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TENTH EDITION

Global Edition
Campbell Reece Urry Cain Wasserman Minorsky Jackson

Topic 1 Biological
Topic 1 Biological Molecules
(Part 2)
Molecules
(part 2)
Biological Macromolecules

Lecture Presentation by
Nicole Tunbridge and
Kathleen Fitzpatrick

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LIPIDS

Water beading on the oily coating of


feathers
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ydrocarbons

a) Hydrocarbons = organic molecules consisting of only carbon


and hydrogen
b) Many organic molecules, such as fats, have hydrocarbon
components
c) Hydrocarbons can undergo reactions that release a large amount
of energy
Nucleus
Fat droplets

10 m
(a) Part of a human adipose cell
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2011 Pearson Eduation, Inc.

(b) A fat molecule

Black = carbon
Gray = hydrogen

oncept 5.3: Lipids are a diverse group of hydrophobic


molecules
a) Lipids are the one class of large biological molecules
that does not include true polymers
b) The unifying feature of lipids is that they mix poorly, if
at all, with water
c) Lipids are hydrophobic because they consist mostly
of hydrocarbons, which form nonpolar covalent bonds
d) The most biologically important lipids are fats,
phospholipids, and steroids

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ats
a) Fats are constructed from two types of smaller
molecules: glycerol and fatty acids
b) Glycerol is a three-carbon alcohol with a hydroxyl
group attached to each carbon
c) A fatty acid consists of a carboxyl group attached to
a long carbon skeleton

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Figure 5.9a

aCOOHgroupattachedtoalongcarbonskeleton

H2O

Fatty acid
(in this case, palmitic acid)

threecarbonalcoholwithaOHgroupattachedtoeachcarbon

Glycerol
(a) One of three __________reactions in the synthesis of a fat

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a)Fats separate from water because water molecules


hydrogen-bond to each other and exclude the fats
b)In a fat, three fatty acids are joined to glycerol
by an ester linkage, creating a triacylglycerol,
or triglyceride
c)The fatty acids in a fat can be all the same or of
two or three different kinds

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Figure 5.9b

Whatlinkageisthis?

Whatisthenameofthisfatmolecule?
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a) Fatty acids vary in length (number of carbons) and in


the number and locations of double bonds
b) Saturated fatty acids have the maximum number of
hydrogen atoms possible and no double bonds
c) Unsaturated fatty acids have one or more double
bonds

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Figure 5.10a

Structural
formula
of a saturated
fat molecule

Space-filling
model of
stearic acid,
a saturated
fatty acid

(a) Isthisfatsaturatedorunsaturated?

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Figure 5.10b

(b) Isthisfatsaturatedorunsaturated?

Structural
formula of an
unsaturated
fat molecule
Space-filling
model of oleic
acid, an
unsaturated
Cis double
fatty acid
bond causes
bending.
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Fatsmadefromsaturatedfattyacidsarecalled
saturatedfatsandaresolidatroomtemperature
Mostanimalfatsaresaturated
Fatsmadefromunsaturatedfattyacidsare
calledunsaturatedfatsoroilsandareliquidat
roomtemperature
Plantfatsandfishfatsareusuallyunsaturated

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1. Why is glycerol, on its own, hydrophilic?


2. If glycerol is hydrophilic, what causes fat to be
hydrophobic?

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a) A diet rich in saturated fats may contribute


to cardiovascular disease through plaque
deposits
b) Hydrogenation is the process of
converting unsaturated fats to saturated
fats by adding hydrogen
c) Hydrogenating vegetable oils also creates
unsaturated fats with trans double bonds
d) These trans fats may contribute more
than saturated fats to cardiovascular
disease

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a) Certain unsaturated fatty acids are not synthesized in


the human body
b) These must be supplied in the diet
c) These essential fatty acids include the omega-3 fatty
acids, which are required for normal growth and are
thought to provide protection against cardiovascular
disease

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a) The major function of fats is energy storage


b) Humans and other mammals store their long-term
food reserves in adipose cells
c) Adipose tissue also cushions vital organs and
insulates the body
Fat
droplets

Adipose tissue

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ritical Thinking Time

a)Hydrogenated vegetable oils are more like


animal fats than other plant oils. Because
they ______________________ than other
plant oils, they can contribute to
cardiovascular disease.

