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Keywords: Remote estimation of leaf nitrogen (N) or pigments through hyperspectral reectance oers an opportunity to
General purpose model non-destructively diagnose plant N status. Two sweet sorghum (Sorghum bicolor [L.] Moench) cultivars (Top 76-6
Near-infrared region and Dale) were grown with 0, 56, 112, 168, and 224 kg N ha1 in 2009 and 2010. Reectance measurements
Simple-ratio model were coupled with plant height, main-stem node number, leaf N concentration, and total chlorophyll content to
Validation
establish the relationship of these traits with canopy reectance. Canopy reectance was most sensitive to N
Visible region
status in the visible region, specically near green (595 nm) and red (701 nm) wavebands. Simple-ratio spectral
models comprised of visible wavebands or wavebands from the visible and near infrared region outperformed
models developed using only the most sensitive single-waveband. Based on the cross-validation of spectral
models between data from two years and two cultivars, the simple-ratio models comprising the reectance (R)
ratios of 595 nm vs. 1676 nm and 595 nm vs. 508 nm predicted leaf N concentration and chlorophyll content
with the greatest accuracy (highest r2 and lowest relative error, RE). These simple-ratio models were used to
develop general-purpose spectral models to derive coecients to estimate leaf N concentration (-66.63 R595/
R1676 + 34.14; r2 0.52; RE 16.8%) and chlorophyll content (-49.12 R595/R508 + 107.47; R2 0.64; RE 17%).
The identied spectral models can be used to assess growth, diagnose sweet sorghum N status and may be useful
to make N management decisions for site-specic fertilizer applications.
Corresponding author.
Corresponding author at: Adaptive Cropping Systems Laboratory, United States Department of Agriculture Agricultural Research Service, Beltsville, MD 20705, USA.
E-mail addresses: singh.shardendu@gmail.com (S.K. Singh), fritschif@missouri.edu (F.B. Fritschi).
http://dx.doi.org/10.1016/j.fcr.2017.04.009
Received 16 December 2016; Received in revised form 14 April 2017; Accepted 15 April 2017
Available online 26 April 2017
0378-4290/ 2017 Elsevier B.V. All rights reserved.
S.K. Singh et al. Field Crops Research 209 (2017) 4757
growth and yield (Gray et al., 2010; Ma et al., 2001; Peuelas and numbers, and (c) to determine eects of N availability on sweet
Filella, 1998; Ryu et al., 2011; Yi et al., 2007; Zhao et al., 2005; Zhao sorghum growth and development, leaf N concentration and total
et al., 2007). The N reectance index developed by Bausch and Duke chlorophyll (TChl) content.
(1996) to monitor corn N status also is based on canopy reectance in
the visible (green, 520600 nm) and NIR (760900 nm) regions. In a 2. Materials and methods
subsequent study, Bausch and Diker (2001) used the N reectance
index to detect in-season corn N deciency and make N fertilizer 2.1. Crop management and N treatments
application decisions. Using this approach, they were able to reduce
fertilizer application by 39.2 kg N ha1 in a farmers eld without The experiment was conducted at the Bradford Research Center
reducing the corn grain yield. These results indicated that a canopy near Columbia, MO, USA (38 53N, 92 12 W) in 2009 and 2010 on a
reectance index derived from one experimental setting can be Mexico Silt Loam (ne, smectitic, mesic, Vertic Epiaqualf) soil. The eld
suciently robust to be applied successfully on a dierent site and was tilled with a disk to a depth of approximately 0.15 m before
year for N-management decisions, thus illustrating the potential for planting. On 7 June 2009 and 18 June 2010, sweet sorghum cultivars
broader applicability of indices developed on a single or small numbers Top 76-6 and Dale were sown 0.02 m deep, in rows 0.76 m apart to
of eld environments. achieve an approximate population of 208,000 plant ha1. The main
Spectral reectance models may be comprised of one or more plots consisted of N treatments of 0, 56, 112, 168, and 224 kg N ha1
wavebands/spectral features as single-waveband, simple-ratios or in- (hereafter referred to as 0N, 56N, 112N, 168N and 224N) and were
dices to determine plant N status or chlorophyll concentration arranged in a randomized complete block design with four replications,
(Chappelle et al., 1992; Gray et al., 2010; Zhao et al., 2007; Zhao and subplots consisted of sweet sorghum cultivars that were arranged as
et al., 2005). Often these spectral models are composed of distinct strips within each replication. Main plots were 12 rows wide and 15 m
wavebands (e.g. in the visible and/or NIR regions) of the electromag- long, and subplots were six rows wide and 15 m long. SuperU urea
netic spectrum. Daughtry et al. (2000) found that spectral indices that (Koch Agronomic Services, Wichita, KS) was broadcast as applications
combined reectance at visible and NIR regions of the spectrum are of 56 kg ha1 (56N) and 112 kg ha1 (112N, 168N, and 224N) at
sensitive to both leaf spectral characteristics and background reec- planting, and supplemented with 56 kg ha1 or 112 kg ha1 for 168N
tance. Thus, an integrated approach to develop hyperspectral reec- and 224N approximately two weeks after emergence. The same eld
tance models using features from two distinct wavebands oers better and plot design were used in both study years.
precision and accuracy for the prediction of plant growth, leaf N, or For each growing season, rainfall and temperature data from
pigment concentration. Due to the high degree of collinearity among planting to the end of measurements were obtained from a weather
waveband reectance from the plant canopy, use of fewer wavebands station located at the Bradford Research Center. Total in-season rainfall
to construct an empirical model is encouraged (Gardner et al., 1985). for 2009 and 2010 was 288 mm and 514 mm, respectively. The average
Models with fewer wavebands usually oer the advantage of being growing season temperature ( standard deviation) in 2009 was
straightforward and rapid compared to the more complex models with 28.8 3.5 C and in 2010 was 22.7 4.6 C. Long-term (between
many spectral features. Once the sensitive wavebands are identied, a 1971 and 2000) records of rainfall (395 mm) and temperature
relatively simple spectroradiometer that measures those particular (22.3 3.3 C) in this region for the same period were obtained from
wavebands can instantaneously calculate the desired plant trait by the High Plains Regional Climate Center (HPRCC) website (http://
using appropriate coecients derived from the reectance model www.hprcc.unl.edu; Columbia WSO AP, MO, USA, Station # 231791).
