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Evolution of the
H1N1 pandemic
European Centre for Disease Prevention and Control
Based on various talks given by ECDC staff
Version 31 July 2009
About this presentation
Comments on the slides and the notes are very much welcomed
to be sent to influenza@ecdc.europa.eu. Please state 'Pandemic
PowerPoints' in the subject line.
ECDC thanks the National Institute of Infectious Diseases, Japan, for the original
work on Slide 3, and the Centers for Disease Control and Prevention, USA, for the
original idea in Slides 4 and 36.
2
Pandemics of influenza
Recorded human pandemic influenza
(early sub-types inferred)
H2N2 H2N2
H1N1 H1N1
Pandemic
H3N8 H3N2 H1N1
1895 1905 1915 1925 1955 1965 1975 1985 1995 2005 2010 2015
Reproduced and adapted (2009) with permission of Dr Masato Tashiro, Director, Center for Influenza Virus
Research, Animated slide: Press space bar
3
National Institute of Infectious Diseases (NIID), Japan.
Genetic origins of the pandemic
(H1N1) 2009 virus: viral reassortment
N. American H1N1
(swine/avian/huma
n)
Eurasian
swine H1N1 PB2
PB
PB2
PB PA
1
PA H
1 N
H A
N
P
N
A
N MP
A
P N
MP
A
N S
S
PB2
PB
PA
1
H
N
A Pandemic
N
P
MP
(H1N1)
A
N 2009, combining
S
Classical swine, N. American
lineage swine, avian and
Avian, N. American lineage
Human seasonal H3N2
human viral
Eurasian swine lineage components
4
The situation could be a lot worse
for Europe! (Situation circa summer
2009)
A pandemic strain emerging in the
A pandemic
emerging in SE
Asia
Americas.
Delayed virus
Immediate virus sharing so rapid sharing
diagnostic and vaccines. Based on a more
Pandemic (H1N1) currently not thatpathogenic strain,
e.g. A(H5N1)
pathogenic.
No residual
Some seeming residual immunity in a immunity
Heightened
major large risk group (older people).
pathogenicit Inbuilt
y antiviral
No known pathogenicity markers. resistance
Initially susceptible to oseltamivir. Minimal data until
transmission
Good data and information coming out of reached Europe
5
But no room for complacency
(Situation and information: late May
2009)
Pandemics take some time to get going (1918 and 1968).
Some pandemic viruses have ‘turned nasty’ (1918 and
1968).
When the pandemic wave affects Europe the health services
will be challenged
There will be severely ill people and deaths — in risk groups
(young children, pregnant women and especially people
with underlying illnesses).
As the virus spreads south, will it exchange genes with
seasonal viruses that are resistant: A(H1N1)-H247Y, more
pathogenic A(H3N2), or even highly pathogenic A(H5N1)?
An inappropriate and excessive response to the pandemic
could be worse than the pandemic itself.
6
Candidate objectives of pandemic
responses
Protect citizens and visitors against the health and wider consequences of the
pandemic as far as this is possible.
Through surveillance and rapid studies undertake early assessment to
determine the special features of this pandemic that will inform the needed
countermeasures.
Identify and protect those most vulnerable to the pandemic.
Deploy the known effective countermeasures and adapt and employ other
countermeasures so that they have a net positive effect.
Apply countermeasures as effectively and equitably as possible.
Organise and adapt health and social care systems to provide treatment and
support for those likely to suffer from influenza and its complications whilst
sustaining other essential care services.
Support the continuity of other essential services and protect critical
infrastructure.
Support the continuation of everyday activities as far as practical.
Instill and maintain trust and confidence by ensuring that the professionals,
the public and the media are engaged and well informed.
Promote a return to normality and the restoration of any disrupted services at
the earliest opportunity.
7
Idealised national curve for planning,
Europe 2009: Reality is never so
smooth and simple
Initiation Acceleration Peak Declining
25%
Proportion of total cases, consultations, hospitalisations oraths
de
20%
15%
10%
5%
0%
1 2 3 4 5 6 7 8 9 10 11 12
Week
20%
15%
10%
5%
0%
Apr May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr
Month
In reality, the initiation phase can be prolonged, especially in the summer months.
What cannot be determined is when acceleration takes place.
10
For any future pandemic virus –
what can and cannot be assumed?
What probably can be assumed: What cannot be assumed:
Known knowns Known unknowns
Antigenic type and phenotype
Modes of transmission (droplet,
Susceptibility/resistance to antivirals
direct and indirect contact) Age-groups and clinical groups most
Broad incubation period and serial affected
interval Age-groups with most transmission
At what stage a person is infectious Clinical attack rates
Pathogenicity (case-fatality rates)
Broad clinical presentation and
‘Severity’ of the pandemic
case definition (what influenza
Precise parameters needed for modelling
looks like) and forecasting (serial interval, Ro)
The general effectiveness of Precise clinical case definition
personal hygiene measures The duration, shape, number and tempo
(frequent hand washing, using of the waves of infection
tissues properly, staying at home Will new virus dominate over seasonal
when you get ill) type A influenza?