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hospholipids
a) In a phospholipid, two fatty acids and a phosphate
group are attached to glycerol
b) The two fatty acid tails are hydrophobic, but the
phosphate group and its attachments form a
hydrophilic head

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Hydrophobic tails

Hydrophilic head

Figure 5.11

Hydrophilic
head

Phosphate

Hydrophobic
tails

Glycerol
(c) Phospholipid symbol

Fatty acids
Kink due to cis
double bond

(a) Structural formula

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Choline

(b) Space-filling model

(d) Phospholipid bilayer

What is X?

Interstitialfluid

WhyareX&Ypositionedasshown?
X:abletointeractwithwater/polar
environment//orientatetowards
water/polarenvironment
Y:repelswater//orientateawayfrom
water//excludesitselffromwater
WhatisY?

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Cytoplasm

a) When phospholipids are added to water, they


self-assemble into double-layered structures
called bilayers
b) At the surface of a cell, phospholipids are also
arranged in a bilayer, with the hydrophobic tails
pointing toward the interior
c) The structure of phospholipids results in a bilayer
arrangement found in cell membranes
d) The existence of cells depends on phospholipids
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ritical Thinking Time

a)Because water and oil don't mix, water is


ineffective at washing away oily dirt. The
ability of soap to mix with both water and
oily dirt allows dirt to be washed away.
Provide the most logical chemical
explanation for this phenomenon?

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teroids
a) Steroids are lipids characterized by a carbon
skeleton consisting of four fused rings
b) Cholesterol, a type of steroid, is a component in
animal cell membranes
c) A high level of cholesterol in the blood may contribute
to cardiovascular disease

Cholesterol, a steroid
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Differences in the chemical groups of sex


hormones

Testosterone

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Estradiol

Anabolic steroids pose health risks

synthetic variants of
testosterone

cause a buildup of
muscle and bone
mass

a) prescribed to treat general anemia and some


diseases that destroy body muscle
b) abused by some athletes with serious
consequences, including violent mood swings,
depression ,liver damage or cancer, high cholesterol,
and high blood pressure.
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Concept 5.4:
Proteins include a diversity of structures, resulting in a
wide range of functions
a) Proteins account for more than 50% of the dry mass
of most cells
b) Protein functions
1. Enzymes

6. Contractile / Movement

2. Storage

7. Receptor

3. Defensive
4. Transport
5. Signal
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8. Structural support
9. Cellular communications

igure 5.13a

Enzymatic proteins

Defensive proteins

Function: Selective acceleration of


chemical reactions
Example: Digestive enzymes catalyze the
hydrolysis of bonds in food molecules.

Function: Protection against disease


Example: Antibodies inactivate and help
destroy viruses and bacteria.
Antibodies

Enzyme

Virus

Bacterium

Storage proteins

Transport proteins

Function: Storage of amino acids


Examples: Casein, the protein of milk, is the
major source of amino acids for baby
mammals. Plants have storage proteins in
their seeds. Ovalbumin is the protein of egg
white, used as an amino acid source for the
developing embryo.

Function: Transport of substances


Examples: Hemoglobin, the iron-containing
protein of vertebrate blood, transports
oxygen from the lungs to other parts of the
body. Other proteins transport molecules
across membranes, as shown here.

Ovalbumin

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Amino acids
for embryo

Transport
protein
Cell membrane

igure 5.13b

Hormonal proteins

Receptor proteins

Function: Coordination of an organisms


activities
Example: Insulin, a hormone secreted by the
pancreas, causes other tissues to take up
glucose, thus regulating blood sugar,
concentration.

Function: Response of cell to chemical


stimuli
Example: Receptors built into the
membrane of a nerve cell detect
signaling molecules released by other
nerve cells.

