work domain: Computational approach in vaccine designing
Additional Skills

Apr 2009-May 2010: Bachelor degree project at IIT Guwahati, India
Work domain: Proteomics, Computational approach for drug target protein identification
Machine
learning

May-July, 2009: Intern at University of Oslo, Norway (Department of Informatics)
Gene
Work domain: Statistical analysis of Histone modification pattern using HTS biological data. expression data
analysis

drug-target
PUBLICATIONS interactions
prediction

Molecular
1. Shakyawar S, Soares S, Rocha I, Carneiro, S (2017) Accessing and interlinking databases in docking
glycobiology. Submitted to Briefings in Bioinformatic.
2. Szwajda A, Gautam P, Karhinen L, Jha SK, Saarela J, Shakyawar S, Turunen L, Yadav B, Tang J, Teaching
Wennerberg K, Aittokallio T. (2015) Systematic Mapping of Kinase Addiction Combinations in
Breast Cancer Cells by Integrating Drug Sensitivity and Selectivity Profiles. Chemistry and
One year
Biology 22(8):1144-55 experience as
3. Pahikkala, T., Airola, A., Pietil, S., Shakyawar, S., Szwajda, A., Tang, J., Aittokallio, T. (2015). tutor for
Toward more realistic drug-target interaction predictions. Briefings in Bioinformatics. 16(2), teaching high
325-37 school Maths.
4. Tang, J., Szwajda A., Shakyawar, S., Xu, T, Hintsanen, P., Wennerberg, K., and Aittokallio, T.
Six months
(2014) Making Sense of Large-Scale Kinase Inhibitor Bioactivity Data Sets: A Comparative and experiences in
Integrative Analysis. Journal of Chemical Information and Modeling, 54 (3), 735743. coaching
5. A Grover, S Shakyawar, P Saudagar, V. K. Dubey, D Sundar. (2012). Epitopic analysis of institutes for
Potential Vaccine Candidate in Leishmania infantum for Development of Human Vaccine. teaching
Letters in Drug Design & Discovery, 9, 698-705. physics.
6. S Shakyawar, A Goyal, V K Dubey (2011). Genome analysis of selected food borne pathogens
Extracurricular
for identification of drug targets, Current Trend in Biotechnology and Pharmacy, 5, 1134-1148.
act.
7. S Shakyawar, A Goyal, V K Dubey (2010) Database of Insilico predicted potential drug target
Chess
proteins in common human pathogens. American Journal of Drug Discovery and Development,
Cricket
1(1):70-74.
Movies
8. S Shakyawar, B K Joshi and D Kumar (2009). SSR repeat dynamics in mitochondrial genomes
of five domestic animal species. Bioinformation, 4(4): 158-163.
Social
Contributions and
FELLOWSHIPS/SCHOLARSHIPS/AWARDS works

Donated blood

Marie-Curie Action Early Stage Researcher (ESR) Fellowship (2014-2017)- SilicoLife Lda
one time in

CIMO fellowship (2014) University of Helsinki Finland (FIMM)
blood bank

Indian State Government Scholarship (2011-2013) MRes (Master of Research) degree at
(India)
University of York UK

General

Merit Cum Mean scholarship (2006-2010) - 4 Years B.Tech program in Biotechnology at IIT
awareness
Guwahati
campaign for
CONFERENCES / WORKSHOPS / SUMMER SCHOOLS parasitic
disease (India)

GlycoPar Workshop IV: 7-9 June, 2017 : Marie Curie GlycoPar Network, GSK Madrid

GlycoPar Workshop III : 12 16 Sept, 2016 Marie Curie GlycoPar Network (LSTM, Liverpool
UK) Other skills

GlycoPar Workshop II: 07-03 Oct, 2015 Marie Curie GlycoPar Network (MHH, Hannover)
Teamwork skills

GlycoBiology Summer School: 23-25 Sept, 2015- Marie Curie GlycoPharm Network (University and capabilities
of Minho)
Good

MPA (Metabolic Pathway Analysis) conference 8-12 June, 2015- University of Minho (Braga) communication

GlycoPar Workshop I : 29 Sept 03 Oct, 2014 Marie Curie GlycoPar Network (IMM, Lisbon) skills

PASSPORT DETAILS
Passport Number: N5924183
Place of Issue: Bhopal-MP, India