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Received 23 March 2005; received in revised form 30 June 2005; accepted 30 June 2005
Abstract
Models of the mind are based on the idea that neuron microtubules can perform computation. From this point of view,
information processing is the fundamental issue for understanding the brain mechanisms that produce consciousness. The
cytoskeleton polymers could store and process information through their dynamic coupling mediated by mechanical energy. We
analyze the problem of information transfer and storage in brain microtubules, considering them as a communication channel.
We discuss the implications of assuming that consciousness is generated by the subneuronal process.
© 2005 Elsevier Ireland Ltd. All rights reserved.
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doi:10.1016/j.biosystems.2005.06.011
2 J. Faber et al. / BioSystems 83 (2006) 1–9
crotubule store and process information? In order to and participates in signal transmission to the neighbor-
analyze these questions they use a classical approach, hood of the cell (Pokorný and Ming Wu, 1998; Kandel
studying the basic physical properties of the MTs as et al., 1991).
interacting electric dipoles. Microtubules are hollow cylinders whose exterior
According to Tuszyński et al. (1997, 1998, 1995), surface cross-section diameter measures 25 nm with 13
Satarić et al. (1993), Brown and Tuszyński (1997), arrays of protein dimers (tubulins). The interior of the
Pokorný and Ming Wu (1998) and Kandel et al. (1991) cylinder contains ordered water molecules which im-
each tubulin has an electric dipole moment − →p due to plies the existence of an electric dipole moment and an
an asymmetric charge distribution. The microtubule is electric field. The MTs represent a dipole due to indi-
thus a lattice of oriented dipoles that can be in random vidual dipolar charges of each tubulin monomer. The
phase, ferroelectric (parallel-aligned) and an interme- microtubule dipole produces a fast growth at the plus
diate weakly ferroelectric phase like a spin-glass phase. end towards the cell periphery and a slow growth at the
It is natural to consider the electric field of each tubulin minus end. The MT polarity is closely connected with
as the information transport medium. its functional behavior which can be regulated by phos-
Therefore, the tubulin dimers would be considered phorylation and dephosphorylation of microtubule-
the information unit in the brain and the MT sub- associated protein (MAP) (Tuszyński et al., 1997, 1998,
processors of the neuron cells. Therefore, to know how 1995; Satarić et al., 1993; Brown and Tuszyński, 1997;
MTs process information and allow communication in- Pokorný and Ming Wu, 1998; Kandel et al., 1991).
side the brain is a fundamental point to understand the Guanosine triphosphate molecules (GTP) are bound
mind functions. to both tubulins in the heterodimer. After polymeriza-
In this work, we derive some results which were tion, when the heterodimer is attached to the micro-
not explicitly obtained in Tuszyński et al. (1997, 1998, tubule, the GTP bound to the -tubulin is hydrolyzed to
1995) and extend the ideas introduced by Tuszyński the guanosine disphosphate (GDP). On the other hand,
et al. (1997) and Pokorný and Ming Wu (1998) using the GTP molecule of the ␣-tubulin is not hydrolyzed.
the point of view of the information theory. We ana- The microtubules present a calm dynamic instability
lyze the problem of information transfer and storage which are their principal feature (Tuszyński et al., 1997,
in brain microtubules, considering them as a commu- 1998, 1995).
nication channel. The electric field is the mediator of Many models of conformation (and polarity en-
each communicator entity. We discuss the implications ergy) of the microtubular protofilament were devel-
of assuming that the consciousness is generated by the oped. These models describe the behavior of the pulses
microtubules as sub-neuronal processors. generated by the free energy in the GTP hydrolysis. The
pulses propagate along the MTs using the elastic cou-
pling or the electric field propagation between tubulin
2. Biophysical aspects of the microtubules dimers (Rosa and Faber, 2004; Tuszyński et al., 1997,
1998, 1995; Satarić et al., 1993; Brown and Tuszyński,
The cytoskeleton has a dynamical structure. It re- 1997). The overall effect of the surrounding dipoles on
organizes continually as the cells change their shape, a site n can be modelled by the double-well quartic
divide, and respond to their environment. The cy- potential (Tuszyński et al., 1997, 1998)
toskeleton is composed of intermediate filaments, actin
a 2 b 4
filaments (or microfilaments), and microtubules. The V (un ) = u + u , (1)
filaments and the microtubules are mutually connected 2 n 4 n
and form a three-dimensional network in the cell. There where un represents the dimer conformational change
are many papers (Tuszyński et al., 1997, 1998, 1995) on the nth protofilament axis coupled to the dipole mo-
showing that the cytoskeleton is the main compo- ment. a depends on the temperature a = ā(T − Tc ), Tc
nent which organizes the cell, mediates transport of is the critical temperature and b is a positive parameter
molecules, organelles, and synaptic vesicles. The cy- that does not depend on the temperature (Tuszyński et
toskeleton possibly receives signals from the cellular al., 1997, 1995). In Fig. 1, we plot the effective potential
environment mediated by the membrane of proteins in terms of un .
J. Faber et al. / BioSystems 83 (2006) 1–9 3
and
I(X|Y ) = − p(xi , yk ) log p(xi |yk ), (4)
i k
= I(Y ) − I(Y |X) (3) time it is used, and different uses are independent of one another.
4 J. Faber et al. / BioSystems 83 (2006) 1–9
where Sj = ℘j2 η3 ενj4 , νj the dipole frequency, ε the a communication among the domains are at the
permitivity, η the permeability of the medium, Rx and
Rz are the perpendicular distances from the dipole to
the z and x sides, respectively (Pokorný and Ming Wu,
1998).
Using (3) and (4), and the previous relations, we
can derive an expression for the capacity of com-
munication between two domains. The channel be-
tween two domains j and k will be denoted by Njk ,
hence,
Ω(Njk ) = I(Ek ) − I(Ek |Ej ), (19)
where I(Ek ) is given by an expression similar to (11).
The conditional information I(Ek |Ej ), for a specific
polarity ℘j , can be calculated by a continuous version
Fig. 9. Communication capacity: frequency υj × distance Rz when
of (4), that is, T ∼ 300K.
I(Ek |Ej )
ln Z signal
= −β g(℘k , ℘j )(Ek + Ej ) d℘k . (20)
ln 2
Through those calculations we can infer that there
is an inter-dependence among the domains in the SG
phase. Each domain communicates to other domain
the value of its polarity. It transforms the MT in a
net of communication units (in this case the units are
the domains—see Fig. 8). Besides, as each domain
has a particular polarity, in the context of the infor-
mation theory, we can interpret each polarity repre-
senting a type of symbol. It would build a kind of
alphabet along the whole MT, where each domain Fig. 10. Communication capacity: frequency υj × distance Rz when
represents a letter. However, since the polarity ℘ is T ∼ 100K.
8 J. Faber et al. / BioSystems 83 (2006) 1–9
5. Conclusions
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