High
blood sugar

Insulin
secreted

Normal
blood sugar

Signaling
molecules

Receptor
protein

Contractile and motor proteins

Structural proteins

Function: Movement
Examples: Motor proteins are responsible
for the undulations of cilia and flagella.
Actin and myosin proteins are responsible
for the contraction of muscles.

Function: Support
Examples: Keratin is the protein of hair,
horns, feathers, and other skin
appendages. Insects and spiders use silk
fibers to make their cocoons and webs,
respectively. Collagen and elastin proteins
provide a fibrous framework in animal
connective tissues.

Actin

Myosin

Collagen
Muscle
tissue

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30 m

Connective
60 m
tissue

a) Enzymes are proteins that act as catalysts to speed


up chemical reactions
b) Enzymes can perform their functions repeatedly,
functioning as workhorses that carry out the
processes of life

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ritical Thinking Time

Defensive proteins are manufactured by the


__________ system.

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mino Acid Monomers


a) Amino acids are organic molecules with amino and
carboxyl groups
b) Amino acids differ in their properties due to differing
side chains, called R groups

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igure 5.UN01

Side chain (R group)


carbon

What is this molecule called?


What groups are X & Y?
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igure 5.14a

Nonpolar side chains; hydrophobic


Side chain (R group)

Glycine
(Gly or G)

Methionine
(Met or M)

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Alanine
(Ala or A)

Valine
(Val or V)

Phenylalanine
(Phe or F)

Leucine
(Leu or L)

Tryptophan
(Trp or W)

Isoleucine
(Ile or I)

Proline
(Pro or P)

igure 5.14b

Polar side chains; hydrophilic

Serine
(Ser or S)

Threonine
(Thr or T)

Cysteine
(Cys or C)

Tyrosine Asparagine Glutamine


(Tyr or Y) (Asn or N) (Gln or Q)

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igure 5.14c

Electrically charged side chains; hydrophilic


Basic (positively charged)
Acidic (negatively charged)

Aspartic acid Glutamic acid


(Asp or D)
(Glu or E)

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Lysine
Arginine
(Lys or K) (Arg or R)

Histidine
(His or H)

olypeptides (Amino Acid Polymers)


a) Amino acids are linked by covalent bonds called
peptide bonds
b) A polypeptide is a polymer of amino acids
c) Polypeptides range in length from a few to more than
a thousand monomers
d) Each polypeptide has a unique linear sequence of
amino acids, with a carboxyl end (C-terminus) and an
amino end (N-terminus)

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a) Proteins are all constructed from the same set of 20


amino acids
b) Polypeptides are unbranched polymers built from
these amino acids
c) A protein is a biologically functional molecule that
consists of one or more polypeptides

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(b)

(a)

What type of
reaction is this?
What is the name of
bond W?

Peptide bond
(c)

New peptide
bond forming

Side
chains

Backbone
Amino end
(N-terminus)

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Carboxyl end
(C-terminus)

Which is an example
of a dipeptide &
tripeptide?

Is this functional group soluble in water or lipids?


Carbox
yl

STRUCTURE

Carboxylic acids, or
organic acids

EXAMPLE

NAME OF
COMPOUND

FUNCTIONAL
Has acidic properties
PROPERTIES
because the covalent
bond between oxygen and
hydrogen is so polar; for
example,
Acetic acid, which gives
vinegar its sour taste

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Acetic
Acetate
acid
ion
Found in cells in the
ionized form with a
charge of 1 and called a
carboxylate ion (here,
specifically, the acetate
ion).

Is this functional group soluble in water or lipids?


Amino
STRUCTURE

Amines

EXAMPLE

Glycine
Because it also has
a carboxyl group,
glycine is both an
amine and
a carboxylic acid;
compounds with
both groups are
called amino acids.
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Acts as a base;
can pick up an H+
from the
surrounding
solution (water,
in living
organisms).

(nonionize (ionized)
d)
Ionized, with a
charge of 1+,
under cellular
conditions.

