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http://doi.org/10.5281/zenodo.1098487
Please cite this article in press as R Deepa et al., Elucidation of Biofilm Inhibition in Different Clinical Isolates
Using Naturally Isolated Compounds from Albizia Odoratissima, Indo Am. J. P. Sci, 2017; 4(12).
INTRODUCTION:
A wide variety of microbial infections in the body and the most frequent cause of nosocomial infections
(~80%) are caused by bacterial biofilm. A collection [7, 8, 9].
of microbial communities enclosed by a matrix of
extracellular polymeric substance (EPS),which S.epidermidis is part of the normal human epithelial
separated by a network of open water channels is bacterial flora but can cause infections when the skin
called biofilm. Microbial communities adhere to or mucous membrane is injured. S. epidermidis can
manmade and natural surfaces, such as metals and develop into biofilms and become a persistent source
surgicares, typically at liquid-solid interface [1]. of device-associated infections [10]. S.epidermidis
Major clinical importance because more than 60% of plays a major role in biofilm-based medical-device-
the bacterial infections currently treated by related infections [11]. These bacterial communities
physicians in the developed world are considered due pose a critical problem in everyday life, causing
to biofilm formation (Fux et al. 2005) [2]. Biofilms many economic and health problems. A biofilm on an
have been recognized as being important inhuman indwelling urinary catheter consists of adherent
disease, and the numbers of biofilm-associated microorganisms, their extracellular products, and host
infections are on the rise (Davies 2003) [3]. Different components deposited on the catheter. Catheter
infections due to biofilm forming bacteria such as Associated Urinary Tract Infections (CAUTIs) are
Escherichia coli, Staphylococcus aureus, Klebseilla the most common form of hospital acquired
pneumonia, Staphylococcus epidermidis in body infections - HAIs - with more than 560,000
tissues, leading to several diseases. In this work three cases/year estimated in the US alone CAUTI is also
biofilm forming pathogen such as Pseudomonas the leading cause of secondary bloodstream
aeruginosa, Klebsiella pneumonia and infections. Therefore, alternative sources of
Staphylococcus epidermidis were used for biofilm antimicrobial substances are required. Currently
inhibition studies. Pseudomonas aeruginosa is an natural products are a major source of chemical
opportunistic pathogen that forms biofilms on tissues diversity and have provided important therapeutic
and other surfaces and it is an important causative agents for many bacterial diseases [12] and natural
agent of a variety of acute and chronic infections, compounds have no side effect and plant molecules
including burn, infections of respiratory tract, urinary are green and safe for prolonged use in the
tract, eye and ear [4]. Biofilm-associated diseases are management of diseases.
common characteristic of P. aeruginosa infections is
that they are caused by bacterial association with Plants offer a rich source of antimicrobial agents and
surfaces, either human tissue or indwelling devices other pharmaceuticals (Cowan 1999; Zhao et al.
[5]. Severe underlying diseases caused by 2005;Li & Vederas 2009). However, of the 500,000
opportunistic pathogen such as Klebsiella pneumonia plant species, only 1% has been phytochemically
that infects immune compromised patients who are investigated from the perspective of antimicrobial
hospitalized or suffering from chronic pulmonary activity (Cowan 1999; Palombo 2009)[13]. As an
obstruction or diabetes(Allen et al., 1991). These adaptive evolution, many plant species produce
bacterial infections can lead to complications, metabolites that can control the growth of microbes
including urinary tract infections, septicemia and and have traditionally been used to treat human
pneumonia in the elderly or in patients with diseases, particularly microbial infections[14].
predisposing factors (Williams and Tomas, 1990). Polyphenols (especially flavonoids) from plants have
Infections due to K. pneumoniae are particularly been acting as potent antimicrobial molecules.
devastating with a mortality rate between 25 and 60% Phenolic compounds have proven effective in
(Ellis, 1998). K. pneumoniae is naturally present at inhibiting the growth and biofilm formation by
low concentrations in the environment, but also in the pathogenic bacteria Flavonoids are a group of
gastrointestinal tract and natural cavities of humans, heterocyclic organic compounds that occur widely in
and constitute aggregates called biofilms. the plant kingdom (Havsteen 1983). They are found
Furthermore, formation of biofilms by K. in fruits, vegetables, nuts, seeds, stems, flowers as
pneumoniae on urinary catheters and intravenous and well as tea, wine (Middleton and Chithan 1993) and
prosthetic heart valves has been documentted (Farber honey (Grange and Davey1990) and represent a
and Wolff, 1993; Galdiero et al., 1987; Liu, 1993). common constituent of the human diet (Harborne and
This property is considered as an important virulence Baxter 1999).Many flavonoids that are ubiquitous in
factor for K. pneumoniae (Jagnow and Clegg, 2003) the plant kingdom are biologically active in
[6]. Staphylococcus epidermidis is one of the most combating diseases due to their diverse beneficial
commonly isolated bacterial pathogens in hospitals roles in humans.
