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Topic 1 Biological
Topic 1 Biological Molecules
(Part 2)
Molecules
(part 2)
Biological Macromolecules
Lecture Presentation by
Nicole Tunbridge and
Kathleen Fitzpatrick
LIPIDS
ydrocarbons
10 m
(a) Part of a human adipose cell
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Black = carbon
Gray = hydrogen
ats
a) Fats are constructed from two types of smaller
molecules: glycerol and fatty acids
b) Glycerol is a three-carbon alcohol with a hydroxyl
group attached to each carbon
c) A fatty acid consists of a carboxyl group attached to
a long carbon skeleton
Figure 5.9a
aCOOHgroupattachedtoalongcarbonskeleton
H2O
Fatty acid
(in this case, palmitic acid)
threecarbonalcoholwithaOHgroupattachedtoeachcarbon
Glycerol
(a) One of three __________reactions in the synthesis of a fat
Figure 5.9b
Whatlinkageisthis?
Whatisthenameofthisfatmolecule?
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Figure 5.10a
Structural
formula
of a saturated
fat molecule
Space-filling
model of
stearic acid,
a saturated
fatty acid
(a) Isthisfatsaturatedorunsaturated?
Figure 5.10b
(b) Isthisfatsaturatedorunsaturated?
Structural
formula of an
unsaturated
fat molecule
Space-filling
model of oleic
acid, an
unsaturated
Cis double
fatty acid
bond causes
bending.
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Fatsmadefromsaturatedfattyacidsarecalled
saturatedfatsandaresolidatroomtemperature
Mostanimalfatsaresaturated
Fatsmadefromunsaturatedfattyacidsare
calledunsaturatedfatsoroilsandareliquidat
roomtemperature
Plantfatsandfishfatsareusuallyunsaturated
Adipose tissue
hospholipids
a) In a phospholipid, two fatty acids and a phosphate
group are attached to glycerol
b) The two fatty acid tails are hydrophobic, but the
phosphate group and its attachments form a
hydrophilic head
Hydrophobic tails
Hydrophilic head
Figure 5.11
Hydrophilic
head
Phosphate
Hydrophobic
tails
Glycerol
(c) Phospholipid symbol
Fatty acids
Kink due to cis
double bond
Choline
What is X?
Interstitialfluid
WhyareX&Ypositionedasshown?
X:abletointeractwithwater/polar
environment//orientatetowards
water/polarenvironment
Y:repelswater//orientateawayfrom
water//excludesitselffromwater
WhatisY?
Cytoplasm
teroids
a) Steroids are lipids characterized by a carbon
skeleton consisting of four fused rings
b) Cholesterol, a type of steroid, is a component in
animal cell membranes
c) A high level of cholesterol in the blood may contribute
to cardiovascular disease
Cholesterol, a steroid
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Testosterone
Estradiol
synthetic variants of
testosterone
cause a buildup of
muscle and bone
mass
Concept 5.4:
Proteins include a diversity of structures, resulting in a
wide range of functions
a) Proteins account for more than 50% of the dry mass
of most cells
b) Protein functions
1. Enzymes
6. Contractile / Movement
2. Storage
7. Receptor
3. Defensive
4. Transport
5. Signal
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8. Structural support
9. Cellular communications
igure 5.13a
Enzymatic proteins
Defensive proteins
Enzyme
Virus
Bacterium
Storage proteins
Transport proteins
Ovalbumin
Amino acids
for embryo
Transport
protein
Cell membrane
igure 5.13b
Hormonal proteins
Receptor proteins
High
blood sugar
Insulin
secreted
Normal
blood sugar
Signaling
molecules
Receptor
protein
Structural proteins
Function: Movement
Examples: Motor proteins are responsible
for the undulations of cilia and flagella.
Actin and myosin proteins are responsible
for the contraction of muscles.
Function: Support
Examples: Keratin is the protein of hair,
horns, feathers, and other skin
appendages. Insects and spiders use silk
fibers to make their cocoons and webs,
respectively. Collagen and elastin proteins
provide a fibrous framework in animal
connective tissues.
Actin
Myosin
Collagen
Muscle
tissue
30 m
Connective
60 m
tissue
igure 5.UN01
igure 5.14a
Glycine
(Gly or G)
Methionine
(Met or M)
Alanine
(Ala or A)
Valine
(Val or V)
Phenylalanine
(Phe or F)
Leucine
(Leu or L)
Tryptophan
(Trp or W)
Isoleucine
(Ile or I)
Proline
(Pro or P)
igure 5.14b
Serine
(Ser or S)
Threonine
(Thr or T)
Cysteine
(Cys or C)
igure 5.14c
Lysine
Arginine
(Lys or K) (Arg or R)
Histidine
(His or H)
(b)
(a)
What type of
reaction is this?
What is the name of
bond W?
Peptide bond
(c)
New peptide
bond forming
Side
chains
Backbone
Amino end
(N-terminus)
Carboxyl end
(C-terminus)
Which is an example
of a dipeptide &
tripeptide?
STRUCTURE
Carboxylic acids, or
organic acids
EXAMPLE
NAME OF
COMPOUND
FUNCTIONAL
Has acidic properties
PROPERTIES
because the covalent
bond between oxygen and
hydrogen is so polar; for
example,
Acetic acid, which gives
vinegar its sour taste
Acetic
Acetate
acid
ion
Found in cells in the
ionized form with a
charge of 1 and called a
carboxylate ion (here,
specifically, the acetate
ion).