NAME OF
COMPOUND

FUNCTIONA
L
PROPERTIES

Is this functional group soluble in water or lipids?


Sulfhydryl
STRUCTURE

Thiols

NAME OF
COMPOUND

(may be
written HS
)

EXAMPLE

Cysteine
Cysteine is an
important sulfurcontaining amino
acid.

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FUNCTIONAL
Two sulfhydryl
PROPERTIES
groups can react,
forming a covalent
bond. This crosslinking helps
stabilize protein
structure.
Cross-linking of
cysteines in hair
proteins maintains the
curliness or
straightness of hair.
Straight hair can be
permanently curled
by shaping it around
curlers, then breaking
and re-forming the
cross-linking bonds.

rotein Structure and Function


a) The specific activities of proteins result from their
intricate three-dimensional architecture
b) A functional protein consists of one or more
polypeptides precisely twisted, folded, and coiled into
a unique shape

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igure 5.16

Target
molecule
Groove

(a) A ribbon model

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Groove

(b) A space-filling model

(c) A wireframe model

a) The sequence of amino acids determines a proteins


three-dimensional structure
b) A proteins structure determines how it works
c) The function of a protein usually depends on
its ability to recognize and bind to some other
molecule

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igure 5.17

Antibody protein

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Protein from flu virus

Q
1. What shape are most proteins?

2. What is the name given to a protein polymer?

3. What is a protein monomer called?

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our Levels of Protein Structure


a) The primary structure of a protein is its unique
sequence of amino acids
b) Secondary structure, found in most proteins, consists
of coils and folds in the polypeptide chain
c) Tertiary structure is determined by interactions among
various side chains (R groups)
d) Quaternary structure results when a protein consists
of multiple polypeptide chains

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a) The primary structure of a protein is its sequence of


amino acids
b) Primary structure is like the order of letters in a long
word
c) Primary structure is determined by inherited genetic
information
Primary Structure
Amino
acids
1

10

20

15

Amino end
30
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25

igure 5.18a

Primary structure
of transthyretin

Primary Structure
Amino
acids
1

Function:
Transport vitamin A
& one of the thyroid
hormones in blood

10

20

15

Amino end
30

25

35

45

40

50

Primary structure of transthyretin


70

65

60

55

75
80

85

90
95

115

120
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110

125

105

100

Carboxyl end

roteins

What bonds are involved in primary structure?

Which parts of two amino acids are involved per bond?

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a) The coils and folds of secondary structure result


from hydrogen bonds between repeating constituents
of the polypeptide backbone
b) Typical secondary structures are a coil called an
helix and a folded structure called a pleated sheet
Secondary
Structure
helix
Hydrogen bond
strand
Hydrogen
bond

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pleated sheet

Abdominal glands of the


spider secrete silk fibers
made of a structural protein
containing pleated sheets.
The radiating strands, made
of dry silk fibers, maintain
the shape of the web.
The spiral strands (capture
strands) are elastic, stretching
in response to wind, rain,
and the touch of insects.

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Q
What shapes can you see in secondary structure?

What bonds are responsible for producing such


shapes?

Which atoms are involved in such bonds?

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a) Tertiary structure, the overall shape of a


polypeptide, results from interactions between
R groups, rather than interactions between backbone
constituents
b) These interactions include hydrogen bonds,
ionic bonds, hydrophobic interactions, and
van der Waals interactions
c) Strong covalent bonds called disulfide bridges may
reinforce the proteins structure
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igure 5.18d

Hydrogen
bond

Hydrophobic
interactions and
Van der Waals
interactions

Disulfide
bridge
Ionic bond

Polypeptide
backbone
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a) Quaternary structure results when two or more


polypeptide chains form one macromolecule
b) Collagen is a fibrous protein consisting of three
polypeptides coiled like a rope
Collagen

c) Hemoglobin is a globular protein consisting of


four polypeptides: two alpha and two beta chains
Hemoglobin

Heme
Iron

subunit

subunit
subunit
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subunit

Whats the difference between the 2 structures below?


one comprises a polypeptide; the other, more than one

Tertiary Structure Quaternary Structure

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Which levels of protein structure are represented


below?
Polypeptide
chain

Chains
Quaternary

Iron
Heme
Chains

Collagen

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Hemoglobin

Q
a) How many poly peptides are involved?

a) What type of bonds give rise to Quaternary


Structure?

a) Are these intra- or inter-polypeptide bonds?

