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A Primer
Contents
Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
Instrumentation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4
Interfacing LC and MS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4
Atmospheric Pressure Ionization . . . . . . . . . . . . . . . . . . . . . . . . . 4
API-Electrospray . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
Atmospheric Pressure Chemical Ionization (APCI) . . . . . . . . . . 6
Scan and SIM . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Collision-Induced Dissociation . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
Adapting LC Methods . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Applications . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10
10,000
APCI Thermospray
1000 FAB
Particle
GC/MS Beam
2
Selectivity and Sensitivity for determining peak purity or for both.
An MS acquires mass information by
A mass spectrometer combined with a liquid
detecting ions; it offers molecular-weight
chromatograph can detect masses charac-
and structural information. The LC/MS
teristic of a compound or of a class of
can be used with analytes that do not
compounds. The system can selectively
have chromophores. The two orthogonal
detect compounds of interest in a complex
sets of data can be used to confidently
matrix, thus making it easy to find and
identify, confirm, and quantitate
identify suspected impurities at trace levels.
compounds. In addition, an LC/MS
When configured to simultaneously detect can be used as a highly selective and
a range of masses (and depending on the sensitive tunable detector. An MS
compound) LC/MS sensitivity can be com- chromatogram for a single mass often
parable to that provided by a diode-array produces an interference-free signal that
detector (DAD). Far greater sensitivity is offers high precision and low minimum
possible when the LC/MS is configured to detection limits.
detect only those masses characteristic of
Using both a UV detector and a mass
the compounds being monitored.
selective detector is more effective
than using either one alone. There are
Complementary Information
compounds (such as metabolites or
Using MS in combination with other LC degradents) for which the UV-Vis spectra
detectors gives richer information. For of two analytes will be very similar and
example, a DAD acquires data on selected it may be difficult to detect an impurity
ultraviolet (UV) and visible (Vis) wave- based on UV spectra alone. It is also
lengths and spectra. This information is possible to have impurities that have the
useful for identifying unknown peaks and same mass, especially
at lower molecular
weights. It is rare,
1200000
however, for two
800000 MS TIC components to have
400000
identical UV-Vis
spectra and mass.
4000 Figure 2 shows the
m/z ability to separate
2000
648
polymer components
12000
from an unresolved
8000
peak using the
m/z
4000 information available
376
in a mass spectrum.
300
This separation
200 m/z would not be possible
100 1325 using a conventional
UV detector.
5 10 15 20 25 30 35 40 min.
3
Instrumentation
LC/MS systems have improved dramatically over the last 20 years. Instruments have
been transformed from complex, high-cost, highly advanced research tools to low-cost,
robust, easy-to-use routine detectors. And, as the instruments have been refined, more
applications have been developed.
4
API-Electrospray surface of the liquid and forms a spray
of charged droplets. There is a concentric
Application flow of gas which assists in the nebuli-
zation process.
API-electrospray (API-ES) is useful in
analyzing samples that become multiply Desolvation
charged such as proteins, peptides, and
oligonucleotides, as well as in analyzing The charged droplets are attracted toward
samples that are singly charged, such as the capillary sampling orifice. There is a
benzodiazepines and sulfated conjugates. counterflow of heated nitrogen drying gas
which shrinks the droplets and carries
API-ES can be used to measure the away the uncharged material.
molecular weights of most polymers,
peptides, proteins, and oligonucleotides Ionization
up to 150,000 Daltons quickly and with
high mass accuracy. In biopharmaceutical As the droplets shrink, they approach a
applications, chemists use API-ES to speed point where the electrostatic (coulombic)
protein characterization, to accurately forces exceed the cohesive forces. This
identify and characterize post-translational process continues until the analyte ions
modifications, and to quickly confirm the are ultimately desorbed into the gas phase.
molecular weight of synthetic peptides. These gas-phase ions pass through the
capillary sampling orifice into the low-
Process pressure region of the ion source and the
mass analyzer, see Figure 3.
API-ES is a process of ionization followed
by evaporation. It occurs in three basic
steps: (1) nebulization and charging;
(2) desolvation and;
(3) ion evaporation.
