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Article history: Fusarium damage in wheat reduces the quality and safety of food and feed products. In this study, the
Received 26 April 2010 use of hyperspectral imaging was investigated to detect fusarium damaged kernels (FDK) in Canadian
Received in revised form wheat samples. Eight hundred kernels of Canada Western Red Spring wheat were segregated into three
23 September 2010
classes of kernels: sound, mildly damaged and severely damaged. Singulated kernels were scanned with
Accepted 4 October 2010
a hyperspectral imaging system in the visible-NIR (400–1000 nm) wavelength range. Principal compo-
nent analysis (PCA) was performed on the images and the distribution of PCA scores within individual
Keywords:
kernels measured to develop linear discriminant analysis (LDA) models for predicting the extent of fusar-
Wheat
Fusarium damage
ium damage. An LDA model classified the wheat kernels into sound and FDK categories with an overall
Spectral imaging accuracy of 92% or better. Classification based on six selected wavelengths was comparable to that based
on the full-spectrum data.
Crown Copyright © 2010 Published by Elsevier B.V. All rights reserved.
0168-1699/$ – see front matter. Crown Copyright © 2010 Published by Elsevier B.V. All rights reserved.
doi:10.1016/j.compag.2010.10.004
108 M.A. Shahin, S.J. Symons / Computers and Electronics in Agriculture 75 (2011) 107–112
NIR reflectance to measure DON concentration in single kernels surements of wheat kernels. The imaging system consisted of
(r2 = 0.64, SE = 44 ppm). Using NIR spectroscopy of individual ker- a prism-grating-prism spectrograph (ImSpector V10E; Specim,
nels, sound and FDK were segregated with high accuracy (95–97%) Oulu, Finland), a high-resolution 14-bit CCD camera (PCO Imaging,
under controlled laboratory conditions (Delwiche and Hareland, Germany), a motorized C-mount focusing lens, and a personal com-
2004). In contrast, test results using this technique on commer- puter. The motorized lens assembly moved in front of the camera
cial samples under commercial sorting operational conditions had allowing for imaging stationary samples. Two 250 W quartz-
a much lower accuracy (50%; Delwiche, 2008). Peiris et al. (2009) tungsten-halogen lamps were used for sample illumination. Power
examined NIR absorbance characteristics of various concentra- to each lamp was regulated through a radiometric power supply
tions of DON as well as of sound and fusarium damaged single (M-69931; Newport Oriel, Stratford, CT, USA).
wheat kernels. This study indicated that NIR spectrometry in the
1000–2100 nm range could estimate DON levels in kernels hav- 2.3. Image acquisition and calibration
ing more than 60 ppm DON. However, further investigations were
required to detect DON in asymptomatic kernels. For imaging, singulated wheat kernels, in batches of 24–36 per
Hyperspectral imaging in the shortwave infrared range image, were placed crease-down on a neutral-grey plastic board
(1000–2500 nm) has shown potential for detecting fungal con- and hyperspectral images (also known as hypercubes) were col-
tamination in wheat (Zhang et al., 2007; Singh et al., 2007) and lected in the diffuse reflectance mode. Each hypercube contained
fusarium damage in maize corn (Williams et al., 2010) and wheat three rows of kernels: sound (bottom row), mildly damaged (mid-
(Polder et al., 2005). The extremely high cost of cameras sensitive dle row), and severely damaged (top row). Image size was 800 by
in the shortwave infrared range has been a limiting factor in the 400 pixels by 218 wavebands within 400–1000 nm range at a spec-
development of commercially viable application systems in this tral resolution of approximately 2.75 nm and a spatial resolution of
waveband range. Berman et al. (2007) have shown that accuracy of 0.028 mm per pixel in both x and y directions. The exposure time
fungal detection in wheat grain with hyperspectral imaging over was set at 60 ms. Each kernel was approximately 1800 pixels in
the 420–1000 nm wavelength range could be just as good as over area.
the full spectral range of 420–2500 nm. Recently, the use of high- Dark current and white light reference images were collected
power bichromatic light emitting diodes (LEDs) emitting at red and before imaging each sample to calibrate spectra at each pixel as
green wavelengths have been reported to achieve moderate levels percent reflectance value. A polytetrefluoroethylene panel with
of overall accuracies (50–85%) for detection of fusarium damaged 99% reflectance (Spectralon, Labsphere, USA) was used to collect
wheat kernels (Delwiche, 2008; Yang et al., 2009). white light reference images. Dark current response images were
The objectives of this study were: (a) to investigate the collected with the lamp off and a cap covering the focusing lens.
use of hyperspectral imaging in the visible-NIR spectral range Calibrated reflectance images (R) were calculated using Eq. (1).
(400–1000 nm) for the detection of varying degrees of fusarium
Iraw − Idark
damage in wheat, and (b) to identify a reduced set of wave- R= (1)
Iwhite − Idark
lengths/wavebands to be used in a future development of a low
cost imaging system. where, Iraw is the non-calibrated original image of a sample, Iwhite is
the image of the white reference, and Idark is the dark current image.
Calibrated hypercubes were subset to keep 181 bands between
2. Materials and methods
450 and 950 nm for further analyses. Data below 450 nm or above
950 nm were excluded due to the presence of excessive noise in
2.1. Samples
this range.
Fig. 1. (a) True color representation of a hyperspectral image of CWRS wheat kernels with varying degree of fusarium damage—sound (bottom row), mildly damaged (middle
row) and severely damaged (top row). (b) Spectral response of sound (SND), mildly damaged (MLD) and severely damaged (SVR) kernels and image background (BKG). (c)
Mask image showing kernel blobs separated from the image background. (d) Normalized spectral response of sound (NSND), mildly damaged (NMLD) and severely damaged
(NSVR) wheat kernels.