Herein, for the first time, we have isolated three gave single spot on TLC and it was further purified
flavone compounds namely Eupatorin [15-22],6- and recrystallised from methanol to yield yellow
methoxy flavone [23, 24],6,2,4-trimethoxy flavone colour compound 1 (10mg) and it was characterized
from the stems and stem bark of Albizia odoratissima by 1 H NMR, 13CNMR, ESI-MS and FT-IR
plant even though it was already isolated by the few techniques.
groups from different plant sources.
Materials and methods
To our best of knowledge there are no reports The NMR spectra for 1H and 13C in CDCl3were
available for antibiofilm activities of three flavone recorded on a Bruker 300 spectrometer, with TMS.
compounds.Therefore the present study was to Electrospray ionization mass spectrometry (ESI-MS)
investigate the isolation of three flavone compounds analysis was performed in the positive ion mode on a
for the first time from the stem bark of Albizia liquid chromatography-ion trap mass spectrometer
odoratissima and also report the antibiofilm effect of (LCQ Fleet, Thermo Fisher Instruments Limited,
active three flavones against three biofilm forming US).The samples were introduced into the ion source
bacteria such as Pseudomonas aeruginosa, Klebseilla by in fusion method at flow rate 1L/min. The
pneumonia and Staphylococcus epidermidis by capillary voltage of the mass spectrometer was 33 V,
Microtitre plate method. with source voltage 4.98 kV for the mass scale (m/z
1502000).
MATERIALS AND METHODS:
The NMR spectra for 1H and 13C in CDCl3were Plant material
recorded on a Bruker 300 spectrometer, with TMS. The stem of Albizia odoratissima was collected from
Electrospray ionization mass spectrometry (ESI-MS) Madurai kamaraj university, Madurai at August
analysis was performed in the positive ion mode on a 2015. The stems were collected, washed with double
liquid chromatography-ion trap mass spectrometer distilled water and then dried at room temperature.
(LCQ Fleet, Thermo Fisher Instruments Limited,
US).The samples were introduced into the ion source Extraction and isolation of compounds
by in fusion method at flow rate 1L/min. The Isolation of compound 1
capillary voltage of the mass spectrometer was 33 V, The stems were collected, washed with double
with source voltage 4.98 kV for the mass scale (m/z distilled water and then dried at room temperature.
1502000). The dried stems of the plant (2kg) were first extracted
with petroleum ether (2L)using soxhlet apparatus for
Plant material 2 days. At first petroleum ether is used to remove
The stem of Albizia odoratissima was collected from wax from the plant material.Then extracted with
Madurai kamaraj university, Madurai at August chloroform (2L) for 2 days.The chloroform extract
2015. The stems were collected, washed with double was evaporated to dryness under reduced pressure to
distilled water and then dried at room temperature. yield a crude residue (10g).Its subsequent column
chromatography on silica gel (60-120 mesh MERCK)
Extraction and isolation of compounds eluted with Pet ether with increasing gradient of
Isolation of compound 1 chloroform upto (100%) to gave 30 fractions that
The stems were collected, washed with double were monitored by TLC silicgel. The active fractions
distilled water and then dried at room temperature. 13-15 were repeatedly chromatographed on silicagel
The dried stems of the plant (2kg)were first extracted coumn and then, eluted with chloroform: methanol
with petroleum ether(2L)using soxhlet apparatus for (90:10)as the developing solvent .Fraction-13,14 was
2 days. At first petroleum ether is used to remove obtained as a mixture of spot and fraction-15 gave
wax from the plant material.Then extracted with single spot on TLC and it was further purified and
chloroform (2L) for 2 days.The chloroform extract recrystallised from methanol to yield yellow colour
was evaporated to dryness under reduced pressure to compound 1 (10mg) and it was characterized by 1H
yield a crude residue (10g). Its subsequent column NMR,13CNMR,ESI-MS and FT-IR techniques.
