Académique Documents
Professionnel Documents
Culture Documents
Definition:
Soil organic matter consists of a whole series of products which
range from undecayed plant and animal tissues through ephemeral products
of decomposition to fairly stable amorphous brown to black material bearing
no trace of the anatomical structure of the material from which it was
derived and it is the latter material that is normally defined as ‘humus’.
Humus:
According to Buckman and Brady,
Humus is a complex and rather resistant mixture of
brown or dark brown amorphous and colloidal organic substances modified
from the original tissues or synthesized by the various soil organisms.
Non- humified & humified organic matter:
Soil organic matter consists of two major types of compounds,
unhumified substances and the humified remains of plant and animal tissues.
The non-humified organic matter is composed of compounds
released during decomposition in the original or slightly modified form.
Although numerous organic compounds are present in the plant tissue, only
a few exist in soils in detectable amounts after their release in soils. They are
primarily-
i. carbohydrate
ii. amino acids and proteins
iii. lipids
iv. nucleic acids
v. lignin and
vi. organic acids
Humified organic matter or humic matter is a group of compounds
that includes humic acids, fulvic acids, hymotomelanic acid and humans.
This humified soil organic fraction is also known as ‘humus’ or currently as
‘humic compounds’. Today humic compounds are defined as amorphous,
colloidal poly dispersed substances with yellow to brown –black color and
high molecular weights.
Sources of organic matter:
1. The original/primary source of the soil organic matter is plant
tissue.
Under natural conditions, the tops & roots of tress, shrubs,
grasses ad other native plants annually supply large quantities
of organic residues. Even with harvested crops, one tenth to one
third of the plat tops commonly fall to the soil and remain there
or are incorporated into the soil.
2
Water
75%
Dry matter
25%
Carbon42%
45% cellulose
Hydrogen 8%
5%su
2% fat
8%pr 8%ash
18%cellulose
(CHOH) 3 (CHOH)3
H-C-OH HO-C-H
CH2OH CH2OH
D-Glucose L-Glucose
5
H OH
H- C-OH
OH-C-H
O
H- C-OH
CH2OH
α- D- glucose
CHO
(CHOH) 3
H-C-OH
CH2OH
D-glucose
H OH
H- C-OH
- β-D-glucose
OH-C-H
O
H- C-OH
CH2OH
6
7
8
9
H O
H- C-OH
OH-C-H
O
H- C-OH
CH2OH
Glucose (aldose)
H OH
11
H- C=O
OH-C-H
O
H- C-OH
CH2OH
Fructose (Kelose)
The term carbohydrate indicates that these compounds
could be represented by hydrates of carbon: Cx(H2O)y. But several
compounds exist with properties of carbohydrates which do not have the
required ratio of hydrogen to oxygen 0f 2:1; e.g. the sugar deoxyribose
(C5H10O4), which is a constituent of DNA, a component of every plant cell.
Some of the carbohydrates may also contain N and S, and their formulas do
not agree with Cx(H2O)y.
Approximately 5 to 16% of the soil organic matter is in
the form of carbohydrates.
Sources:
• Soil carbohydrates are derived from plant residues and from the
remains of microorganisms and animals.
• A major portion of the soil organic matter is derived from the added
and residual vegetative material.
• Animals contribute a smaller portion of soil carbohydrates.
• Minerals contribute indirectly to soil carbohydrates.
• Soil bacteria are capable of producing polysaccharides containing all
sugars found in soils except arabinose and galactose.
Classification:
Carbohydrates can be divided into three groups:
i. Monosaccharide
ii. Oligosaccharides
iii. Polysaccharides
The properties of these carbohydrates change significantly with
increasing molecular complexity.
12
R-CH-COOH
Proteins are complex combinations of amino acids. 21
amino acids are usually found as protein constituents. The protein is formed
by the linkage of many amino acids through the amino & carboxyl group.
H O H H O
H2N-C-C-OH+H-N-C-C-OH
HO H HO
H2N-C-C-N-C-C-OH +H2O
13
H H
(Peptide bond)
Both amino acids and proteins are major sources of nitrogen compounds in
soils. They are more difficult to breakdown than carbohydrates because of
their size and complexity in molecular structure.