Table 1a Table 1b
Feature selection for classification into sound (SND) and FDK categories. Feature selection for classification into mild (MLD) and severe (SVR) fusarium dam-
age categories.
Variable in the modela Partial R2 p-Value Wilk’s Lambda
Variable in the modela Partial R2 p-Value Wilk’s Lambda
None – – 1.000
sdpc1 0.3722 <0.0001 0.6278 None – – 1.000
mpc2 0.3366 <0.0001 0.4165 mpc3 0.3621 <0.0001 0.6379
sdpc6 0.0686 <0.0001 0.3879 mpc2 0.0893 <0.0001 0.5809
sdpc3 0.0286 <0.0001 0.3767 mpc6 0.0463 <0.0001 0.5541
mpc5 0.0248 <0.0001 0.3675 mpc4 0.0753 <0.0001 0.5123
mpc4 0.0113 0.0026 0.3633 mpc1 0.0773 <0.0001 0.4727
mpc1 0.0126 0.0015 0.3587 sdpc4 0.0125 0.0264 0.4668
mpc3 0.0117 0.0023 0.3545 sdpc1 0.0259 0.0013 0.4547
mpc6 0.0071 0.0179 0.3520 mpc5 0.0132 0.0228 0.4487
a
sdpc2 0.0069 0.1018 0.4456
mpc1 to mpc6: mean values of the 1st 6 principal component scores computed
a
over a single wheat kernel. sdpc1 to sdpc6: standard deviation values of the 1st 6 mpc1 to mpc6: mean values of the 1st 6 principal component scores computed
principal component scores computed over a single wheat kernel. over a single wheat kernel. sdpc1 to sdpc6: standard deviation values of the 1st 6
principal component scores computed over a single wheat kernel.
fully segregate wheat kernels into target fusarium damage classes. Actual class Number of kernels classified into class
Accurate kernel classification required a combination of PC score
Calibration set Validation set
features. The stepdisc procedure selected a set of nine significant
features for the sound-damaged (SND–FDK) kernel classification MLD SVR Total Accuracy % MLD SVR Total Accuracy %
(Table 1a). Six mean score features (mpc1–mpc6) and three stan- MLD 90 10 100 90 88 12 100 88
dard deviation features (sdpc1, sdpc3, sdpc6) were selected. Spatial SVR 15 85 100 85 16 84 100 84
variability or standard deviation of PC1 (sdpc1) contributed the Total 105 95 200 87.5 104 96 200 86
most towards the target SND–FDK classification followed by the Bold values indicate correct classification.
M.A. Shahin, S.J. Symons / Computers and Electronics in Agriculture 75 (2011) 107–112 111
Fig. 2. Score images of the first four principal components (PC1–PC4) of the image of CWRS kernels shown in Fig. 1a.
0.5 Table 3b
PC1 PC2 PC3 PC4 PC5 Mild (MLD) and severe (SVR) classification of fusarium damaged kernels based on
selected PCA score features extracted from 6 selected wavebands (484, 567 684,
817, 900, 950 nm).
0.25
Actual class Number of kernels classified into class
-0.5
450 550 650 750 850 950 lem using a low cost imaging system built around a monochrome
Wavelength, nm digital camera and a set of optical filters in a motorized filter
wheel. For industrial uptake, the lower cost of such a multi-spectral
Fig. 3. Loadings (eigenvectors) of the first five principal components (PC1–PC5); approach would be appealing. Such a system would initially have
Wavelengths marked with circles approximate the behaviour of the five loading the potential to identify samples requiring further chemical analy-
functions. sis for toxin contamination. Subsequent studies in this laboratory
will continue to explore this possibility.
six selected wavebands (484 nm, 567 nm, 684 nm, 817 nm, 900 nm
and 950 nm), the overall classification accuracy for SND and FDK
4. Summary and conclusions
categories (Table 3a) and MLD and SVR categories (Table 3b) was
92% and 84% respectively on the validation dataset. Kernel classifi-
A visible-NIR hyperspectral imaging system was used to detect
cation based on the six selected wavebands was comparable to that
fusarium damage in CWRS wheat over the 450–950 nm range.
based on the full-spectrum (450–950 nm). These results demon-
Using principal component analysis (PCA), the hyperspectral image
strate that two levels of FDK in CWRS wheat can be detected with
data were reduced to 10 PCA score images and linear discriminant
six selected wavebands.
analysis (LDA) models developed for kernel classification in two
The fact that a few specific wavebands show promise for the
stages, sound and damaged and then subsequently the damaged
detection of FDK suggests that it may be possible to solve this prob-
kernels into mild and severe. Based on the results of this research,
it can be concluded that hyperspectral imaging over 450–950 nm
Table 3a
can be used to detect varying degrees of fusarium damage in CWRS
Sound (SND) and FDK classification results for an LDA model based on selected
PCA score features extracted from 6 selected wavebands (484, 567 684, 817, 900, wheat. Using LDA, sound and damaged kernels can be classified
950 nm). with an overall accuracy of 92% and the extent of fusarium damage
can be predicted with an accuracy approaching 86%. A set of six
Actual class Number of kernels classified into class
wavebands can be used to achieve accuracies similar to those with
Calibration set Validation set the entire range of 450–950 nm.
SND FDK Total Accuracy % SND FDK Total Accuracy %
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