chromatography on silica gel (60-120 mesh MERCK)
eluted with Pet ether with increasing gradient of Isolation of compound 2:
chloroform upto (100%) to gave 30 fractions that The freshly collected,air dried and powdered stem
were monitored by TLC silicgel. The active fractions bark(2kg) was exhaustively extracted with
13-15 were repeatedly chromatographed on silicagel methanol(3x10 litres)for 3 days.The combined
coumn and then, eluted with chloroform: methanol methanolic extract was evaporated under reduced
(90:10) as the developing solvent. Fraction-13, 14 pressure at room temperature to yield a crude
was obtained as a mixture of spot and fraction-15 residue(600g).The whole extract was suspended in
water and successivey extracted with n- cultured on the following media: Luria bertani (LB)
Hexane(100g),chloroform(50g),ethyl agar/broth medium (HiMedia Laboratories, India).
acetate(70g).The chloroform soluble fraction was
subjected to column chromatography over silica gel Preparation of natural compounds
and eluted with pet ether,pet ether-choroform, The naturally isolated compounds 1,2 and 3 were
chloroform, chloroform-methanol with gradient dissolved in dimethyl sulphoxide at a concentration
increase in polarity to yield 10 subfractions.The 8th of 1mg/ml.
subfractions were a binary mixture of two
compounds that was rechromatographed over Determination of minimum inhibitory
silicagel and eluted with pet ether-chloroform(8:2)to concentration of natural compounds
afford compound in pure form(20mg) and it was To determine the minimum inhibitory concentration
recrystallized from methanol to yield white colour (MIC) of the natural compounds 1,2 and 3 was
needle shape compound obtained. evaluated against three bacterial pathogens by the
broth microdilution method (Basri and Fan, 2005).
Isolation of compound 3: The stock solutions of the natural compounds were
The stem (2kg) were collected,dried at room dissolved in DMSO (Initial concentration, 1mg/mL).
temperature,grounded and then successively The initial test concentration was serially diluted
extracted with pet ether and chloroform. The (g/ml,ng/ml). Each well was inoculated with 200l
chloroform extract was concentrated under reduced of suspension containing 106CFU/ml1 of bacteria.
pressure to yield 100g of yellow viscous mass which The plates with bacteria were incubated at 370C for
was subjected to silic gel chromatography. The 24 hours. The lowest concentration exhibiting
column was eluted with petether and then chloroform complete inhibition of the microbial growth was
to give 5 fractions. Fraction 3 was separated by taken as the MIC. The tubes were visually examined
silicagel by eluting with CHCl3-acetone (4:1) to give for the lowest concentration of isolated compound
4 subfractions. Subfraction 2 which was then purified that showed inhibition of microbial growth (indicated
on column eluting with CHCl3-MeOH (6:1) gave 4 by a clear solution) after 24 h .The experiment was
fractions. Fraction 3 contained a flavone which was performed in duplicate. Bacterial suspensions were
further recrystallized from methanol, yielded used as negative control, while broth containing
compound 3 (10mg). standard drug(Ganamycin) was used as positive
control.
Compounds identification:
To determine the structure of this compounds was Biofilm inhibition assay
established by comparison of its spectral data with Only those isolates were used in the biofilm-
previous literature values. inhibition assay. Test compounds were dissolved in
DMSO (1mg/mL), and twofold dilutions were
Bacterial strains prepared to obtain a final concentration ranging from
Pseudomonas aeruginosa, Klebsiella pneumonia, (mg/ml,g/ml,ng/ml) in the wells after the addition of
Staphylococcus epidermidis stains were isolated from the freshly diluted LB broth culture containing
different biological sources and were used for further 106CFU/ml1 of biofilm-forming isolates per well as
biofilm inhibition assays. Bacterial samples were shown in Fig. 1
After incubation at 370C for 24 hours, the planktonic Scanning electron microscopy
suspension and nutrient solution were aspirated and Scanning electron microscopy (SEM) was used to
each well was washed three times with 300 L of observe the architecture of P.aeuroginosa biofilms
sterile physiological saline. The plates were strongly grown in the presence of compound 2 (0.5 MIC
shaken to remove all nonadherent bacteria. The concentration) and to evaluate the eradication of
remaining attached bacteria were fixed with 250 mL established biofilms treated with compound 2.
of 96% ethanol/well and, after 15minutes; the plates Sample preparation of biofilms (24 h and preformed)
were emptied and left to dry. Each well was then were analyzed by Scanning Electron Microscopy
stained for 5 minutes with 200L of 2% crystal violet (SEM) (VEGA-3, TESCON) follow-ing standard
(CV Gramstain, Merck, Germany). The stain was preparative techniques using CD1CN at 250mg/ml
rinsed off by placing the plates under running tap [26]. Briefly, biofilms were formed in 24-well
water. After drying the stained plates, biofilms were microplates. Each sample was inoculated with a
visible as purple rings on the sides of each well as defined volume of overnight culture. Biofilms on the
shown in Fig. 2 glass pieces were fixed for 2h in solution containing
40%glutaraldehyde. Further the glass pieces were
The quantitative analysis of biofilm formation was washed with phosphate buffer saline(pH-7) and dehy-
performed by adding 200 L of 33 %( v/v) glacial drated with alcohol (70% ethanol for 10 min, 95%
acetic acid (Merck) perwell. The optical density (OD) ethanol for 10 min, and 100% ethanol for 20 min),
of the stain was then measured at 595 nm using an and allowed to dry prior to gold sputtered.
