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1. Xu P., Wang J., Wang JT., Cui R., Li Y, Zhao Z., Ji P., Zhang Y., Li J., Sun X.

Generation of the first BAC-based physical map of the common carp genome. BMC
Genomics, 2011, 12:537doi:10.1186/1471-2164-12-537

2. Hale M., Xu P., Scardina J., Wheeler P., Thorgaard G., Nichols K. Differential gene
expression in male and female rainbow trout embryos prior to the onset of gross
morphological differentiation of the gonads. BMC Genomics, 2011,
doi:10.1186/1471-2164-12-404

3. Wan Y., Zhang Y., Ji P., Li Y., #Xu P., Sun X. Molecular characterization of CART,
AgRP, and MC4R genes and their expression with fasting and re-feeding in common
carp (Cyprinus carpio) Molecular Biology Reports, 2011, Epub ahead, DOI:
10.1007/s11033-011-0970-4

4. Xu P., Li J., Li Y., Cui R., Wang J., Wang J., Zhang Y., Zhao Z., Sun X. Genomic
insight into the common carp (Cyprinus carpio) genome by sequencing analysis of
BAC-end sequences BMC Genomics 2011, 12:188

5. Li Y., #Xu P., Zhao Z., Wang J., Zhang Y., Sun X. Construction and Characterization
of the BAC Library for Common Carp Cyprinus Carpio L. and Establishment of
Microsynteny with Zebrafish Danio Rerio. Marine Biotechnology 2011, 13(4):706-12

6. Zhang Y., Lu C., Cao D., Xu P., Wang S., Li H., Zhao Z., Sun X. Rates and patterns of
microsatellite mutations in common carp (Cyprinus carpio L.) Zoological Research
2010, 31(5) 561-564 DOI: 10.3724/SP.J.1141.2010.05561

7. Zhang Y., Xu P., Lu C., Kuang Y., Zhang X., Cao D., Li C., Chang Y., Hou N., Li H.,
Wang S., Sun X. 2010.Genetic linkage mapping and analysis of muscle fiber-related
QTLs in common carp (Cyprinus carpio L.) Marine Biotechnology , Epub ahead

8. Xu, P., McIntyre, L., Wheeler, P., Thorgaard, G., Nichols, K. Transcriptome profiling
of embryonic development rate in rainbow trout advance backcross introgression lines,
Marine Biotechnology, 2010, DOI: 10.1007/s10126-010-9283-1

9. Wang, S., Peatman, E., Abernathy, J., Waldbieser, G., Lindquist, E., Richardson, P.,
Lucas, S., Wang, M., Li, P., Thimmapuram, J., Liu, L., Vullaganti, D., Kucuktas, H.,
Murdock, C., Small, B., Wilson, M., Liu, H., Jiang, Y., Lee, Y., Chen, F., Lu, J., Wang,
W., Xu, P., Somridhivej, B., Baoprasertkul, P., Quilang, J., Sha, Z., Bao, B., Wang, Y.,
Wang, Q.. 2010. Assembly of 500,000 inter-specific catfish expressed sequence tags
and large scale gene-associated marker development for whole genome association
studies. Genome Biology 11(1): R8.
10. Liu, H., Jiang, Y., Wang, S., Ninwichian, P., Somridhivej, B., Xu, P., Abernathy, J.,
Kucuktas, H., Liu, Z. Comparative analysis of catfish BAC end sequences with the
zebrafish genome BMC Genomics, 2009, 10:592

11. Kucuktas, H., Wang, S., Li, P., He, C., Xu, P., Sha, Z., Liu, H., Jiang, Y., Baoprasertkul,
P., Somridhivej, B., Wang, Y., Abernathy, J., Guo, X., Liu, L., Muir, W., Liu, Z.
Construction of Genetic Linkage Maps and Comparative Genome Analysis of Catfish
Using Gene-associated Markers. Genetics. 2009, Genetics 181:1649-1660.

12. Peatman, E., Terhune, J., Baoprasertkul, P., Xu, P., Nandi, S., Wang, S., Somridhivej,
B., Kucuktas, H., Li, P., Dunham, R., Liu, ZJ. Microarray analysis of gene expression in
the blue catfish liver reveals early activation of the MHC class I pathway after infection
with Edwardsiella ictaluri. Molecular Immunology 2009, 45: 553-566

13. Wang, S., Sha, Z., Sonstegard T., Liu, H., Xu, P., Somridhivej, B., Peatman, E.,
Kucuktas, H., and Liu, Z. Quality assessment parameters for EST-derived SNPs from
catfish., BMC Genomics 2008, 9:45