Amines
EXAMPLE
Glycine
Because it also has
a carboxyl group,
glycine is both an
amine and
a carboxylic acid;
compounds with
both groups are
called amino acids.
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Acts as a base;
can pick up an H+
from the
surrounding
solution (water,
in living
organisms).
(nonionize (ionized)
d)
Ionized, with a
charge of 1+,
under cellular
conditions.
NAME OF
COMPOUND
FUNCTIONA
L
PROPERTIES
Thiols
NAME OF
COMPOUND
(may be
written HS
)
EXAMPLE
Cysteine
Cysteine is an
important sulfurcontaining amino
acid.
FUNCTIONAL
Two sulfhydryl
PROPERTIES
groups can react,
forming a covalent
bond. This crosslinking helps
stabilize protein
structure.
Cross-linking of
cysteines in hair
proteins maintains the
curliness or
straightness of hair.
Straight hair can be
permanently curled
by shaping it around
curlers, then breaking
and re-forming the
cross-linking bonds.
igure 5.16
Target
molecule
Groove
Groove
igure 5.17
Antibody protein
Q
1. What shape are most proteins?
10
20
15
Amino end
30
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25
igure 5.18a
Primary structure
of transthyretin
Primary Structure
Amino
acids
1
Function:
Transport vitamin A
& one of the thyroid
hormones in blood
10
20
15
Amino end
30
25
35
45
40
50
65
60
55
75
80
85
90
95
115
120
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110
125
105
100
Carboxyl end
roteins
pleated sheet
Q
What shapes can you see in secondary structure?
igure 5.18d
Hydrogen
bond
Hydrophobic
interactions and
Van der Waals
interactions
Disulfide
bridge
Ionic bond
Polypeptide
backbone
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Heme
Iron
subunit
subunit
subunit
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subunit
Chains
Quaternary
Iron
Heme
Chains
Collagen
Hemoglobin
Q
a) How many poly peptides are involved?
igure 5.19
Normal
Primary
Structure
1
2
3
4
5
6
7
Secondary
and Tertiary
Structures
Normal
subunit
Quaternary
Structure
Function
Normal
hemoglobin
5 m
Sickle-cell
1
2
3
4
5
6
7
Sickle-cell
subunit
Sickle-cell
hemoglobin
5 m
10 m
10 m
Fibers of abnormal
hemoglobin deform
red blood cell into
sickle shape.
igure 5.20-1
Normal protein
igure 5.20-2
Normal protein
Denatured protein
igure 5.20-3
Normal protein
Denatured protein
(Protein
1. two or more amino
acids joined
Polypeptid
e
2. linear polymer
composed of multiple
Peptide)
amino acids
3. not-yet functional
product
4. large polypeptides.
5. a functional product
after undergoing
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subsequent chemical
Peptide
bond
3. not-yet functional
product
Protein
4. large polypeptides
5. a functional product
after undergoing
subsequent chemical
modification (discussed
igure 5.23-1
DNA
1 Synthesis of
mRNA
mRNA
NUCLEUS
CYTOPLASM
igure 5.23-2
DNA
1 Synthesis of
mRNA
mRNA
NUCLEUS
CYTOPLASM
mRNA
2 Movement of
mRNA into
cytoplasm
igure 5.23-3
DNA
1 Synthesis of
mRNA
mRNA
NUCLEUS
CYTOPLASM
mRNA
2 Movement of
mRNA into
cytoplasm
Ribosome
3 Synthesis
of protein
Polypeptide
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Amino
acids
igure 5.24
NITROGENOUS BASES
Pyrimidines
5 end
Sugar-phosphate backbone
(on blue background)
Cytosine
(C)
5C
3C
Thymine
(T, in DNA)
Purines
Uracil
(U, in RNA)
Nucleoside
Nitrogenous
base
Adenine (A)
5C
1C
5C
3C
Phosphate
group
SUGARS
3C
Sugar
(pentose)
(b) Nucleotide
3 end
(a) Polynucleotide, or nucleic acid
Guanine (G)
Deoxyribose
(in DNA)
Sugar-phosphate backbone
(on blue background)
Why is the sugar called pentose?
5 end
igure 5.24a
5 carbon sugar
5C
3C
Nucleoside
Nitrogenous
base
5C
1C
Phosphate
group
5C
3C
Sugar
(pentose)
(b) Nucleotide
3 end
(a) Polynucleotide, or nucleic acid
3C
igure 5.24b
NITROGENOUS BASES
Pyrimidines
Cytosine
(C)
Thymine
(T, in DNA)
Purines
Adenine (A)
Guanine (G)
Uracil
(U, in RNA)
igure 5.24c
Deoxyribose
(in DNA)
ucleotide Polymers
a) Nucleotides are linked together to build a
polynucleotide
b) Adjacent nucleotides are joined by a phosphodiester
linkage, which consists of a phosphate group that
links the sugars of two nucleotides (OH group on 3
carbon of one nucleotide and phosphate on 5 carbon
on the next)
c) These links create a backbone of sugar-phosphate
units with nitrogenous bases as appendages
d) The sequence of bases along a DNA or mRNA
polymer is unique for each gene
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igure 5.UN03
igure 5.UN05