(Peuelas and Filella, 1998).
Sweet sorghum has gained much interest as a potential biofuel crop 2.2. Measurements
to minimize the dependence on maize (Zea mays L.) to produce ethanol
(Maw et al., 2016; Putnam et al., 1991; Rooney et al., 2007; Serro Plant samplings for determination of N concentration and chlor-
et al., 2012). Although, N fertilizer application and management is ophyll content and canopy reectance measurements were conducted
crucial in both crops, studies describing the impact of N deciency and twice each year. The rst measurements were conducted between 50
its relation with canopy reectance under eld condition in sweet and 55 days after planting (DAP) in both years. The second measure-
sorghum are scarce compared to maize (Blackmer et al., 1994; ments were conducted 70 DAP in 2009 and 78 DAP in 2010. In 2010,
Daughtry et al., 2000; Ma et al., 1996; Zhao et al., 2005). Zhao et al. plant height (PH) and main stem node numbers (MSN) for four
(2005) and Foster et al. (2016) found that plant tissue N or chlorophyll randomly selected plants, and canopy reectance were also measured
correlated with spectral reectance measured at leaf or canopy levels in ten times in each subplot between 40 and 120 DAP. The average
grain and high-biomass sorghum, respectively. Mani et al. (1991) number of leaves during the rst measurement was approx. 56 in 0N
reported that canopy reectance of grain sorghum was highly sensitive and 78 in the N-treated plants. At the second measurement, there were
to growth and nutrient application around 55 and 65 days after 89 leaves in the 0N and 1013 leaves in the N-treated plants. Plant
planting. Further, Serro et al. (2012) found that leaf N concentration height was measured from ground to the apex of the plant. The stem
was the best indicator of sugar content in sweet sorghum. Foster et al. elongation rate (SER) and node addition rate (NAR) were calculated as
(2016), reported that a normalized N index constituting reectance at maximum plant height or node number divided by the number of days
wavebands in the blue region of the spectrum (400 and 510 nm) was required to reach the maximum.
strongly correlated with the total N concentration. These studies
indicate the presence of empirical relationships between sweet sorghum 2.3. Determination of leaf N concentration
N status and canopy reectance properties that can be utilized to
identify sensitive wavebands to construct spectral models. In association with the canopy spectral reectance measurements,
A crops N fertilizer requirement is often determined based on the plants were harvested from one square meter area in each subplot, and
laboratory analyses of soil and/or plant N status, but sample collection leaves and stems were dried separately in a forced air-drier at 55 C
and analyses can be time-consuming and expensive. Therefore, an until weights stabilized. Dried leaves were ground using a Wiley Mill
empirical model developed using canopy spectral reectance would be (Thomas Scientic, NJ, USA) to pass a 2.0 mm screen, and subsequently
useful for a quick and non-destructive assessment of sweet sorghum N ground a second time with a UDY Cyclone Mill (UDY Corp., Fort
status. Thus, the objectives of this study were (a) to identify spectral Collins, CO) to pass a 1.0 mm screen. Ground materials were homo-
features most sensitive to N deciency, (b) to develop simple spectral genized, and total N concentration was determined by dry combustion
models to quantify crop N status, TChl content, plant height and node with a LECO TruSpec N Elemental Determinator (LECO Corp., MI, USA)
48
S.K. Singh et al. Field Crops Research 209 (2017) 4757
according to AOAC (2006). or TChl content. The PROC REG procedure of SAS (v. 9.2, SAS Institute
Inc., Cary, NC USA) was used for linear regression to relate the canopy
2.4. Determination of leaf total chlorophyll content spectral reectance (independent variable) to N concentration or TChl
content (dependent variables). The reectance data from two sampling
Total chlorophyll (TChl) content was determined from ve 0.68 cm2 dates in each year were pooled to establish the relationships between
leaf disks excised from the uppermost, fully expanded leaf from ve reectance and N concentration or TChl content. To determine the
plants of each subplot. Leaf disks were placed into vials containing 5 mL simple ratios, the reectance values of the most sensitive wavebands
of ethanol (95%, v/v) and incubated at room temperature in the dark with the greatest r2 were used as the numerator and the reectance at
for 24 h. The absorbance of the supernatant was measured at 664 and each of all other wavebands throughout the whole spectrum as the
648 nm using a Genesys 10uv spectrophotometer (Thermo Electron denominator. The resulting ratio values of reectance were then
Corporation, Madison, WI). Total chlorophyll was estimated using the regressed with the N concentration or TChl content in a similar manner
equations of Lichtenthaler (1987): Total chlorophyll (g ml1) = as for the single-waveband to obtain the simple-ratio. Three simple
(5.24 A664) + (22.24 A648), where A664 and A648 are the absor- ratios with the greatest r2 were selected for N concentration as well as
bance values of the supernatant at 664 and 648 nm, respectively. The for TChl content. Similarly, a simple ratio with the highest r2 was also
values were expressed in g cm2 by using the equation: TChl content developed by linear regression of the reectance with plant height and
(g cm2) = (Total chlorophyll, g ml1 5)/3.40, where ve is the node number.