14. Sha, Z., Xu, P., Takano, T., Terhune, J., Liu, Z. The warm temperature acclimation
protein Wap65 as an immune response gene: Its duplicates are differentially regulated
by temperature and bacterial infections, Molecular Immunology. 2008, 45:1458-1469

15. Xu, P., Wang, S., Liu, L., Thorsen, J., Liu, Z. A BAC-based physical map of the
channel catfish genome. Genomics. 2007, 90:380-388

16. Somridhivej, B., Wang S., Sha Z., Liu H., Quilang J., Xu P., Li P., Liu Z.J.
Characterization, polymorphism assessment, and database construction for
microsatellites from BAC end sequences of catfish: a resource for integration of linkage
and physical maps. Aquaculture. 2008,275:76-80

17. *Baoprasertkul P., *Xu P., Peatman E., Kucuktas H., Liu Z. Divergent Toll-like
receptors in catfish (Ictalurus punctatus): TLR5S, TLR20, TLR21. Fish and Shellfish
Immunology. 2007, 23: 1218-1230.

18. Peatman, E., Baoprasertkul, P., Terhune, J., Xu, P., Nandi, S., Kucuktas, H., Li, P.,
Wang, S., Somridhivej, B., Dunham, R., Liu, Z. Expression analysis of the acute phase
response in channel catfish (Ictalurus punctatus) after infection with a Gram-negative
bacterium. Developmental and Comparative Immunology 2007, 31:1183-1196

19. *Wang, S., *Xu, P., Thorsen, J., Zhu, B., de Jong, P., Waldbieser, G., Liu, Z.
Characterization of a BAC library from channel catfish Ictalurus punctatus: indications
of high rates of evolution among teleost genomes. Marine Biotechnology. 2007,
9:701-711
20. Abernathy, J.W., Xu, P., Li, P., Xu, D., Kucuktas, H., Klesius, P., Arias, C., Liu, Z.
Generation and analysis of expressed sequence tags from the ciliate protozoan parasite
Ichthyophthirius multifiliis. BMC Genomics. 2007

21. Li, P., Peatman, E., Wang, S., Feng, J., He, C., Baoprasertkul, P., Xu, P., Kucuktas, H.,
Nandi, S., Somridhivej, B., Serapion, J. et al. Towards the catfish transcriptome:
development of molecular tools from 31,215 catfish ESTs. BMC Genomics. 2007

22. Nandi, S., Peatman E., Xu P., Wang S., Li P., Repeat structure of the catfish genome: a
genomic and transcriptomic assessment of Tc1-like transposon elements in channel
catfish (Ictalurus punctatus). Genetica. 2007, 131: 81-90

23. *Xu P., *Wang S., Liu L., Peatman E., Somridhivej B., Thimmapuram J., Gong G., Liu
Z. Channel catfish BAC-end sequences for marker development and assessment of
syntenic conservation with other fish species. Animal Genetics. 2006, 37: 321-326

24. Wang Q., Wang Y., Xu P., Liu Z. NK-lysin of channel catfish: Gene triplication,
sequence variation, and expression analysis. Molecular Immunology. 2006,
43:1676-1686

25. Peatman E., Bao B., Xu P., Baoprasertkul P., Brady Y., Liu Z. Catfish CC
chemokines: genomic clustering, duplications, and expression after bacterial infection
with Edwardsiella ictaluri. Molecular Genetics and Genomics 2006, 275:297-309

26. Bao B., Peatman E., Xu P., Baoprasertkul P., Wang G., Liu Z. Characterization of 23
CC chemokine genes and analysis of their expression in channel catfish (Ictalurus
punctatus). Developmental and Comparative Immunology 30:783-796

27. Bao, B., Peatman, E., Xu, P., Li, P., Zeng, H., He, C., Liu, Z. The catfish
liver-expressed antimicrobial peptide 2 (LEAP-2) gene is expressed in a wide range of
tissues and developmentally regulated. Molecular Immunology. 2006, 43:367-377.

28. Xu P., Bao B., He Q., Peatman E., He C., Liu Z. Characterization and expression
analysis of bactericidal permeability-increasing protein (BPI) antimicrobial peptide gene
from channel catfish Ictalurus punctatus Developmental & Comparative Immunology.
2005, 29(10):865-78.

29. Chen L., He C., Baoprasertkul P., Xu P., Li P., Serapion J., Waldbieser G., Wolters W.,
Liu Z. Analysis of a catfish gene resembling interleukin-8: cDNA cloning, gene
structure, and expression after infection with Edwardsiella ictaluri. Developmental &
Comparative Immunology. 2005, 29(2):135-142.

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