Electrospray ions
Nebulizer gas
Nebulization
Heated nitrogen drying gas
The HPLC effluent -5,000 V
is pumped through a
Solvent spray
nebulizing needle which +
is at ground potential. +
+
+
+
+
+
+ + + + + + + + + + + + + + +
++ +
+
+ + + + -+ +
+ -+ +
+
+ -+ + ---+ +
+ -----++ ++---++
+-+ + + - - +
+ +- +
+ -- - + +++ + + + -+ +
+++ -----+ + -- - +
+
This field charges the + - -+ + + -+ + +++-- ---++
++- ++
++ -----+
+ -+ +++ +
+ -- ---++ + -+
++++ + +-- +
-+
+ --+-+ + -+ +++
+++
++--+
++ + +- + + -+-+
+ --+ + ++ +-+- +
5
Atmospheric Pressure Chemical Nebulization and Desolvation
Ionization APCI nebulization is similar to that in
API-ES. However, APCI nebulization
Application occurs in a hot (typically 250°C–400°C)
Atmospheric pressure chemical ionization vaporizer chamber. The heat rapidly
(APCI) is an ionization technique that is evaporates the spray droplets, resulting
applicable to a wide range of polar and in gas-phase HPLC solvent and analyte
nonpolar analytes that have moderate molecules, see Figure 4.
molecular weights.
Ionization
Process The gas-phase solvent molecules are
APCI, a process of evaporation followed by ionized by the discharge from a corona
ionization, is complementary to API-ES. needle. In APCI there is a charge transfer
from the ionized solvent reagent ions to
the analyte molecules in a way that is
similar to chemical ionization in GC/MS.
These analyte ions then are transported
through the ion optics to the filter and
detector.
HPLC inlet
Nebulizer gas
High wattage
heater Vaporizer
[Solv + H] + + A
Dielectric capillary
Solv + [A + H] +
+
+ +
+
+
+ + +
+ + +
+ +
+ +
+
+ +
+
+
+
+
+
6
Scan and SIM narrower the peaks, the shorter the total
scan time must be in order to get proper
Mass spectrometers can be operated in peak definition. In order to get a short total
either a scan mode or a selected ion scan time, it may be necessary to reduce
monitoring (SIM) mode (Figure 5). the scan range.
windows. No data
m/z
is collected at m/z
values other than
those specifically
time m/z sampled, so SIM
is rarely used in
SIM 1 Scan Discrete Masses
qualitative analysis.
abundance
m/z
time m/z
7
Collision-Induced Dissociation the parent ion is fragmented to a larger
degree. Electrospray CID has the
MS/MS is accomplished by a process advantage of more efficient transfer than
called collision-induced dissociation (CID) in a triple quadrupole.
in which ions break apart as a result
There are some limitations to using CID
of collisions with other molecules.
in a single quadrupole mass spectrometer.
Electrospray ionization can also be used
In a triple quadrupole or ion trap, a single
to produce CID spectra even with a single
ion can be selected and fragmented. In
quadrupole system. In many instances, a
CID with a single quadrupole instrument,
single quadrupole system can be used for
there will be multiple ions in the source
work that has traditionally required triple
that are fragmented. These other ions
quadrupoles or ion traps.
may interfere with the analyte of interest
Electrospray is a soft ionization technique by generating additional fragments. In
that produces a large number of molecular many cases, this problem can be solved
adduct ions. Adduct ions are typically by improving the chromatography to
protonated parent ions [M+H]+. These isolate the analyte (Figure 6).
ions are guided into the vacuum region by
applied voltages on lenses. By changing the
voltage, various degrees of fragmentation
may be achieved. With a low voltage, there
is little fragmentation; with higher voltages,
LC/MS
abundance
CID Q1
m/z
LC/MS/MS
abundance
Q1 Q2 (CID) Q3
m/z
Figure 6. CID with single quadrupole and triple quadrupole mass spectrometers
8
Adapting LC Methods orthogonal to the lens axis and ions are
focused into the mass filter (Figure 7).
Compared to previous LC/MS interfaces, The extraneous material is pumped away.
the API-ES and APCI interfaces are
Figure 8 shows a source that had been
relatively rugged. In many cases, existing
subjected to 600 injections with a complex
methods may be used with little or no
involatile salt solution (approximately
adaptation. Some instruments allow flow
9 g/l). Even after this abuse, the
rates of 1 to 2 ml/min without splitting.
performance was only slightly degraded.
