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Molecules
Course Organizer: Prof S Howorka
Aims
The aim of the course is to cover in depth the chemistry of three major classes of biologically
important molecules; carbohydrates, peptides and proteins, and nucleic acids. In addition, the
course will provide an introduction to molecular imaging and cover methods for labelling of
biomolecules with fluorescent dyes and radionuclides. The course is aimed at second year
Biological Sciences and certain Natural Science students, and some knowledge of organic
chemistry is assumed; a pass in CHEM1201 or CHEM1603 is therefore a prerequisite. It is
not available for Chemistry students.
Objectives
Course Structure
• Lectures:24 hours
• Tutorials:0 workshops
• Labs:0
Assessment
• Exam: 80 % (2 hours)
• Lab: 0 %
• Coursework: one in-class test 20%
Recommended Texts
Carbohydrates
Nucleic Acids
• http://www.atdbio.com/nucleic-acids-book
Peptides
Imaging
Course Outline
Overview of amino acids, structure and physical properties. Chemical synthesis of amino
acids. Amino acid protecting groups. Reagents for forming peptide bonds. Chemical
synthesis of peptides using solution and solid-phase methods. Combinatorial libraries of
peptides. Labelling of peptides with dyes and other markers.
Nucleic Acids SH, 7 lectures Examples of nucleic acids and evolutionary aspects, structure
and conformation of nucleotides and oligonucleotides. Relationship between nucleotide
conformation and tertiary structure of DNA and RNA. Deviations from ideal structures.
Mismatches and mutagenesis. Triple helices. Structure and biological properties of modifies
oligonucleotides.
Interactions of small molecules with DNA. Non-covalent binding: electrostatic, minor
groove, intercalation, biological consequences. Covalent binding: alkylating agents,
metabolically activated alkylating agents. Free radical and photochemical damage to DNA.
Anticancer drugs and environmental mutagens. Biological consequences of DNA damage;
DNA repair enzymes.