enzyme-linked immunosorbent assay reader (Elisa,
Germany) as described previously. The inhibitory The scanning electron microscopy images of
effect of the compounds on biofilm production was different biofilm producers shows effective inhibition
calculated by subtracting the media control. The against three compounds using P.aeruginosa. High
biofilm inhibitory concentration (BIC) is the (MBIC) minimum biofilm inhibitory concentration
concentration of the natural compound at which the inferred at ng/ml of all the compounds.To compare
biofilm formation was reduced to an absorbance the two concentrations, only nano concentrations of
(A595) < 0.5 OD. Each assay for BIC determination compound 2 shows very high inhibition assay. Based
was performed in triplicate.The percentage of biofilm on these results the compound-2 was taken for further
inhibition was calculated by the formula [25] real sample testing.
Biofilm formation by P.aeruginosa on catheter were used for biofilm inhibition assay against
Biofilms of P.aeruginosa were grown on small sterile P.aeruginosa.
catheter piece (surface area 1.0 cm2) cut from Foley
catheter obtained from JIPMER, manufactured by Statistical analyses
SISCO latex Pvt.Ltd., (Pudhucherry). The material Biofilm inhibition data was statisticaly analysed by
was sterilized with ethanol (70%) and rinsed with using Graph pad prism software [28]. All the
distilled water. Flat square pieces, 1.0 cm in experiments were performed in duplicates and data
diameter, were obtained by cutting with a sterile are expressed as mean standard deviation. The
surgical knife, the protocol followed by Chandra et results were analysed using two-way ANOVA. where
al.[27]. A 100l quantity of the cell suspension was homogeneity of variances was not met,the non
applied to the surfaces of 1.0 cm2 catheter piece parametric Dunnetts multiple comparison test was
placed in a sterile petri plate. The cells were allowed applied. Results were presented as the mean standard
to adhere for 90 min at 370C (adhesion phase). Non deviation and differences were accepted as
adherent cells were removed from the tube by gently significant for p < 0.05(5% of the significance level).
washed with 5 ml of PBS.
RESULTS AND DISCUSSION:
Coating catheters with natural compounds Biofilm production assay by microtitre plate test
Polyurethane triple-lumen central venous catheters The biofilm production assay shows higher
(20 cm long and 13 gauge) that had been pretreated production after 48h of incubation for three reference
with the cationic surfactant strains. Biofilm formation level was significantly
tridodecylmethylammonium chloride to enable more in P.aeruginosa when compare to K.pneumonia
subsequent bonding of natural compounds. The and S.epidermidis. K.pneumonia shows very low
compounds were prepared with three different biofilm production while compare with other two
concentrations using DMSO. Bio-Guard catheters strains. From this results biofilm inhibition assay was
were dipped in ng/ml of all the compounds for 15 carried out using different natural compounds in
min and were then removed and allowed to dry different concentration levels as indicated in Fig. 3.
overnight. Then the processed and fresh catheters
Fig. 3: Biofilm forming ability of reference strains during 48h at 370C .The bars on the graph represent
mean SD of biofilm formation from three independent experiments
Determination of minimum inhibitory The results of MIC values for compound 1,2 and 3
concentration of naturally isolated flavones tested against different biofilm producers as control
are depicted in fig. 4,5 and 6.
Fig. 5: Minimum inhibitory concentration of compound 1, 2, and 3 in the presence of K.pneumonia in a 96-
well microtitre plate. Experiments were conducted in duplicate and error bars represent standard deviations
Fig. 6: Minimum inhibitory concentration of compound 1, 2, and 3 in the presence of S.epidermidis in a 96-
well microtitre plate. Experiments were conducted in duplicate and error bars represent standard deviations
The present experimental data demonstrated that a whereas that of compound 3 and compound 1 was
significant difference in the MIC of the natural 79.50 & 77.86, (MIC, compound 2 < 3 < 1). These
compounds was noted as shown in Table 1. The MIC results confirm that compound 2 and 3 is the most
of compound 2 was 82.78 against K.pneumonia, potent antimicrobial compound.
