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source("http://bioconductor.org/biocLite.

R")
biocLite("ComplexHeatmap")
library(ComplexHeatmap)
library(ComplexHeatmap)
filename <- "E:/SASIKALA NRCB/Drought/R/CS_CR/CS_CR_DROUGHT.csv"
dds <- read.table(filename, stringsAsFactors = FALSE, header = TRUE)
dds <- read.table(filename, sep ="\t", quote = "", stringsAsFactors = FALSE, header
= TRUE)
head(dds)
dds <- read.table(filename, sep ="\t", quote = " ", stringsAsFactors = FALSE,
header = TRUE)
head(dds)
dds <- read.table(filename, sep =",", quote = " ", stringsAsFactors = FALSE, header
= TRUE)
dds <- read.csv(filename, header = TRUE, stringsAsFactors = FALSE)
head(dds)
dim(dds)
nrow(dds)
ncol(dds)
my_matrix <- as.matrix(dds[ ,c(2:3)])
class(dds)
class(my_matrix)
head(my_matrix)
my_matrix <- as.matrix(dds[,c(2:3)])
class(dds)
class(my_matrix)
head(my_matrix)
my_matrix
gene_info <- data.frame(gene = dds$TAIR)
gene_info
Heatmap(my_matrix)
my_matrix <- t(my_matrix)
Heatmap(my_matrix)
Heatmap(my_matrix, cluster)
Heatmap(my_matrix, cluster_)
Heatmap(my_matrix, cluster_columns = FALSE)
fontsize < - 0.6
fontsize <- 0.6
Heatmap(my_matrix, cluster_columns = FALSE, row_names_side = "left",
row_hclust_side = "left", row_names_gp = gpar(cex=fontsize) )
Heatmap(my_matrix, cluster_columns = FALSE, row_names_side = "left",
row_hclust_side = "left", row_names_gp = gpar(cex=fontsize) ,row_hclust_width =
unit(3,"cm"))
Heatmap(my_matrix, cluster_columns = FALSE, row_names_side = "left",
row_hclust_side = "left", row_names_gp = gpar(cex=fontsize) ,row_hclust_width =
unit(3,"cm"),clustering_distance_rows = "maximum", clustering_method_rows =
"ward.D")

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