amount of ethanol (solvent, ml) and 3.40 is the leaf area (cm2) of the Additionally, a pre-existing chlorophyll index and a simple-ratio
ve leaf disks. model showing good predictive capabilities in previous studies were
selected for evaluation in the present study (Gray et al., 2010; Zhao
2.5. Acquisition of canopy spectral reectance et al., 2005). The total canopy chlorophyll content index (CHLindex)
calculated as the ratio of the area under the curve in the 840870 nm
Canopy spectral reectance was measured on sunny days between regions and 720730 nm regions [ R840-870/ R720-730] (Gitelson et al.,
1000 and 1400 h in each subplot using an ASD FieldSpec, FR spectro- 2005; Gray et al., 2010) was determined. Since Zhao et al. (2005) found
radiometer (Analytical Spectral Devices Inc., Boulder, CO, USA) with a a good correlation with N concentration or chlorophyll content in
25 eld of view. Three measurements were taken within the middle sorghum, the simple ratio of the reectance between 1075 nm and
rows near the center of each subplot and averaged. Reectance was 735 nm (R1075/R735) was also used.
measured at wavelengths ranging from 350 to 1800 nm with a 1-nm To determine models with consistent performance across year and
interval. However, the reectance between 1350 nm and 1450 nm was cultivar, the reectance models for N concentration and TChl content
excluded from the analysis due to the strong interference of water derived using single-waveband or simple ratios from the data set of
absorption bands in this region (Gausman et al., 1984), and the spectral 2009 were validated on the data set of 2010 and vice-versa. The r2, root
domains of 4001350 and 14511800 nm were used for analyses. To means squared error (RMSE) and the percent relative error (RE) were
measure the canopy reectance, the optical head was held approxi- determined and used as measures of model performance. The RMSE and
mately 1 m above the canopy at the nadir-viewing (nadir position) RE evaluate the accuracy (the relative closeness of the predictions to
geometry at each sampling interval. After optimization of the ASD the actual values) of the models and model validation as used in other
instrument, reectance measurement of the device was set to 100% by studies (Blackburn, 2007; Ryu et al., 2011; Yi et al., 2007) and
measuring the reectance of a Spectralon reference panel (white computed as:
reference panel 25.4 25.4 cm calibrated as 99% reective). The
n
white reference was measured approximately every 510 min to check i =1 (yi yi)2 100 RMSE
RMSE = RE = y
the instrument stability for 100% reectance. The white reference n
49
S.K. Singh et al. Field Crops Research 209 (2017) 4757
Table 1
Inuence of nitrogen (N) treatment on sweet sorghum cultivar (Top 76-6 and Dale) plant height (PH) and number of main stem nodes (MSN) 118 days after planting in 2010. Stem
elongation rate (SER) and node addition rate (NAR) were determined based on days after planting when maximum plant height and node number were reached. Data points represent
means of four replications. Analysis of variance (ANOVA) results are presented as P-values.
N treatment (Kg ha1) PH (m) MSN (no.) SER (cm d1 plant1) NAR (d1 plant1)
Top 76-6 Dale Mean Top 76-6 Dale Mean Top 76-6 Dale Mean Top 76-6 Dale Mean
c c b b b d c c c c
0 1.86c 2.53 2.19 15.3 12.5 13.9 1.578 2.140 1.859 0.129 0.124 0.127d
56 2.65b 2.84b 2.75b 16.3a 13.3a 14.8a 2.246c 2.682b 2.464b 0.138b 0.142bc 0.140c
112 2.91a 2.98ab 2.94a 16.6a 13.1ab 14.9a 2.468bc 2.795b 2.631b 0.141ab 0.147ab 0.144bc
168 3.06a 3.11a 3.08a 16.6a 13.5a 15.1a 2.590ab 3.225a 2.907a 0.141ab 0.161ab 0.151ab
224 3.04a 3.01ab 3.03a 16.6a 13.0ab 14.8a 2.739a 3.476a 3.107a 0.145a 0.167a 0.156a
Mean 2.71B 2.89A 16.3A 13.1B 2.324B 2.863A 0.139A 0.148A
ANOVA P-values
Cultivar 0.0340 0.0003 0.0026 0.0398
N < 0.0001 0.0042 < 0.0001 0.0032
Cultivar N < 0.0001 0.4278 0.2446 0.0351
Means in a column followed by the same lowercase letter and means in a row followed by the same uppercase letter are not signicantly dierent at P = 0.05.
concentration was 34.8%, 25.1%, and 13.7% lower in the 0N, 56N, and
112N treatments, respectively. The mean TChl content across cultivars
and years ranged between 19.0 and 34.8 g cm2 at 0N and 224N
treatments, respectively. Compared to the 224N treatment, across
cultivar and year mean TChl content was 45.4%, 31.9%, and 21.8%
lower at 0N, 56N, and 112N, respectively.
50
S.K. Singh et al. Field Crops Research 209 (2017) 4757
Table 2
Inuence of nitrogen (N) treatment on sweet sorghum leaf N concentration (Leaf N) and total chlorophyll (TChl) content in 2009 and 2010. Analysis of variance (ANOVA) results are
presented as P-values.
c c c d
0 16.0c 13.6 14.8 20.5 17.6 19.0d
56 18.7bc 15.2c 17.0c 25.2b 22.2c 23.7c
112 20.8ab 18.5b 19.6b 25.6b 28.8b 27.2b
168 22.1ab 20.9a 21.5ab 31.6a 33.6a 32.6a
224 23.7a 21.7a 22.7a 35.5a 34.2a 34.8a
Mean 20.3A 18.0B 27.7A 27.3A
Values are means of 16 measurements averaged across two sweet sorghum cultivars Top 76-6 and Dale and two samplings obtained at separate days after planting (DAP) in a given
year of study.