They are amphoretic in nature, and consequently react with acids and bases.
At the isoelectric point, amino acids behave as zwilter ions; in other words,
behave as cations & anions (Tan 1993). In acid soils, the amino acids are
positively charged and behave as cations; whereas in basic soils they are
negatively charged and behave as anions.
O O
R-CH-C-O-H R-CH-C-Oˉ
NH2 NH3
In acid medium: O O
R-CH-C-Oˉ + H+ R-CH-C-OH
NH3 NH3
In basic medium: O O
NH3 NH2
Decomposition of amino acids & proteins:
The main reaction process for the decomposition of three
compounds is hydrolysis. Hydrolysis of proteins, brought about by
proteinases and peptides, of soil microorganisms, results in cleavage of
peptide bonds, releasing in this way produces the amino acids. The latter
compounds are broken down further into NH3 by the enzymes called amino
acid dehydrogenases and oxidases.
Schematically the main pathway of decomposition can be
represented as follows:
Proteins—Peptides---amino acids---NH3
The decomposition reaction of proteins as described
above is frequently called deamination or putrefication (Gartner, 1949;
14
NH2
Anaerobic deamination may result in
i. Deamination or reduction, and ii. decarboxylation, which can be
written as follows:
Deamination or reduction:
R-CH-COOH+H2-------R-CH2-COOH+ NH3
NH2
Decarboxylation:
R-CH-COOH-------R-CH2-NH2 +CO2
NH2
(Amino acid) (Amine)
• Lipids:
Lipids are heterogeneous compounds of fatty acids, waxes,
and oils. The term lipid does not imply a particular chemical structure, as
with amino acids. The name is used to describe substances that are soluble in
fat solvents, such as ether, chloroform, or benzene.
Lipids are usually classified into three groups:
1. Simple lipids: These include natural lipids, fats, oils and
waxes.
2. Compound lipids: Phosphatides, glycolipids, sulfolipids and
terpenoid lipids, including carotenoids, belong to this group.
3. Derived lipids: these are lipids derived from hydrolysis of
simple & compound lipids. They include fatty acids, alcohols and sterols.
The fatty acids can be unsaturated fatty acids (e.g. oleic acid
C18H34O12) palm oil or coconut oil is rich in palmitic acids. Cholesterol is an
example of a sterol, which upon UV radiation will form vitamin D.
The basic component of lipids is glycerol, C3H8O3 or other
alcohols; glycerol is a trihydroxy alcohol with the following structure:
H2C-OH
15
HC-OH
H2C-OH
• Lignin
Lignin is a system of thermoplastic highly aromatic polymers,
derived from coniferyl alcohol or guaiacyl propane monomers.
Plant lignin can be divided into three types of basic monomers:
i. Lignin from softwood- coniferyl alcohol, derived mostly from
softwood or coniferyl plants.
ii. Lignin from hardwood- sinapyl alcohol, derived from hard
wood.
iii. Lignin from grasses, bamboo or palm. Or grass lignin-
coumaryl alcohol, derived from grasses and bamboos.
These basic monomers form large, complex polymer
(polymeric molecules). A hypothesis of a more systematic
arrangement of the basic monomers into lignin is presented by
Tan (1993). Many of the C atoms are connected to the
16
17
Such a combination can also take place with the other types of
monomers, whereas the linkages can continue in many
directions.
The ultimate source for formation of lignin is carbohydrates or
intermediate products of photosynthesis related to
carbohydrates. In the growth of woody plants, carbohydrates
are synthesized first. The formation of lignin then begins, and
the spaces existing between the cellulose fibers are gradually
filled with lignified carbohydrates. This process is called
lignification and serves several functions:
18
Humic acid:
a. The conception of ‘humic acids’ at the
present time is a group of substances
having a form of structure although not
completely identical with one another. In
the last century, humic acids were
regarded as products of the oxidation and
dehydration of single substances, mainly
carbohydrates. Further investigations
have shown that several substances
participate in the formation of humic
acids.
b. It is high molecular weight fraction of
humic matter.