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ickle-Cell Disease: A Change in Primary Structure


a) A slight change in primary structure can affect a
proteins structure and ability to function
b) Sickle-cell disease, an inherited blood disorder,
results from a single amino acid substitution in the
protein hemoglobin

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igure 5.19

Normal

Primary
Structure
1
2
3
4
5
6
7

Secondary
and Tertiary
Structures
Normal
subunit

Quaternary
Structure

Function

Normal
hemoglobin

Proteins do not associate


with one another; each
carries oxygen.

5 m

Sickle-cell

1
2
3
4
5
6
7

Sickle-cell
subunit

Sickle-cell
hemoglobin

Proteins aggregate into a


fiber; capacity to
carry oxygen
is reduced.

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Red Blood Cell


Shape

5 m

10 m

Normal red blood


cells are full of
individual
hemoglobin
molecules, each
carrying oxygen.
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10 m

Fibers of abnormal
hemoglobin deform
red blood cell into
sickle shape.

hat Determines Protein Structure?


a) In addition to primary structure, physical and chemical
conditions can affect structure
b) Alterations in pH, salt concentration,
temperature, or other environmental factors
can cause a protein to unravel
c) This loss of a proteins native structure is
called denaturation
d) A denatured protein is biologically inactive

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igure 5.20-1

Normal protein

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igure 5.20-2

Normal protein

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Denatured protein

igure 5.20-3

Normal protein

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Denatured protein

Although polypeptide and protein are


often used interchangeably
Terms

Match terms (left) with


definitions (below)

(Protein
1. two or more amino
acids joined
Polypeptid
e
2. linear polymer
composed of multiple
Peptide)
amino acids
3. not-yet functional
product
4. large polypeptides.
5. a functional product
after undergoing
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subsequent chemical

Although polypeptide and protein are


often used interchangeably
Terms

Match terms (left) with


definitions (below)

Peptide
bond

1. Joining of two or more


amino acids

Polypeptid 2. linear polymer composed


e
of multiple amino acids

3. not-yet functional
product
Protein

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4. large polypeptides
5. a functional product
after undergoing
subsequent chemical
modification (discussed

oncept 5.5: Nucleic acids store, transmit, and help


express hereditary information
a) The amino acid sequence of a polypeptide is
programmed by a unit of inheritance called
a gene
b) Genes consist of DNA, a nucleic acid made of
monomers called nucleotides

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he Roles of Nucleic Acids


a) There are two types of nucleic acids
a)Deoxyribonucleic acid (DNA)
b)Ribonucleic acid (RNA)

b) DNA provides directions for its own replication


c) DNA directs synthesis of messenger RNA (mRNA)
and, through mRNA, controls protein synthesis
d) This process is called gene expression

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igure 5.23-1

DNA

1 Synthesis of
mRNA

mRNA

NUCLEUS
CYTOPLASM

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igure 5.23-2

DNA

1 Synthesis of
mRNA

mRNA

NUCLEUS
CYTOPLASM
mRNA
2 Movement of
mRNA into
cytoplasm

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igure 5.23-3

DNA

1 Synthesis of
mRNA

mRNA

NUCLEUS
CYTOPLASM
mRNA
2 Movement of
mRNA into
cytoplasm

Ribosome

3 Synthesis
of protein

Polypeptide
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Amino
acids

a) Each gene along a DNA molecule directs synthesis of


a messenger RNA (mRNA)
b) The mRNA molecule interacts with the cells proteinsynthesizing machinery to direct production of a
polypeptide
c) The flow of genetic information can be summarized
as DNA RNA protein