Means in a column followed by the same lowercase letter and means in a row followed by the same uppercase letter are not signicantly dierent at P = 0.05.
However, compared to the models developed from single-wavebands, 3.6. Evaluation of selected and validated models by cross-validation for
the simple-ratio models showed improved precision and accuracy as cultivars
measured by r2 and RE (Tables 3 and 4, Fig. 4). The best simple-ratio
spectral model exhibiting the highest r2 and the lowest RMSE and RE The two best spectral models (the model with the highest r2 and
was selected for leaf N concentration, R595/R1676 (r2 0.79, RE 10.5%, lowest RE values from the development phase and the model with the
Table 3) and TChl content, R595/R508 (r2 0.73, RE 15.1%, Table 4). lowest RE value from the validation phase) each for leaf N concentra-
Examination of the pre-existing chlorophyll index (CHLindex) or ratio tion and TChl content were further evaluated to determine their
(R1075/R735) revealed that they did not perform better than the best accuracies by cross-validating between cultivars across years
simple-ratio models identied in the current study (Tables 3 and 4). (Table 6). For the prediction of leaf N concentration, the r2 and RE
The relationships of the canopy spectral reectance with PH and values ranged from 0.42 to 0.63 and from 14.9 to 18.6%, respectively.
MSN also showed the greatest r2 in the visible spectrum near the blue For the prediction of TChl content, the r2 and RE values ranged from
region and both centered at 440 nm (Fig. 5a). The reectance at 440 nm 0.52 to 0.67 and from 16.9 to 20.1%, respectively. The cross-validation
was used as the numerator to develop simple-ratio spectral models for results showed that the models selected based on the development
PH and MSN across cultivars (Fig. 5bc). The wavebands associated phase R595/R1676 and R595/R508 had the best accuracies (the highest r2
with the simple-ratio models diered between PH and MSN. The and the lowest RE) for the prediction of leaf N concentrations and TChl
simple-ratios R440/R525 and R440/R1525 showed the best predictive contents (Table 6, Fig. 7). Thus, these simple-ratio models were chosen
capabilities (r2 0.49) for PH or MSN, respectively. as nal models for the development of general purpose models (GPMs)
for leaf N concentration and TChl content.
For the development of GPMs, all data were pooled (not averaged)
3.5. Validation of the single-waveband and simple-ratio models for leaf N across years and cultivars and the simple-ratios R595/R1676 for leaf N
and TChl between years concentration and R595/R508 for TChl content were derived from the
reectance data. The resulting simple-ratio values were then regressed
The spectral models, as shown in Tables 3 and 4 for N concentration with N concentration or TChl content to obtain the coecients for each
and TChl content, respectively, developed from 2009 data sets were trait. These coecients were used to develop the universal equations
validated using 2010 reectance data sets, and vice versa (Table 5). for the GPMs to estimate leaf N concentrations or TChl contents of
Validation of a spectral model developed in one year for the respective sweet sorghum cultivars across years (Fig. 8). The actual and predicted
data set in the other year resulted in the same, r2 values as for the leaf N concentrations and TChl contents from the GPMs closely aligned
model-development phase, but RMSE and RE values diered. For with the 1:1 line (Fig. 8). The equation derived to estimate sweet
instance, r2, RMSE and RE values for the reectance model R595 for sorghum leaf N concentration was 66.63 R595/R1676 + 34.14 (r2
leaf N concentration of Top 76-6 in 2009 were 0.74, 2.29 and 11.7%, 0.52; RE 16.8%) and the equation to estimate TChl content was
respectively (Table 3). When this data set was validated using the R595 49.12 R595/R508 + 107.47 (R2 0.64; RE 17%).
model from 2010, the r2, RMSE, and RE values were 0.74, 4.24 and
21.7, respectively (Table 5). The RE values resulting from model 4. Discussion
validation were greater (Table 5) than those from the development
phase for a given data set (Tables 3, 4). However, since RE can be used 4.1. Eect of N deciency on plant growth and leaf N concentration and
to compare the accuracy (lower is better) of dierent models, results TChl content
from the validation phase were used to select the best model based on
the RE (lowest) for leaf N concentration (R595/R1240) and TChl content The observed decrease in plant height and leaf number under N
(R701/R1348) (Table 5, Fig. 6). Examination of the selected models deciency was accompanied by lower tissue N concentration and TChl
revealed that the model for leaf N concentration tended to under- content, and is likely a consequence of reduced carbon assimilation
estimate higher values while the model for TChl content tended to (Singh et al., 2014; Zhao et al., 2005). While both node number and
overestimate lower values (Fig. 6). internode length were inuenced by N treatment, the impact of low N
availability on the internode length was more pronounced than on node
51
S.K. Singh et al.
52
Table 3
Model development results from linear regression analyses between leaf nitrogen (N) concentration and spectral models with the highest coecient of determination (r2) derived using a single-waveband, a simple ratio or a preexisting index/ratio.
Data from four replications of each of ve N treatments across two sampling dates for each cultivar in a given year were used (i.e. n = 40). The slope (b) and the intercept (c) are provided. A typical model can be constructed using the equation:
spectral model b + c, where spectral model represent the reectance at a single wavelength, reectance ratio between two wavelengths (simple ratio) or the index. CHLindex refers to the chlorophyll index. RMSE, root mean square error (g kg1);
RE, relative error (%).