One of the most critical factors in adapting This ruggedness makes this technique
LC methods is the choice of buffer. attractive for laboratories in which there
Involatile buffers interfere with good are many users of the system and in which
MS performance. For the best long-term large varieties of sample are commonly
perfomance, it is highly recommended handled. The instrument does not need to
that the method be modified to use a be finely adjusted for every sample.
volatile buffer. Figure 7.
HPLC inlet Orthogonal
Modern mass spec- Skimmers spray of API-
Octopole
trometer designs Nebulizer HED detector electrospray
source
incorporate a number Capillary
of features to increase
their tolerance for
involatile buffers.
In the first-generation
+ +++ + + + + + + +
9
Applications
LC/MS is suitable for many applications, from pharmaceutical development to envi-
ronmental analysis. The ability to detect a wide range of compounds has made API
techniques popular with scientists in a variety of fields.
100
Ala-Ser-Thr-Thr-Thr-Asn-Tyr-Thr 858.5
80
60
40
739.3
880.3
444.2
576.3
498.2
841.3
343.1
397.2
20
0
857.5
60
879.5
40
739.3
840.3
576.3
444.2
379.1
20
10
Determining the Molecular Weight of spectrometer measures the mass-to-charge
Green Fluorescent Protein ratio, the molecular weight of a large
molecule such as GFP can be determined
API-electrospray LC/MS can be used to
if it is multiply charged.
rapidly determine the molecular weight
of a protein. Although pure proteins can The upper part of the display in Figure 10
be done by infusion, this recombinant shows the mass spectrum of the chromato-
protein required chromatography. Green graphic peak. There is a regular pattern
flourescent protein (GFP) is a 27,000 to the spectral peaks, each one of which
Dalton polymer with 238 amino acids. It represents the molecule with a different
emits a green light when excited by UV. number of charges. The lower display
is a deconvoluted spectrum generated
Even though GFP is a very large molecule,
by the data system for the singly
a mass spectrometer with a smaller mass
charged molecule.
range can be used to determine its
molecular weight. Since the mass
100000
926.15
959.15
80000
726.25
1032.95
994.85
1074.15
60000
1118.85
1167.55
1220.45
1278.75
40000
1342.65
1413.25
1579.65
20000
1000 1500
1000000
800000
Deconvoluted spectrum
600000 MW = 26828.84
400000
200000
11
Combinatorial Chemistry Recent advances in software allow many
chemists to use the high sample capacity
Combinatorial chemistry has transformed of automated LC/MS systems. Trays are
the drug discovery process. Rather than loaded on the autosampler; the method is
creating compounds through manual specified; the instrument analyzes each
manipulations, robotics is applied to well in the plate; and the data system
generate whole classes of compounds from prints a report. Figure 11 shows a typical
sets of reagents. Reactions are typically display of a sample tray. Green dots show
done using 96-well capacity (or greater) the locations where the reaction product
plates. These plates are loaded into an is of the expected molecular weight. Red
autosampler that injects samples into the dots show where the reaction product did
LC/MS. The instrument acquires the data not have the expected molecular weight.
and produces a report showing whether A more detailed display and report of each
the compounds detected are of the position is possible.
expected molecular weight.
12
Pharmaceutical Applications a series of benzodiazepines was run using
both UV and MS detectors. The UV trace
Rapid Chromatography could not be used for quantitation, but the
of Benzodiazepines extracted ion chromatograms for the MS
could be used.
The information available in a mass
spectrum allows some compounds to be The mass spectral information provides
separated even though they are chroma- additional confirmation of the identity.
tographically unresolved. In this example, Chlorine has a characteristic pattern
because of the relative
abundance of the
mAU Rapid chromatography and isotopic information
2 UV two most common
1.5 isotopes. In Figure 12,
1 343.1
the triazolam spectrum
0.5 Triazolam
345.1 shows that the molecule
0
2 Cl has two chlorines,
350
1 2 3 4 min and the diazepam
MS spectrum shows that
300
Triazolam 285.2
it has only one.