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he Components of Nucleic Acids


a) Nucleic acids are polymers called polynucleotides
b) Each polynucleotide is made of monomers called
nucleotides
c) Each nucleotide consists of a nitrogenous base, a
pentose sugar, and one or more phosphate groups
d) The portion of a nucleotide without the phosphate
group is called a nucleoside

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a) Nucleoside nitrogenous base sugar


b) There are two families of nitrogenous bases
a) Pyrimidines (cytosine, thymine, and uracil)
have a single six-membered ring
b)Purines (adenine and guanine) have a six-membered
ring fused to a five-membered ring

c) In DNA, the sugar is deoxyribose; in RNA, the sugar is


ribose
d) Nucleotide nucleoside phosphate group
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igure 5.24

NITROGENOUS BASES
Pyrimidines

5 end

Sugar-phosphate backbone
(on blue background)

Cytosine
(C)

5C
3C

Thymine
(T, in DNA)
Purines

Uracil
(U, in RNA)

Nucleoside
Nitrogenous
base
Adenine (A)

5C

1C
5C
3C

Phosphate
group

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SUGARS

3C

Sugar
(pentose)

(b) Nucleotide

3 end
(a) Polynucleotide, or nucleic acid

Guanine (G)

Deoxyribose
(in DNA)

Ribose (in DNA)

(c) Nucleoside components

Sugar-phosphate backbone
(on blue background)
Why is the sugar called pentose?
5 end

igure 5.24a

5 carbon sugar

5C

Whats the diff between nucleoside & nucleotide?


Nucleoside is the portion of nucleotide without
the phosphate group

3C

Nucleoside
Nitrogenous
base
5C

1C

Phosphate
group

5C
3C

Sugar
(pentose)

(b) Nucleotide

3 end
(a) Polynucleotide, or nucleic acid

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3C

At which sugar C no. is:


i. phosphate attached? 5 carbon
ii. A base attached? 1 carbon

igure 5.24b

NITROGENOUS BASES
Pyrimidines

Cytosine
(C)

Thymine
(T, in DNA)
Purines

Adenine (A)

Guanine (G)

(c) Nucleoside components


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Uracil
(U, in RNA)

1. What are the elements


present in ALL these bases?
carbon, hydrogen, oxygen,
nitrogen
2. What bases are found in
a. RNA?
A, C, U, G
b. DNA?
A, C, T, G

igure 5.24c

Structural Similarity & Difference between


Sugars in DNA & RNA
SUGARS

Deoxyribose
(in DNA)

Ribose (in RNA)

(c) Nucleoside components

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ucleotide Polymers
a) Nucleotides are linked together to build a
polynucleotide
b) Adjacent nucleotides are joined by a phosphodiester
linkage, which consists of a phosphate group that
links the sugars of two nucleotides (OH group on 3
carbon of one nucleotide and phosphate on 5 carbon
on the next)
c) These links create a backbone of sugar-phosphate
units with nitrogenous bases as appendages
d) The sequence of bases along a DNA or mRNA
polymer is unique for each gene
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he Structures of DNA and RNA Molecules


a) DNA molecules have two
polynucleotides spiraling
around an imaginary axis,
forming a double helix
b) The backbones run in
opposite 5 3 directions
from each other, an
arrangement referred to as
antiparallel
c) One DNA molecule includes
many genes
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a) Only certain bases in DNA pair up and form hydrogen


bonds: adenine (A) always with thymine (T), and
guanine (G) always with cytosine (C)
adenine (A) = thymine (T)
guanine (G) = cytosine (C)

b) This is called complementary base pairing


c) This feature of DNA structure makes it possible
to generate two identical copies of each DNA
molecule in a cell preparing to divide
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a) RNA, in contrast to DNA, is single


stranded.
b) Complementary pairing can also
occur within an RNA molecule allows
it to take on particular 3D shape.
c) tRNA shape result from base pairing
between nucleotides where
complementary stretches of molecule
run antiparallel to each other.
d) While DNA always exists as a double
helix, RNA molecules are more
variable in form.
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igure 5.UN03

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igure 5.UN05

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