2 2 2
b c r RMSE RE b c r RMSE RE b c r RMSE RE b c r2 RMSE RE
R595 251.23 31.33 0.74 2.29 11.7 145.81 25.27 0.37 3.46 19.5 293.93 34.56 0.52 3.67 17.6 155.23 25.87 0.34 3.16 17.0
R701 181.74 31.43 0.72 2.35 12.0 108.74 25.58 0.39 3.40 19.2 214.84 34.87 0.50 3.72 17.8 119.68 26.41 0.37 3.08 16.6
R595/R518 61.90 89.64 0.62 2.74 14.0 51.63 76.61 0.73 2.28 12.8 67.32 96.86 0.44 3.94 18.9 54.77 79.48 0.59 2.49 13.4
R595/R1240 112.65 33.73 0.75 2.24 11.5 89.42 28.82 0.56 2.89 16.3 130.00 36.91 0.60 3.34 16.0 82.18 28.18 0.50 2.76 14.9
R595/R1676 73.18 36.94 0.79 2.06 10.5 73.79 34.20 0.64 2.62 14.7 85.13 40.54 0.60 3.34 16.0 62.92 31.48 0.57 2.54 13.7
R701/R518 31.38 69.15 0.36 3.58 18.3 35.66 74.61 0.72 2.31 13.0 24.53 59.72 0.14 4.90 23.5 36.58 75.47 0.56 2.57 13.8
R701/R1240 80.43 33.67 0.72 2.35 12.1 66.60 29.26 0.59 2.79 15.7 95.11 37.29 0.58 3.41 16.4 62.23 28.72 0.53 2.66 14.4
R701/R1676 53.18 37.17 0.77 2.15 11.0 55.37 34.99 0.68 2.46 13.9 62.09 40.95 0.57 3.46 16.6 47.92 32.30 0.61 2.41 13.0
Pre-existing index/ratio
CHLIndex 9.96 1.67 0.67 2.58 13.2 7.62 1.06 0.53 2.98 16.8 11.06 2.77 0.54 3.59 17.2 6.86 3.02 0.47 2.81 15.2
R1075/R735 27.34 20.80 0.66 2.60 13.3 20.06 12.78 0.50 3.10 17.5 29.13 22.27 0.53 3.61 17.3 19.13 10.87 0.50 2.75 14.8
Field Crops Research 209 (2017) 4757
S.K. Singh et al. Field Crops Research 209 (2017) 4757
Model development results from linear regression analyses between total chlorophyll content (TChl) and spectral models with the highest coecient of determination (r2) derived using a single-waveband, a simple ratio or a preexisting index/ratio.
23.6
24.1
15.5
21.9
21.0
16.9
21.0
19.9
19.2
18.5
RE
RMSE
7.00
7.14
4.58
6.48
6.23
4.99
6.21
5.90
5.67
5.48
0.23
0.19
0.67
0.34
0.39
0.61
0.39
0.45
0.49
0.52
r2
31.17
110.37
2.18
42.12
40.83
48.08
53.46
66.82
50.08
56.08
c
184.45
230.30
122.61
50.91
91.78
11.47
97.47
73.02
14.25
39.82
2010
Fig. 3. Results from linear regressions of leaf nitrogen concentration or total chlorophyll
21.1
21.5
19.1
17.0
16.1
20.4
16.3
15.3
16.4
17.2
RE
content of sweet sorghum cultivars Top 76-6 and Dale with the canopy reectance ratio of
(a-b) R701/R and (c-d) R595/R. Curves reveal the highest coecient of determination
(r2) used to identify the simple-ratios with the greatest r2.The symbol represent any
RMSE
5.95
6.05
5.36
4.81
4.54
5.73
4.59
4.30
4.62
4.84
reectance between 400 and 1800 nm. Data are means of harvests and years.
0.66
0.63
r2
and Lal, 2012; Singh et al., 2015). Leaf N concentrations and TChl
contents observed for 168N and 224N treatments were comparable to
10.93
41.25
55.75
61.35
76.04
57.67
63.82
174.29
112.52
133.06
53.28
13.69
86.22
et al., 1993; Zhao et al., 2005). The PH, MSN, plant growth rates, and
18.19
46.74
2009
Dale
19.0
19.2
RE
5.70
5.80
3.75
5.03
5.07
3.86
4.83
4.82
4.73
4.78
0.57
0.56
a pattern typical for green vegetation (Fig. 2a). The evaluation of the
reectance spectra based on both percent sensitivity and r2 (Fig. 2b-e)
29.35
4.13
edges of the green (595 nm) and red (701 nm) regions. The observed
c
130.95
96.46
11.15
99.11
73.93
13.42
35.90
2002; Chappelle et al., 1992). Plant height and MSN also showed a
18.8
19.0
15.8
16.5
16.3
16.0
16.2
15.8
15.7
15.3
5.03
5.08
4.24
4.42
4.38
4.29
4.35
4.23
4.22
4.11
wavebands and often improve the precision and accuracy (RMSE or RE)
of the prediction (Chappelle et al., 1992; Singh et al., 2013; Zhao et al.,
2005). For a given best single-waveband (595 nm and 701 nm), one of
0.50
0.49
0.64
0.61
0.62
0.63
0.62
0.64
0.64
0.66
r2
the visible region (e.g. R452, R508 and R518) while the other two
6.62
42.55
42.11
49.30
52.44
69.58
49.91
53.69
See Table 3 for additional information.
wavebands were selected from the NIR region (e.g. R1240, R1348,
c
R1676, and R1790). Wavebands in the NIR region have been shown to
respond to the changes in leaf structural properties and leaf layers
240.96
326.32
138.66
102.09
Top 76-6
51.53
84.23
12.20
63.35
Pre-existing index/ratio
R701/R1348
R701/R1790
R1075/R735
R595/R508
R701/R452
CHLIndex
R701
R595
53
S.K. Singh et al. Field Crops Research 209 (2017) 4757
Fig. 4. Example relationships between sweet sorghum (cultivar Top 76-6) leaf nitrogen (N) concentration or total chlorophyll (TChl) content with canopy reectance for a given single-
waveband or simple-ratio for years 2009 (lled symbol, solid line) and 2010 (unlled symbol, dashed line). Data are pooled over two sampling dates each year (n = 40). Coecients of
determination (r2) of linear regression analyses are shown. The RE represents the percent (%) relative error, and R represents the canopy reectance at the given wavelength.
