Académique Documents
Professionnel Documents
Culture Documents
Center for Computational Biology (2016). A spliced read mapper for RNA-Seq [Software].
Retrieved from
https://ccb.jhu.edu/software/tophat/manual.shtml
https://www.sas.com/en_us/insights/big-data/data-visualization.html
http://genetics.emory.edu/about/index.html
Krill, P. (June 30, 2015). Why R? The pros and cons of the R language. Retrieved from
https://www.infoworld.com/article/2940864/application-development/r-programming-
language-statistical-data-analysis.html
Mackenzie, R. J. (April 06, 2018). RNA-seq: Basic Applications and Protocol. Technology
https://www.technologynetworks.com/genomics/articles/rna-seq-basics-applications-and-
protocol-299461
Neuwirth, E. (February 19, 2015). Package 'RColorBrewer' (Version 1.1-2) [Software PDF].
https://cran.r-project.org/web/packages/RColorBrewer/RColorBrewer.pdf
https://opensource.com/resources/what-open-source
Patil, N. (November 26, 2018). Reproducing the Bioinformatics Analysis and Data Visualization
https://digitalworldbiology.com/archive/basics-how-do-you-sequence-genome-part-iii-
reads-and-chromats
Quinlan Lab at University of Utah (December 08, 2017). Bedtools Documentation (Version
https://media.readthedocs.org/pdf/bedtools/latest/bedtools.pdf
R Core Team. (July 2, 2018). R Language Definition (Version 3.5.1) [Software PDF].
https://cran.r-project.org/doc/manuals/r-release/R-lang.pdf
RNA Sequencing Analysis With TopHat [Software PDF]. (n.d.). Retrieved from
https://www.illumina.com/documents/products/technotes/RNASeqAnalysisTopHat.pdf
Sequence Read Archive (2018a). SRA Toolkit Documentation: Tool Prefetch [Software].
https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=toolkit_doc&f=prefetch
Sequence Read Archive (2018b). SRA Toolkit Documentation: Tool fastq-dump [Software].
https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=toolkit_doc&f=fastq-dump
Sievert, C., Parmer, C., Hocking, T., Chamberlain, S., Ram, K., Corvellec, M., & Despouy, P.
(July 20, 2018). Package 'plotly' (Version 4.8.0) [Software PDF]. Comprehensive R
https://cran.r-project.org/web/packages/plotly/plotly.pdf
Stöppler, M. C. (2016). Definition of Bioinformatics. Retrieved from
https://www.medicinenet.com/script/main/art.asp?articlekey=16836
http://cole-trapnell-lab.github.io/cufflinks/cuffdiff/
Wang, C., Liu, X., Gao, Y., Yang, L., Li, C., Liu, W., . . . Gao, S. (2018). Reprogramming of
http://www.chipseq.com/chromatin-immunoprecipitation/
http://had.co.nz/ggplot2/
http://r-pkgs.had.co.nz/intro.html
Wickham, H., Chang, W., Henry, L., Pederson, T. L., Takahashi, K., Wilke, C., & Woo. K. (July
https://cran.r-project.org/web/packages/ggplot2/ggplot2.pdf
Wickham, H., François, R., Henry, L., & Müller, K. (October 16, 2018). Package 'dplyr' (Version
https://cran.r-project.org/web/packages/dplyr/dplyr.pdf
Xie, Y., Vogt, A., Andrew, A., Zvoleff, A., Simon, A., Atkins, A., … Foster, Z. (February 20,
https://cran.r-project.org/web/packages/knitr/knitr.pdf