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RAHEEM.
NUCLEIC ACIDS :
Introduction:
Frederic Miesher in 1869, isolated an acidic
compound from the nuclear material of
SALMON sperms, and named it as
NUCLIEN which is now called NUCLEIC
ACID.
Jones in 1920 proved the fact there are two
types of nucleic acids, i.e., Deoxy ribo
nucleic acid (DNA) and Ribonucleic acid
(RNA).
In 1935 J. D. Watson and F. H. C Crick, on the
basis of information's available not only
proposed the “Double helical” structure of
DNA but also suggested what Crick
termed “central dogma of molecular
genetics”, which states that genetic
information flows from DNA to RNA to
The Double Helix (1953)
Chemical Composition
NUCLEOTIDE
© 2007 Paul Billiet ODWS
RIBOSE DEOXYRIBOSE
CH2OH CH2OH
O OH O OH
C C C C
H H H H H H H H
C C C C
OH OH OH H
© 2007 Paul Billiet ODWS
BASES
Purines: adenine, guanine (double ring)
Pyrimidine: thymine, cytosine (single
rings)
Purines & Pyrimidines
Adenine Thymine
Guanine Cytosine
Adenine Thymine
Cytosine Guanine
DNA Structure
Sugar= Deoxyribose
Specific Base Pairing
Adenine-Thymine
Guanine-Cytosine
Forms a double Helix Structure
RNA structure
Sugar= Ribose
Thymine gets
replaced by
Uracil
Single stranded
Structural (and functional)
Comparison of DNA & RNA
DNA RNA
Nitrogenous bases
Deoxyribose
Deoxyribose is
O P O
O
Structure of the DNA-
continued
c. Nitrogenous base: There are four
different bases which are divided into
two groups.
i) Pyrimidines: These are single rings
each with six sides. They are Cytosine
and Thymine .
ii) Purines: These are double rings
comprising a six-sided and a five-sided
ring. They are Adenine and Guanine.
Adenine always pairs with
Thymine, with the help of
two hydrogen bonds
and Guanine always pairs with
Cytosine with the help of
three hydrogen bonds.
This makes the two chains complimentary
to each other.
The bases
The most common organic bases are
Adenine (A)
Thymine (T)
Cytosine (C)
Guanine (G)
Nucleotides
PO4
adenine
deoxyribose
Joined nucleotides
A molecule of DNA (polymer) is
PO4 formed by millions of nucleotides
joined together by phospodiester
bonds into a long chain by
condensation reactions.
PO4
PO4
PO4
sugar-phosphate + bases
backbone
In fact, the DNA usually consists of a double
strand of nucleotides
PO4
PO4
PO4 PO4
PO4
PO4
PO4
PO4
PO4
PO4
PO4
PO4
PO4
PO4
Bonding 1
Adenine Thymine
Cytosine Guanine
Bonding 2
PO4
PO4
adenine thymine
PO4
PO4
cytosine guanine
PO4
PO4
PO4
PO4
Pairing up
PO4
PO4
PO4
PO4
PO4 PO4
PO4
PO4
PO4
PO4
PO4
PO4
PO4
PO4
PO4
PO4
The paired strands are coiled into a spiral called
A DOUBLE HELIX
THE DOUBLE
HELIX
bases
sugar-phosphate
chain
Types of DNA :
Two types;
Circular DNA
Non-Circular DNA
CIRCULAR DNA :
In Eukaryotes: The ends of DNA are
cohesive,so they join forming a circular
DNA.eg.mitochondria,chloroplast,tec.
In Prokaryotes: mostly it is in the form of
PLASMID whose replication donot
depends on genomic DNA.eg.bacteria.
NON-CIRCULAR DNA:
The two anti parallel strands of DNA twist
around each other to form helical
structure of double helix.
FUNCTIONS OF DNA
DNA has 2 major functions:
(blueprint)
3) Two new strands of DNA are formed from
DNA polymerase
Growth
Growth
Nitrogenous bases
Replication fork Replication fork
New strand
Original strand
Because of Chargaff’s rule, only the correct,
complementary bases will fit, so chances are good
that the DNA polymerase will make a perfect copy.
Mistakes happen! Mutation!