54
S.K. Singh et al. Field Crops Research 209 (2017) 4757
Fig. 6. Actual versus predicted leaf nitrogen (N) concentration (a) and total chlorophyll
(TChl) content (b) during the validation phase of sweet sorghum cultivars. The
validations of 2010 model on 2009 reectance data are shown. The RE represents the
percent (%) relative error. Dotted lines represent the 1:1 lines.
Table 5
Results of model validation showing the coecient of determination (r2), root means squared error (RMSE, g kg1 or g cm2) and relative error (RE, %). The spectral models, as shown
in Tables 1 and 2 for nitrogen concentration (N) and total chlorophyll content (TChl), respectively, developed in 2009 were validated using 2010 reectance data, and vice versa.
Model (year) Data (year) Model (N) N (g kg1) Model (TChl) TChl (g cm2)
2009 2010 R595 0.37 6.30 35.5 0.34 4.54 24.5 R595 0.36 7.89 31.8 0.19 9.74 32.9
2010 2009 0.74 4.24 21.7 0.52 5.66 27.1 0.49 5.33 19.9 0.42 6.72 23.9
2009 2010 R701 0.39 6.20 34.9 0.37 4.48 24.2 R701 0.38 7.81 31.4 0.23 9.61 32.5
2010 2009 0.72 4.24 21.7 0.50 5.65 27.1 0.50 5.27 19.7 0.44 6.60 23.4
2009 2010 R595/R518 0.73 5.57 31.4 0.59 4.96 26.8 R595/R508 0.73 6.77 27.2 0.67 7.03 23.7
2010 2009 0.62 4.49 23.0 0.44 6.01 28.8 0.64 4.73 17.6 0.54 5.53 19.6
2009 2010 R595/R1240 0.56 6.39 36.0 0.50 4.91 26.5 R595/R1348 0.52 7.79 31.4 0.34 8.96 30.3
2010 2009 0.75 4.18 21.4 0.60 5.70 27.3 0.61 4.95 18.5 0.63 5.18 18.4
2009 2010 R595/R1676 0.64 6.68 37.6 0.57 5.82 31.4 R595/R1790 0.51 8.28 33.3 0.39 9.06 30.6
2010 2009 0.79 4.80 24.6 0.60 6.18 29.6 0.62 5.80 21.6 0.67 5.02 17.8
2009 2010 R701/R518 0.72 5.43 30.6 0.56 5.08 27.4 R701/R452 0.71 6.96 28.0 0.61 7.36 24.9
2010 2009 0.36 5.01 25.7 0.14 6.57 31.5 0.63 5.09 19.0 0.48 5.98 21.2
2009 2010 R701/R1240 0.59 6.28 35.4 0.53 4.90 26.4 R701/R1348 0.55 7.63 30.7 0.39 8.77 29.6
2010 2009 0.72 4.41 22.6 0.58 5.73 27.5 0.62 4.87 18.2 0.66 4.91 17.5
2009 2010 R701/R1676 0.68 6.56 37.0 0.61 5.86 31.6 R701/R1790 0.56 8.14 32.8 0.45 8.97 30.3
2010 2009 0.77 4.88 25.0 0.57 6.27 30.1 0.64 5.74 21.4 0.71 4.97 17.7
55
S.K. Singh et al. Field Crops Research 209 (2017) 4757
Table 6
Evaluation of models identied in the development and validation phases by cross-
validation between cultivars for leaf nitrogen (N) concentration and total chlorophyll
(TChl) content.
Leaf N concentration
Dale Top 76-6 R595/R1676 Development 0.63 2.77 14.9
Top 76-6 Dale 0.42 3.66 18.6
Dale Top 76-6 R595/R1240 Validation 0.61 2.85 15.3
Top 76-6 Dale 0.47 3.48 17.7
TChl content
Dale Top 76-6 R595/R508 Development 0.67 4.38 16.9
Top 76-6 Dale 0.60 5.27 18.2
Dale Top 76-6 R701/R1348 Validation 0.57 5.18 20.1
Top 76-6 Dale 0.52 5.52 19.1
Fig. 8. Actual versus predicted sweet sorghum leaf nitrogen (N) concentration (a) and
total chlorophyll (TChl) content (b) pooled across cultivars (Top 76-6 and Dale) and years
(2009 and 2010) of study (n = 160). Predicted values of leaf N concentration and TChl
content were determined using the general-purpose simple-ratio models R595/R1676 and
R595/R508, respectively. The letters R and RE refer to the canopy reectance at a given
wavelength and the percent relative error, respectively. Dotted lines represent the 1:1
lines.
56
S.K. Singh et al. Field Crops Research 209 (2017) 4757
greatest accuracy (the highest r2 and lowest RE). The analysis revealed Estimating corn leaf chlorophyll concentration from leaf and canopy reectance.
Remote Sens. Environ. 74, 229239.
that models R595/R1676 and R595/R508 were the best for the prediction Foster, A.J., Kakani, V.G., Mosali, J., 2016. Estimation of bioenergy crop yield and N
of leaf N concentration and TChl content (Table 6). However, the status by hyperspectral canopy reectance and partial least square regression.
