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29

Combining Ontologies and Cognitive


Engineering to Innovate Electronic Health
Records
Eric Little, Ph.D
Chief Knowledge Engineer
Computer Task Group (CTG), Buffalo, NY

Abstract
Several challenges exist for implementing electronic health records (EHRs). Tantamount
to these challenges are issues surrounding the most effective ways to model medical
information and subsequently deliver that information to necessary stakeholders.
Therefore, it is important to design and implement EHR systems that are robust in terms
of their content and intuitive in terms of their use value. Ontologies can provide robust
and intuitive EHR capabilities, since ontological approaches more closely mirror the
ordinary ways in which people interact (and problem solve) with the world. In a like
manner, cognitive systems engineering – particularly the area of cognitive work analysis
(CWA) – offers empirically-based methodologies for better understanding the ways in
which people interact with data. By combining ontologies and CWA methodologies in
healthcare settings, it is possible to build systems that both model information in correct
ways and present it to those that need to utilize it in their day-to-day work environments.

Keywords: ontology, cognitive engineering, electronic health records, knowledge


management, semantics, life sciences.

1. INTRODUCTION
Ontologies are being applied to ever expanding areas of investigation to provide improved capabilities
for knowledge management, data modeling, data querying, relationship discovery/definition, and rule
manipulation [1-7]. Electronic health records (EHRs) are a growing technology, which are becoming
more prevalent throughout healthcare systems, but where challenges exist in terms of their
implementation and use [8-10]. The purpose of this paper is to provide an argument for how ontologies,
combined with certain practices from cognitive systems engineering, can be utilized , in tandem, to
provide for better structured, and easier to use, EHRs. Ontologies can be utilized to enhance EHRs in
knowledge management applications by providing: better realist models of reality, explicitly defined
semantics, more flexibility in the system’s design/use, and improved capabilities for merging
heterogeneous data sources, ultimately resulting in improved knowledge sharing, retrieval and
collaboration across medical areas [11-13]. Likewise, cognitive systems engineering practices,
particularly those in the area of work domain analysis (WDA) can be utilized to empirically study the
tasks and work environment of medical professionals and utilize that information to better design EHRs
from the standpoint of system functionality, visualization and ease of use. In this sense, ontologies
coupled with WDA can serve to augment heritage medical record systems, databases, and the like,
providing an improved overarching structure which can allow better manipulation of medical
information for a variety of user communities [14].
This approach understands ontologies as providing a metaphysical structure in the form of an
overarching upper ontology that sits above numerous domain-level sub-ontologies, providing a unified
classification system and semantic framework for all entities, attributes, processes and relations of
interest [15-17]. Transactional data specific to a given enterprise remains housed within heritage data
systems and is ingested by the ontology as needed, thereby becoming transformed into instances within
the domain represented by the ontology. This allows for improved reasoning capabilities across various
sorts of heterogeneous data, since numerous perspectives can be captured from subject matter experts
(SMEs) within the enterprise and added to the ontology over time. Subsequently, through the utilization
of WDA (and its capabilities to model tasks, user needs and the like) SME knowledge can be more
effectively utilized without the need for retooling the heritage systems themselves.