Hydrogen
bonds
Sugar-phosphate
backbone
Key
Adenine (A)
Thymine (T)
Cytosine (C)
Guanine (G)
Griffith’s Experiment
Was trying to develop a vaccination for
the pneumococcus bacteria.
Vaccine- a prepared substance from
killed or weakened disease causing
agents used to prevent future
infections
He was working with two strains of
bacteria.
Rough - bacteria had a rough
appearance in culture, non-virulent
(doesn't kill)
Smooth - bacteria had a smooth
appearance in culture, virulent (kills)
Heat-killed, disease-
causing bacteria
(smooth colonies)
Heat-killed, disease-
Disease-causing Harmless bacteria causing bacteria
bacteria (smooth (rough colonies (smooth colonies) Control Harmless bacteria
colonies)
(no growth) (rough colonies)
Lives
Dies of pneumonia Lives Dies of pneumonia
Live, disease-causing
bacteria (smooth colonies)
DNA as hereditary material
The Genetic Material is DNA – Alfred
Hershey and Martha Chase, 1952
Previously, scientists thought that proteins
DNA is located
in the head.
Phage infects
Bacteriophage with bacterium No radioactivity inside
sulfur-35 in protein bacterium
coat
Hershey & Chase
Experiment
Concluded that the DNA of viruses is
injected into the bacterial cells, while
the viral proteins remain outside
The injected DNA molecules cause the
bacterial cells to produce more viruses
DNA is the hereditary material – not
proteins.
Wilkins and Rosalind
Franklin
M.H.F. Wilkins and Rosalind Franklin,
early 50’s
Wilkins and Franklin studied the structure of
DNA crystals using X-rays.
They found that the crystals contain
regularly repeating subunits.
The X pattern produced by DNA suggested
that DNA contains structures with
dimensions of 2 nm, 0.34 nm, and 3.4 nm.
The dark structures at the top and bottom
indicate that some structure was
repeated, suggesting a helix.
Rosalind Franklin
X-ray diffraction image of DNA
Watson and Crick
James Watson and Francis H.C. Crick,
1953
Watson and Crick used Chargaff's base data
and Franklin’s X-ray diffraction data to
construct a model of DNA.
The model showed that DNA is a double helix
with sugar-phosphate backbones on the
outside and the paired nucleotide bases on
the inside, in a structure that fit the spacing
estimates from the X-ray diffraction data.
Chargaff's rules showed that A = T and G = C,
so there was complementary base pairing of
a purine with a pyrimidine, giving the correct
width for the helix.
The paired bases can occur in any order, giving
an overwhelming diversity of sequences.
Watson & Crick with their model of DNA
Chargaff’s rules:
Base pairing rule is A-T and G-C
Thymine is replaced by Uracil in RNA
Bases are bonded to each other by
Hydrogen bonds
Discovered because of the relative
percent of each base; (notice that A-T is
similar and C-G are similar)
Erwin Chargaff
Backbone alternates
with phosphate and
sugar (deoxyribose)
with the nucleotides
formingthe rungs or
steps of the ladder
The backbone of it all…
TEMPLATE STRAND
A C G G T A
T G C C A T
DNA
Chromatin
Chromosomes
Nucleosome
Chromosome
DNA
double
helix
Coils
Supercoils
Histones
FUNCTIONS OF DNA :
-Stores genetic information.
-Maintains growth and repair.
genetic information.
RIBONUCLEIC ACID
INTRODUCTION :
Ribonucleic acid usually called as RNA,
is a biologically important type of
molecule that consists of a long chain
of nucleotide units.
a nitrogenous base
Adenine (A)
Uracil (U)
Cytosine (C)
Guanine (G)
Nucleotides
PO4
adenine
ribose
Joined nucleotides
A molecule of RNA is formed
PO4 by millions of nucleotides
joined together into a long
chain .
PO4
PO4
PO4
sugar-phosphate + bases
backbone
REPLACEMENT OF URACIL
The base
thymine is
replaced by
Uracil
(pyrimidine) in
RNA.
Uracil bonds
with adenine.
Types of RNA :
Ø There are three types of RNA in a cell.
Ø Ribosomal RNA (rRNA)
Ø Messenger RNA (mRNA)
Ø Transfer RNA ( tRNA)
Ø
Their main function is to make proteins after taking
instructions from the DNA.