Precision Agric. 118.
respective models showed the tendency of slightly overestimating leaf Fritschi, F.B., Ray, J., 2007. Soybean leaf nitrogen, chlorophyll content, and chlorophyll
N concentration at the lower end and TChl content at the upper end a/b ratio. Photosynthetica 45, 9298.
(Fig. 7). When developed and tested using distinct data sets, such biases Gardner, B.R., Blad, B.L., Thompson, D.R., Henderson, K.E., 1985. Evaluation and
interpretation of thematic mapper ratios in equations for estimating corn growth
in the spectral models are not surprising particularly during the parameters. Remote Sens. Environ. 18, 225234.
validation phase for the prediction of leaf N concentration or TChl Gausman, H.W., Burke John, J., Quisenberry Jerry, E., 1984. Use of leaf optical properties
in plant stress research. Bioregulators. American Chemical Society. ACS Symp. Ser.
content as also reported previously (Ryu et al., 2011; Singh et al.,
257, 215233.
2013). Gausman, H.W., 1974. Leaf reectance of near-infrared. Photogram. Eng. 40, 183191.
General purpose models (GPM) which integrate the variability Gitelson, A.A., Via, A., Ciganda, V., Rundquist, D.C., Arkebauer, T.J., 2005. Remote
estimation of canopy chlorophyll content in crops. Geophys. Res. Lett. 32, L08403.
across cultivars and environments (e.g. years of study) have been found Gray, S.B., Dermody, O., DeLucia, E.H., 2010. Spectral reectance from a soybean canopy
to be useful for the prediction of leaf N and photosynthetic pigments exposed to elevated CO2 and O3. J. Exp. Bot. 61, 44134422.
(Ryu et al., 2011; Singh et al., 2013). Thus, the identied best simple- Huang, J., Wei, C., Zhang, Y., Blackburn, G.A., Wang, X., Wei, C., Wang, J., 2015. Meta-
analysis of the detection of plant pigment concentrations using hyperspectral
ratio model in the cross-validation process for leaf N concentrations remotely sensed data. PLoS One 10, e0137029.
(R595/R1676) and TChl content (R595/R508) was used to develop a GPM Perry Jr, C.R., Lautenschlager, L.F., 1984. Functional equivalence of spectral vegetation
indices. Remote Sens. Environ. 14, 169182.
for each of the two traits by pooling the data across cultivars and years. Kanemasu, E.T., 1974. Seasonal canopy reectance patterns of wheat, sorghum, and
The GPM provided the universal coecients that might be used to soybean. Remote Sens. Environ. 3, 4347.
estimate leaf N concentration or TChl content in sweet sorghum Lenka, N.K., Lal, R., 2012. Soil-related constraints to the carbon dioxide fertilization
eect. Crit. Rev. Plant Sci. 31, 342357.
cultivars across years (Fig. 8). The regression line between actual and Lichtenthaler, H.K., 1987. Chlorophylls and carotenoids: pigments of photosynthesis.
estimated leaf N concentration or TChl content closely aligned with the Methods Enzymol. 148, 350352.
1:1 line, indicating good agreement between measured and estimated Ma, B.L., Morrison, M.J., Dwyer, L.M., 1996. Canopy light reectance and eld greenness
to assess nitrogen fertilization and yield of maize. Agron. J. 88, 915920.
values from the general-purpose simple-ratio spectral models. Ma, B.L., Dwyer, L.M., Costa, C., Cober, E.R., Morrison, M.J., 2001. Early prediction of
soybean yield from canopy reectance measurements. Agron. J. 93, 12271234.
Mani, S., Chellamuthu, V., Palanivel, A., Ramanathan, G., 1991. Spectral reectance of
5. Conclusion sorghum crop as inuenced by nutrient, irrigation and plant canopy. Agropedology 1,
9196.
In general, up to 168 kg ha1 N fertilizer, increasing the availability Maw, M.J.W., Houx III, J.H., Fritschi, F.B., 2016. Sweet sorghum ethanol yield
component response to nitrogen fertilization. Ind. Crop Prod. 84, 4349.
of N enhanced stem elongation rate, node addition, and plant height, Osaki, M., Shinano, T., Tadano, T., 1993. Eect of nitrogen application on the
and increased leaf N concentration and TChl content. Sweet sorghum accumulation of ribulose-1,5-bisphosphate carboxylase/oxygenase and chlorophyll in
several eld crops. Soil Sci. Plant Nutr. 39, 427436.
canopy reectance increased in response to reduced N availability and
Peuelas, J., Filella, I., 1998. Visible and near-infrared reectance techniques for
was most sensitive to N status in the visible region, specically near diagnosing plant physiological status. Trends Plant Sci. 3, 151156.
green (595 nm) and red (701 nm) wavebands. Results revealed that to Putnam, D.H., Lueschen, W.E., Kanne, B.K., Hoverstad, T.R., 1991. A comparison of sweet
sorghum cultivars and maize for ethanol production. J. Prod. Agric. 4, 377381.
estimate sweet sorghum growth, leaf N concentration, and TChl Richardson, A.D., Duigan, S.P., Berlyn, G.P., 2002. An evaluation of noninvasive methods
content, simple-ratio models exhibit better accuracy than the models to estimate foliar chlorophyll content. New Phytol. 153, 185194.
developed using only the most sensitive single-waveband. The devel- Rooney, W.L., Blumenthal, J., Bean, B., Mullet, J.E., 2007. Designing sorghum as a
dedicated bioenergy feedstock. Biofuels Bioprod. Bioref. 1, 147157.