Volume 2 · Number 1 · 2010


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Eric Little 37

[5] Rosse C, Mejino JLV. A reference ontology for bioinformatics: The Foundational Model of
Anatomy. Journal of Biomedical Informatics. 2003;36:478-500.
[6] Scheuermann RH, Ceusters W, Smith B. Toward an Ontological Treatment of Disease and
Diagnosis. Proceedings of the 2009 AMIA Summit on Translational Bioinformatics, San
Francisco, California, March 15-17, 2009: American Medical Informatics Association; 2009. p.
116-20.
[7] Grenon, P., Smith, B. (2003) SNAP and SPAN: Towards Dynamic Spatial Ontology, Spatial
Cognition and Computation.
[8] Lawrence, K. Implementing EHR applications: a Canadian experience, Br J Healthcare Comput
Info Manage 2007; 24(4): 17–19. May 2007
[9] Zandieh, S. et al. Challenges to EHR Implementation in Electronic- Versus Paper-based Office
Practices, Journal of General Internal Medicine, Vol. 3, no. 6, June 2008, pp. 755-761.
[10] Goldaschmidt, P. HIT and MIS: implications of health information technology and medical
information systems, Communications of the ACM, 48 (10), Oct 2005, pp. 68-74.
[11] Smith B, Ceusters W. An Ontology-Based Methodology for the Migration of Biomedical
Terminologies to Electronic Health Records. AMIA 2005. Washington DC; 2005. p. 669-73.
[12] Ceusters W, Smith B. A Realism-Based Approach to the Evolution of Biomedical Ontologies.
Biomedical and Health Informatics: Proceedings of the 2006 AMIA Annual Symposium.
Washington DC: American Medical Informatics Association; 2006. p. 121-5.
[13] Smith B, Ashburner M, Ceusters W, et al. The OBO Foundry: coordinated evolution of ontologies
to support biomedical data integration. Nature Biotechnology. 2007;25:1251-5.
[14] Little, E. On an Ontological Foundation for Work Domain Analysis, CH 11 in Applications of
Cognitive Work Analysis (Bisantz and Burns, eds.), CRC Press, 2008.
[15] Smith, B. "Basic Formal Ontology," 2002. http://ontology.buffalo.edu/bfo/.
[16] Grenon, P. "Spatiotemporality in Basic Formal Ontology: SNAP and SPAN, Upper-Level
Ontology and Framework for Formalization, IFOMIS Technical Report Series, (http://ifomis.de),
2003
[17] Bittner, T & Smith, B. Normalizing Medical Ontologies using Basic Formal Ontology in
Kooperative Versorgung, Vernetzte Forschung, Ubiquitäre Information (Proceedings of GMDS
Innsbruck, 26-30 September 2004), Niebüll: Videel OHG, 199–201.
[18] Smith B, Ceusters W. HL7 RIM: An Incoherent Standard. In: Hasman A, Haux R, Lei Jvd, Clercq
ED, Roger-France F, editors. Studies in Health Technology and Informatics Ubiquity:
Technologies for Better Health in Aging Societies - Proceedings of MIE2006. Amsterdam: IOS
Press; 2006. p. 133-8.
[19] Rudnicki R, Ceusters W, Manzoor S, Smith B. What Particulars are Referred to in EHR Data? A
Case Study in Integrating Referent Tracking into an Electronic Health Record Application. In:
Teich JM, Suermondt J, C H, editors. American Medical Informatics Association 2007 Annual
Symposium Proceedings, Biomedical and Health Informatics: From Foundations to Applications
to Policy. Chicago, IL; 2007. p. 630-4.
[20] Smith. B. Ontology and Information Systems http://ontology.buffalo.edu/ontology(PIC).pdf,
2001.
[21] Little, E. A Proposed Methodology for Application-Based Formal Ontologies, Proceedings of the
Workshop on Reference Ontologies vs. Application Ontologies, 15-18 Sept. 2003, University of
Hamburg, CEUR-WS.org.
[22] Little, E. & Vizenor, L. Principles for the Development of Upper Ontologies in Higher-level
Information Fusion Applications, in Proceedings of the 2006 Formal Ontology for Information
Systems Conference, Baltimore, Maryland, November 9-11, 2006.
[23] Smith B. and Grenon, P. (2004) The Cornucopia of Formal-Ontological Relations, Dialectica
58, No. 3, pp. 279-296.
[24] Vicente, K.J. (1999). Cognitive work analysis: Toward safe, productive, and healthy
computerbased work. Mahwah, NJ: Lawrence Erlbaum Associates.
[25] Rasmussen, J., Pejtersen, A.M., & Goodstein, L.P. (1994). Cognitive Systems Engineering. New
York: Wiley-Interscience.

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38 Combining Ontologies and Cognitive Engineering to Innovate Electronic Health Records

[26] Bisantz, AM, & Vicente, KJ. Making the abstraction hierarchy concrete. International Journal of
Human-computer Studies, 40, 83 – 117, 1994.
[27] Naikar, N, & Sanderson, P. Evaluating design proposals for complex systems with work domain
analysis. Human Factors, 43, 529 - 542. 2001
[28] Bisantz and Burns, (eds.), (2008). Applications of Cognitive Work Analysis, CRC Press.
[29] Ceusters W, Smith B. Referent Tracking and its Applications CEUR Workshop Proceedings.
Banff, Canada: CEUR; 2007.
[30] Ceusters W, Smith B. Strategies for Referent Tracking in Electronic Health Records. Journal of
Biomedical Informatics. 2006 June;39(3):362-78.
[31] Top Quadrant: http://www.topquadrant.com/
[32] Ontoprise: http://www.ontoprise.de/en/home/
[33] Protege : http://protege.stanford.edu/
[34] BFO Version 1.1, http://www.ifomis.org/bfo/1.1
[35] Smith, B. (2006) Against Idiosyncrasy in Ontology Development, B. Bennett and C. Fellbaum
(Eds.), Formal Ontology and Information Systems, (FOIS 2006), Baltimore November 9-11.
[36] Noy, N. F. & McGuinness. (2001) Ontology Development 101: A Guide to Creating Your First
Ontology, Stanford Knowledge Systems Laboratory Technical Report KSL-01-05 and Stanford
Medical Informatics Technical Report SMI-2001-0880.
[37] Thomas Bodenheimer, MD; Kate Lorig, RN, DrPH; Halsted Holman, MD; Kevin Grumbach,
MD. Patient Self-management of Chronic Disease in Primary Care, JAMA. 2002;288:2469-2475.
[38] June Forkner-Dunn, PhD, RN. Internet-based Patient Self-care: The Next Generation of Health
Care Delivery, J Med Internet Res. 2003 Apr–Jun; 5(2): e8.
[39] OBO Foundry - http://www.obofoundry.org
[40] NCBO BioPortal - http://bioportal.bioontology.org/

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