Table 1: Percentage of Minimum Inhibitory Concentration (MIC) of compound 1,2 and 3 in biofilm
producing isolates P.aeruginosa, K.pneumonia and S.epidermidis
Isolates Compound 1 Compound 2 Compound 3
K.pneumonia 77.86 69.97 63.72 79.61 80.94 82.78 71.72 75.71 79.50
S.epidermidis 39.68 32.01 30.55 44.57 35.44 42.46 42.98 48.41 46.95
Biofilm inhibition assay of compounds study reveals that the compound 2 inhibited
The minimum biofilm inhibitory concentration Pseudomonas aeuroginosa was at 95%(fig. 8)
(MBIC) of compounds 1,2 & 3 was determined because one methoxy group present at meta position.
toward three strains from different sources, selected In general methoxy group contribute the best biofilm
in the present study due to their strong biofilm- activity because methoxylation is an important
forming ability. Two gram-negative and only one molecular feature for membrane penetration [29].
gram positive strains S.epidermidis used in this study. Compound-3 (fig. 9) had a 94.72% of biofilm
The compounds were used in three different inhibition against P.aeruginosa with concentration of
concentrations (mg/ml,g/ml,ng/ml) against three 1mg /ml as depicted in table 2. In compound 1 and 3,
different cultures. As a result compound-1 shows biofilm inhibitory activity was less because three
93% of MBIC with 1ng/ml against K.pneumonia and methoxy group is present. To compare the previous
S.epidermidis (fig. 7).Compound-2 shows maximum reported data compounds with three methoxy groups
biofilm inhibition (95%) at 1ng/ml against strong were less active than the compounds with dimethoxy,
biofilm producer P.aeruginosa. Results of the present because their demethoxylation was incomplete.
Table 2: Biofilm inhibition (%) of three isolates with naturally isolated compounds 1,2 and 3 at different
concentration of inhibition values are mean SD
Biofilm forming
isolates Compound 1 Compound 2 Compound 3
90.3750.1767 (1mg/ml) 94.680.2404(1mg/ml) 94.720.4242(1mg/ml)
P. aeruginosa 88.0050.1909(1ug/ml) 94.460.1626(1ug/ml) 94.040.3676(1ug/ml)
93.930.9899(1ng/ml) 95.000.9192(1ng/ml) 94.390.6717(1ng/ml)
SEM image of all the three compound the adhesion of P.aeruginosa and prevent its biofilm
The effect of compound 1,2 and 3 upon formation at 1ng/ml. Fig. 11 Showed that , In
P.aeruginosa, K.pneumonia and S.epidermidis treated K. pneumonia cells the number of attached
structural morphological changes of three different bacterial biofilm cells was reduced at all the three
bacteria were examined by SEM.SEM analysis different concentrations of three compound when
revealed that in the absence of compounds exhibited compared with the control but compound 2 more
at rod-shape,rod- shape and cocci in grape-like number of cells reduced at 1ng/ml. Considering
clusters with smooth surfaces(micrographs shown in S.epidermidis images inhibition start at 1mg/ml of
fig.10,11 and 12).SEM of three compound treated three compounds and the cell wall was ruptured and
with P.aeruginosa (Fig. 10)it showed the formation holes formed at 1mg/ml of compound 3.
of holes and number of the cell was reduced at three
different concentrations and compound 2 can inhibit
Fig. 10: Scanning electron micrographs of P.aeruginosa biofilm inhibition and their treatment with three
different concentrations of (a= 1mg, b = 1ug, c= 1ng ) compound 1,2 and 3 (a) Control
Fig. 11: Scanning electron micrographs of K. pneumonia biofilm inhibition and their treatment with three
different concentrations of (a1= 1mg, b1 = 1ug, c1 = 1ng ) compound 1,2 and 3 (a1) Control
Fig. 12: Scanning electron micrographs of S.epidermidis biofilm inhibition and their treatment with three
different concentrations of (a2= 1mg, b2 = 1ug, c2 = 1ng ) compound 1,2 and 3 (a2) Control
Microscopic evaluation of P.aeruginosa biofilms then placed in a sterilized petri plate. The biofilms
on catheter by SEM were air dried for 3 h. The pieces were then coated
P.aeruginosa biofilm formed after 72 h incubation on with gold and then imaged using a SEM in a high
catheter piece from each isolate was observed under vacuum mode at 8 kV as shown in fig. 13. Scanning
SEM. Catheter pieces were picked up by sterile electron micrographs of the biofilm were taken at 10
forceps from the SDB and gently washed in 5 ml of kx magnification.
PBS to remove non adherent cells. The pieces were
Fig.14: P.aeruginosa biofilm growth on catheter by SEM a) control b)in the presence of compound 2