opment and cross-validation of the models between years of study and Ryu, C., Suguri, M., Umeda, M., 2011. Multivariate analysis of nitrogen content for rice at
cultivars revealed the simple-ratio models R595/R1676 and R595/R508 as the heading stage using reectance of airborne hyperspectral remote sensing. Field
Crops Res. 122, 214224.
having the best accuracy for predicting leaf N concentration and TChl Saxton, A.M., 1998. A Macro for Converting Mean Separation Output to Letter Groupings
content, respectively. Hence, these simple ratios were used to develop in Proc Mixed. 23rd SAS User Group Intl., SAS Institute, N.C., USA.
general-purpose models and derive the coecients to estimate sweet Serro, M.G., Menino, M.R., Martins, J.C., Castanheira, N., Loureno, M.E., Janurio, I.,
Fernandes, M.L., Gonalves, M.C., 2012. Mineral leaf composition of sweet sorghum
sorghum leaf N concentration (-66.63 R595/R1676 + 34.14; r2 0.52; in relation to biomass and sugar yields under dierent nitrogen and salinity
RE 16.8%) and TChl content (-49.12 R595/R508 + 107.47; R2 0.64; conditions. Commun. Soil Sci. Plant Anal. 43, 23762388.
RE 17%) across years and cultivars. The identied spectral models can Sims, D.A., Gamon, J.A., 2002. Relationships between leaf pigment content and spectral
reectance across a wide range of species, leaf structures and developmental stages.
be used to assess growth, diagnose sweet sorghum N status and may be Remote Sens. Environ. 81, 337354.
useful to make N management decisions for site-specic fertilizer Singh, S.K., Hoyos-Villegas, V., Ray, J.D., Smith, J.R., Fritschi, F.B., 2013. Quantication
of leaf pigments in soybean (Glycine max (L.) Merr.) based on wavelet decomposition
applications. of hyperspectral features. Field Crops Res. 149, 2032.
Singh, S.K., Reddy, V.R., Fleisher, H.D., Timlin, J.D., 2014. Growth, nutrient dynamics,
References and eciency responses to carbon dioxide and phosphorus nutrition in soybean. J.
Plant Int. 9, 838849.
Singh, S.K., Reddy, V.R., Sharma, M.P., Agnihotri, R., 2015. Dynamics of plant nutrients,
AOAC, 2006. Ocial Methods of Analysis. Association of Ocial Analytical Chemists. utilization and uptake, and soil microbial community in crops under ambient and
Methods 990.03 and 920.39, 18th ed. AOAC Int., Gaithersburg, MD. elevated carbon dioxide. In: Rakshit, A., Singh, H.B., Sen, A. (Eds.), Nutrient Use
Anten, N.P.R., Schieving, F., Medina, E., Werger, M.J.A., Schuelen, P., 1995. Optimal Eciency: from Basics to Advances. Springer India, Ne-w Delhi, pp. 381399.
leaf area indices in C3 and C4 mono- and dicotyledonous species at low and high Snyder, C.S., Bruulsema, T.W., Jensen, T.L., Fixen, P.E., 2009. Review of greenhouse gas
nitrogen availability. Physiol. Plant 95, 541550. emissions from crop production systems and fertilizer management eects. Agric.
Bausch, W.C., Diker, K., 2001. Innovative remote sensing techniques to increase nitrogen Ecosyst. Environ. 133, 247266.
use eciency of corn. Commun. Soil Sci. Plant Anal. 32, 13711390. Yi, Q.-X., Huang, J.-F., Wang, F.-M., Wang, X.-Z., Liu, Z.-Y., 2007. Monitoring rice
Bausch, W.C., Duke, H.R., 1996. Remote sensing of plant nitrogen status in corn. Trans. nitrogen status using hyperspectral reectance and articial neural network. Environ.
ASAE 39, 18691875. Sci. Technol. 41, 67706775.
Blackburn, G.A., 2007. Wavelet decomposition of hyperspectral data: a novel approach to Young, K.J., Long, S.P., 2000. Crop ecosystem responses to climatic change: maize and
quantifying pigment concentrations in vegetation. Int. J. Remote Sens. 28, sorghum. In: Reddy, K.R., Hodges, H.F. (Eds.), Climate Change and Global Crop
28312855. Productivity. CABI Publishing, Wallingford, pp. 107131.
Blackmer, T.M., Schepers, J.S., Varvel, G.E., 1994. Light reectance compared with other Yu, K., Lenz-Wiedemann, V., Chen, X., Bareth, G., 2014. Estimating leaf chlorophyll of
nitrogen stress measurements in corn leaves. Agron. J. 86, 934938. barley at dierent growth stages using spectral indices to reduce soil background and
Carter, G.A., Spiering, B.A., 2002. Optical properties of intact leaves for estimating canopy structure eects. ISPRS J. Photogramm. Remote Sens. 97, 5877.
chlorophyll concentration. J. Environ. Qual. 31. Zhao, D., Reddy, K.R., Kakani, V.G., Reddy, V.R., 2005. Nitrogen deciency eects on
Chappelle, E.W., Kim, M.S., McMurtrey III, J.E., 1992. Ratio analysis of reectance plant growth, leaf photosynthesis, and hyperspectral reectance properties of
spectra (RARS) An algorithm for the remote estimation of the concentrations of sorghum. Eur. J. Agron. 22, 391403.
chlorophyll A, chlorophyll B, and carotenoids in soybean leaves. Remote Sens. Zhao, D., Reddy, K.R., Kakani, V.G., Read, J.J., Koti, S., 2007. Canopy reectance in
Environ. 39, 239247. cotton for growth assessment and prediction of lint yield. Eur. J. Agron. 26, 335344.
Daughtry, C.S.T., Walthall, C.L., Kim, M.S., de Colstoun, E.B., McMurtreyIii, J.E., 2000.
57