24
3. Hymatomelanic acid:
a. hymatomelanic acid is the alcohol soluble part of
humic acid
b. in Tyrin’s opinion, hymatomelanic acid represents a
complex mixture of substances, which are humic acid derivatives, some
being more oxidized and others more reduced.
c. hymatomelanic acid, contain methoxyl, carboxyl and
hydroxyl groups.
d. they have a characteristically high carbon content
(more than 60%).
e. according to Kukharenko, hymatomelanic acids can be
formed both by synthesis from the products of decomposition of organic
residues and also during the oxydative-hydrolytic destruction of humus
substances by oxygen and moisture.
f. like huic acids, hymatomelanic acids are heterogenous.
Consequently, it is considered that hymatomelanic acids
are not an independent group of humus substances but an alcohol-soluble
fraction of humic acids. Soluble in alkali; insoluble in acid & water.
4.Humins :
a. Humin is insoluble in water, alcohol, acids and alkali.
b. It is highest in molecular weight.
c. Darkest in color.
d. Most resistant to microbial attack.
e. Humus substances not extracted from decalcified soil
during treatment with alkali solutions are placed in the humin group.
f. In the majority of soils. The humin group is
represented mainly by humic acids; their loss of the capacity for dissolving
30
in alkali solutions is due mainly to their stable linkage with the mineral part
of the soil.
g. In soils, the humin group may be partly represented by
combined plant residues.
h. Humins participate in the formation of a water-stable
structure.
I. Humin constitutes a concentration of considerable
amounts of nitrogen, phosphorus, sulfur and other elements, forming a
reserve which is gradually drawn into cycles of mineralization and
mobilized for plant nutrition.
j. it is soluble in hot alkali.
Functional groups in humic substances:
The functional groups present in humic substances are
given below:
O
R-C-Oˉ + H+
ii. Hydroxyl (phenol or alcohol group) R-OH R-Oˉ
+H+ [Ar-OH Ar-Oˉ +H+]
iii. Carbonyl (keto or ester group) R=O R-Oˉ
iv. Amide (ammonium group) R-NH2 R-NH3+
or, R-NHˉ (depends on pH value) R-NH3(low pH), R-NHˉ (high pH)
Properties of humus:
Humus possesses certain properties that differentiate it from
undecomposed plant and animal residues. Some of its important properties
are as under:
a. humus shows colloidal properties
b. Humus (organic colloid) is a non crystalline organic
substance.
c. It consists of very large organic molecules, whose
chemical composition varies considerably, but
generally contains 40 to 60% C, 30 to 50% O, 0.3 to
7% H, and 1 to 5% N.
d. The molecular weight of humic acids, a major type of
colloidal humus, ranges from 10, 0000 to 100,000
g/mol.
31
4. Biological degradation:
It is a natural and mild process. This is a method by
which fulvic acid is decomposed with the aid of microorganisms (e.g.
penicillium sp, Aspergillus sp, and Trichoderma sp- the most common 3
fungi found in soil).
34
Hypothesis of Kononova(1961):
The role of microorganisms as sources of
polyphenols has been emphasized by kononova in 1966. He gives a detailed
account of research in which histological microscopic techniques and
chemical methods were used to study the decomposition of plant residues.
Stages leading to the formation of humic
substances were postulated to be as follows:
Stage-1:
Fungi attack simple carbohydrates and parts of the protein and
cellulose in the medullary rays, cambium and cortex of plant residues. [ I.e.
the interval structure of plant tissue is attacked by fungi.]
Stage2:
Cellulose of the xylem is decomposed by aerobic myxobacteria.
Polyphenols synthesized by the myxobacteria, are oxidized to quinines by
polyphenoloxidase enzymes, and the quinines subsequently react with N-
compounds to form brown humic substances.
Stage-3:
Lignin is decomposed, phenols released during decay also serve
as source materials for humus synthesis.