250
Clobazam
Diazepam
200
Diazepam
Detection of
287.2
150 Alprazolam 1 Cl Degradation Products
100 Estrazolam for Salbutamol
Lorazepam 250 300 350
50 Detecting degradation
oxazepam Diazepam
0 products can often be
1 2 3 4 min difficult because they
can be structurally very
Figure 12. Benzodiazepines by API-ES similar to the original
product. If the chromo-
Norm. UV Signal and spectra MS TIC and EICs
phoric region is intact,
160 the two compounds
120 120 cannot be distinguished
80
with a UV detector.
100 m/z 346
40
m/z 282 The UV spectra for the
80 m/z 224 salbutamol and its
200 250 300 350 nm MS TIC degradation products
60
mAU are very similar. The
20
40
unique mass spectral
15
* fragments can be used
10 *
5 * * * 20 to identify the com-
*
0 pounds. Figure 13
0 shows the extracted
5 10 15 20 25 30 min ion chromatograms
2 4 6 8 10 12 14 16 min
for various masses.
Abundance MS TIC
36 pmol
2000000
1500000
1000000
500000
mAU
20 UV @ 214nm
15
10
15 20 25 30 35 40 45 min
14
Fucose Mass: 146
Residue Marker Ion: 147
50000
40000
50000
15 20 25 30 35 40 45 50 55 min
15
Clinical Applications Food Applications
mAU
UV
200
280 nm
0
80000
Trimipramine EIC
m/z 295
0
20000
EIC Thioridazine
m/z 371
0
8000
EIC Thioridazine
m/z 126
0
1 2 3 4 5 6 min
16
Scan of 2 ng
4
TIC
200000
160000
1) Aflatoxin G2 3
2
120000 2) Aflatoxin G1
1
3) Aflatoxin B2
80000
4) Aflatoxin B1
40000
315
+ +
331 [M+H] [M+H]
90 Aflatoxin G2 90 Aflatoxin B2
O O 313 O O
+
O O [M-OH] O
50 50
353
O O
OCH 3
+ 337
[M+Na] O O OCH3 287 +
[M+Na]
120 160 200 240 280 320 360 120 160 200 240 280 320
329 313
[M+H] + [M+H] +
90 Aflatoxin G1 311 90 Aflatoxin B1
O O +
[M-OH] O O
O O
50 50 O
351 285 335
O O OCH3 243
283 [M+Na]+ O O OCH3 [M+Na]
+
120 160 200 240 280 320 360 120 160 200 240 280 320
17
Environmental Applications derivativation and fluorescence detection.
The chromatogram in Figure 20 is
Carbamates by APCI-LC/MS that of a tomato extract that has been
spiked with 11 carbamates. Using APCI,
Carbamates are a class of pesticides these compounds are detected without
usually analyzed by post-column derivitization. The extracted ion chromato-
gram displays the peaks
41.5 pg/component
41.5 pg/component for the individual
compounds.
400
MS TIC
200 Detection of
Phenylurea
Herbicides
40 Aldicarb Sulfoxide m/z 132
20 Many of the phenylurea
herbicides are very
300 Carbofuran m/z 222 similar and difficult to
150
distinguish with a UV
detector (Figure 21).
40 Carbaryl m/z 202
20 Monuron and diuron
have one ring and differ
40 Promecarb m/z 226 by a single chlorine.
20 Chloroxuron has two
2.5 5 7.5 10 12.5 15 17.5 min chlorines and a second
benzene ring attached
Figure 20. Carbamates by APCI to the first by an
oxygen. The UV-Vis
UV shows class; MS identifies species 233.1 spectra are similar for
Norm. Diuron diuron and monuron,
500
400 199.2
but different for
300 Monuron
chloroxuron. Each
200 of these compounds
100 291.2 has a distinct mass
0 Chloroxuron
spectrum. The standards
200 250 300 350 nm
100 200 300 400 500 were run with an
*
API-electrospray LC/MS
mAU
100 system.
80
* *
60
40
20
5 10 15 20 25 min
18
19
Notes
20
21
Information, descriptions and
specifications in this publication are
subject to change without notice.
Copyright © 1998
Hewlett-Packard Company
All Rights Reserved.
The HP LC/MSD system has Reproduction, adaption or translation
without prior written permission is
been designed and
prohibited, except as allowed under
manufactured under a NATIONAL
ACCREDITATION the copyright laws.
quality system that has OFCERTIFICATION
BODIES
Printed in the USA 10/98
been registered to ISO 9001. Certificate No: FS25109
(23) 5968-2543E