They are temporarily present in the cell.
Ø
Ø
RNA
can be
also called which functions to also called which functions to also called
Bring
Combine
mRNA Carry instructions rRNA tRNA amino acids to
with proteins
ribosome
from to to make up
(rRNA)
Small subunit
The function of the rRNA is to provide a mechanism
for decoding mRNA into amino acids and to
interact with the tRNAs during translation.
DNA
Structure: Structure:
Double stranded Single-stranded
Sugar: Deoxyribose Sugar: Ribose
Bases: Bases:
Adenine Adenine
Guanine Guanine
Cytosine Cytosine
Thymine Uracil
Translation- the Ultimate
Goal!
Going from mRNA to the final product
Why are proteins needed?
Immune system
Muscles move bones
Cell membranes
Enzymes
For repair of broken cells
Growth of organisms
Decoding the Information in
DNA
How does DNA (a twisted latter of atoms)
control everything in a cell and
ultimately an organism?
DNA controls the manufacture of all cellular
proteins including enzymes
A gene is a region of DNA that contains the
instructions for the manufacture of on
particular polypeptide chain (chain of
amino acids)
DNA is a set of blueprints
or code from making proteins
How do you get from
DNA to Proteins?
Protein synthesis –
the manufacture of
proteins
Where are
proteins made in
the cell?
Translation : Protein Synthesis
mRNA combines with a ribosome and
tRNA and makes a protein
Remember:
mRNA carries the codon (three base
sequence that codes for an amino acid)
tRNA carries the anticodon which pairs up
with the codon
tRNA brings the correct amino acid by
reading the genetic code
tRNA ( transfer RNA )
tRNA carries (or transfers) the correct
amino acid to the codon on the
mRNA.
tRNA has an ANTICODON that can
attach to mRNA’s codon.
Translation
m RN
A GUA UCU GUU ACC GUA
•m RNA c a rrie s t h e s a m e m e s s a g e a s
DNA b u t re writ t e n wit h d iffe re n t
n it ro g e n b a s e s .
•Th is m e s s a g e c o d e s fo r a s p e c ific
s e q u e n c e o f a m in o a c id s
•Re vie w..Am in o a c id s a re t h e b u ild in g
b lo c ks o f…
•PROTEINS
Translation
m RN
A GUA UCU GUU ACC GUA
•Co d o n : a s e q u e n c e o f 3 n it ro g e n
b a s e s o n m RNA t h a t c o d e fo r 1 a m in o
a c id
•It ’s a TRIPLET c o d e
•Exa m p le : Th is s t ra n d o f m RNA h a s 5
c o d o n s , s o it wo u ld c o d e fo r 5 a m in o
a c id s .
Translation
m RN
A GUA UCU GUU ACC GUA
•Th e s e c o d o n s a re u n ive rs a l fo r e ve ry
b a c t e ria , p la n t a n d a n im a l o n e a rt h
•Th e re a re 6 4 c o d o n s wh ic h c o d e fo r
a ll 2 0 a m in o a c id s o n e a rt h .
Translation
m RN A
GUA UCU GUU ACC GUA
Ribosome
•Th e m RNA m o le c u le t ra ve ls t o t h e
rib o s o m e s wh e re t h e m RNA c o d e s a re
“re a d ” b y t h e rib o s o m e s
•Rib o s o m e s h o ld t h e m RNA s o a n o t h e r
t yp e o f RNA, t ra n s fe r RNA (t RNA) c a n
a t t a c h t o t h e m RNA
Translation
m RN
A GUA UCU GUU ACC GUA
CA U A G ARibosome
Translation
m RN A
GUA UCU GUU ACC GUA
CA U A G A CA A
Codons
match up
with
anticodons
to create a
protein
Protein formation
Amino acids link
together to
form a protein
The new protein
could become
cell part, an
enzyme, a
hormone etc.
SO:
Say the mRNA strand reads:
mRNA (codon) AUG–GAC–CAG-UGA
tRNA (anticodon) UAC-CUG-GUC-ACU
tRNA would bring the amino acids:
Methionine-Aspartic acid-Glutamine-stop
1)mRNA is transcribed in the
nucleus and leaves the nucleus to
the cytoplasm
reads mRNA
5) The amino acids are joined
Duplication
Inversion
Translocation