The relative importance of lignins and microorganisms as
sources of polyphenols for humus synthesis is unknown; this may depend
upon environmental conditions in the soil. Because lignins are relatively
resistant to microbial decomposition and a major plant constituent, they are
sometimes considered to be the major, if not the primary, source of phenolic
units.
Some of the microscopic fungi that decompose lignin in soil,
produce humic acid like substances in which the phenolic units originate
from both lignin and through biosynthesis by fungi.
Modern view of humus formation:
It is generally accepted that humic acid and fulvic acids
are formed by a multiple stage processes that includes,
1. Decomposition of all plant components including lignin,
into simpler monomers;
2. Metabolism of the monomers with an accompanying
increase in the soil biomass’
3. Repeated recycling of the biomass C (and N) with synthesis
of new cells; and
4. Concurrent polymerization of reactive monomers into high
molecular weight polymers. (Flaig & Kononova, 1966).
37
noticed from both NMR and infrared analysis. A complex structure can also
be built by combining several units of the basic molecule, or adding other
compounds to the aromatic nucleus.
So, the two main opinions of Tan are,
1. Carbohydrates are directly attached to the structure,
and
2. There is no existence of phenolic group.
Colloidal nature of humus:
The colloidal characteristics of humus are as follows:
1. The humic compounds are hydrophobic in nature.
2. The tiny colloidal humus particles (micelles) are composed
of carbon, hydrogen, and oxygen (probably in the form of
polyphenols, polyquinones, polyurinoids and
polysaccharides).
3. The surface area of humus colloids per unit mass is very
high, generally exceeding that of silicate clays. The surface
area of humus colloid ranges from 500-800 m²/g.
4. The colloidal humus must possess charge either positive or
negative. Mostly negative charges are dominant under
prevailing condition of pH.
5. At high pH values the cation exchange capacity (C.E.C) of
humus on a mass basis (150-300 c mol c /Kg) for exceeds
that of most silicate clays.
6. The water-holding capacity of humus is very high and it, on
a mass basis is 4-5 times greater than that of the silicate
clays.
7. Humus has a very favorable effect on aggregate formation
and stability.
8. The black color of humus tends to distinguish it from most
of the other colloidal constituents in soils.
9. Cation exchange reactions with humus are qualitatively to
those occurring with silicate clays.
10.Humus colloid acts as a buffer.
Function/significance of humus:
1. Store house of nutrients: Humus provides a store house for
the exchangeable and available cations- K+, Ca²+, Mg²+.
Ammonium fertilizers are also prevented from leaching loss
because humus holds ammonium in an exchangeable
available form.
42
H3-C-COOˉ+OHˉ H3C-C-COOˉ+H2O
H H
That is, humic compound is acting as anion when acid is added, the
dissociated carboxyl group (COOˉ) accepts the proton (when pH=3).
NH3 NH3+
H3-C-COOˉ+H+ H3C-C-COOH
H H
5. Plant & animal residues are the 5. Humus comes from the organic
sources of this. matter.
6. All the portions are not amorphous 6. Amorphous & not crystalline.
& crystalline.
7. All the portions have no adsorptive 7. It has adsorptive power.
power.
8. Does not possess any functional 8. Possesses several functional
group. groups.
9. Does not have C.E.C. 9.Has high C.E.C.
10. C/N ratio is not constant. 10. C/N ratio is more or less
constant.
11. It has definite recognizable 11. It has no definite recognizable
structure. It contains- structure. It contains-
Cellulose-20-50% Cellulose-4%
Hemicellulose-10-28% Hemicellulose-7%
Lignin-10-36% Lignin-45%
Peat Muck
1. An organic soil that contains more 1. An organic soil that contain 20-
than 50% organic matter & the 50% organic matter & the organic
organic matter is partially decayed or matter is completely decomposed, is
non-decayed, is called peat. called muck.
2. The kind of plant in the peat can 2. The plant materials of muck
be identified. cannot be identified.
3. Peat soils are coarse/fine textured 3. Muck soils are quite fine textured
depending on the nature of deposited as the original plant materials are
plant residues. broken down.