That in temperate zones Complicating conditions (super-
infections)
transmission will be lower in the The effectiveness of interventions and
spring and summer than in the counter-measures including
autumn and winter pharmaceuticals
The safety of pharmaceutical
interventions
11
Some of the 'known unknowns' in
the 20th century pandemics
Three pandemics (1918, 1957, 1968).
Each quite different in shape and waves.
Some differences in effective reproductive
number.
Different groups affected.
Different levels of severity including case
fatality ratio.
Imply different approaches to mitigation.
12
Age-specific clinical attack rate in
previous pandemics
60% 1957 Kansas City
1957 S Wales
1957 SE London
1968 Kansas City
50%
1918 New York State
% with clinical disease
1918 Manchester
1918 Leicester
40% 1918 Warrington & Wigan
30%
20%
10%
0%
0 20 40 60 80
Age (midpoint of age class)
3500
3000
Excess deaths
2500
2000
1500
1000
14000
Excess deaths
12000
10000
8000
6000
16,000
Deaths in England and Wales
14,000
12,000
10,000
8,000
6,000
4,000
2,000
0
43
45
47
49
51
41
39
27
29
31
33
35
37
18
10
16
12
14
2
4
6
8
1918 Week no. and year 1919
1918/19: ‘Influenza deaths’, England and Wales. Transmissibility: estimated Basic Reproductive Number (Ro
Ro = 2-3 (US) Mills, Robins, Lipsitch (Nature 2004)
The pandemic affected young adults, the very Ro = 1.5-2 (UK) Gani et al (EID 2005)
young and older age groups. Ro = 1.5-1.8 (UK) Hall et al (Epidemiol. Infect. 2006)
Ro = 1.5-3.7 (Geneva) Chowell et al (Vaccine 2006)
Murray CJL, Lopez AD, Chin B, Feehan D, Hill KH. Estimation of potential global pandemic influenza
mortality on the basis of vital registry data from the 1918–20 pandemic: a quantitative analysis. Lancet.
2006;368: 2211-2218.
16
1957/1958 pandemic: A(H2N2) —
especially transmitted among children
1,000
Recorded deaths in England and Wales from
800
600
influenza
400
200
0
10
17
31
14
21
28
12
26
23
30
14
28
24
19
16
21
13
20
11
25
15
22
27
18
3
2
9
4
6
1
8
July August September October November December January February
Week number and month during the winter of 1957/58
1957/58: ‘Influenza deaths’, England and Wales Transmissibility: estimated Basic Reproductive Number (Ro
Ro = 1.8 (UK) Vynnycky, Edmunds (Epidemiol. Infect.2007
Ro = 1.65 (UK) Gani et al (EID 2005)
Ro = 1.5 (UK) Hall et al (Epidemiol. Infect. 2006)
Ro = 1.68 Longini et al (Am J Epidem 2004)
1,000
800
Initial
600 appearance
400
200
0
28
36
44
16
24
40
48
12
20
50
32
12
42
48
20
28
36
4
4
1967 1968 1969 1970
Week no. and year
1968/69: GP consultations, England and Wales Transmissibility: estimated Basic Reproductive Number (Ro
Ro = 1.5-2.2 (World) Cooper et al (PLoS Med.2006)
Ro = 2.2 (UK) Gani et al (EID 2005)
Ro = 1.3-1.6 (UK) Hall et al (Epidemiol. Infect. 2006)
20%
15%
10%
5%
0%
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
Week
35%
30%
25%
20%
15%
10%
5%
0%
Seasonal 1918 New 1918 1918 1957 SE 1968
influenza York State Leicester Warrington London Kansas City
and Wigan
21
Seasonal influenza compared to
pandemic — proportions of types of
cases
Deaths
Requiring
hospitalisation
Clinical
Deaths Requiring symptoms
hospitalisation
Clinical
symptoms
Asymptomatic
Asymptomatic
22
Initial experience in
North America 2009
23
Emerging themes in North America,
late
Early July 2009 (1)
epidemic:
– increased influenza-like illness reports due to increased
consultations;
– many cases attributable to seasonal influenza until mid-May.
Infection rate for probable and confirmed cases highest in 5−24
year age group.
Hospitalisation rate highest in 0−4 year age group, followed by
5−24 year age group.
– Pregnant women, some of whom have delivered prematurely, have
received particular attention seem to at somewhat greater risk from
H1N1v than from seasonal influenza as already established.
Most deaths in 25−64 year age group in people with chronic
underlying disease.
Adults, especially 60 years and old, may have some degree of
preexisting cross-reactive antibody to the novel H1N1 flu virus.
Transmission persisting in several regions of the US, but not all
areas are affected.
24
Emerging themes in North
America, early June 2009 (2)
Containment with impossible with multiple introductions
and R0 1.4 to 1.6.
Initial focus on counting laboratory-confirmed cases has
changed to seasonal surveillance methods with:
– outpatient influenza-like illness, virological surveillance
(including susceptibility), pneumonia and influenza mortality,
pediatric mortality and geographic spread.
Stopped issuing reports of numbers of infected persons as these
were meaningless.
Serological experiments and epidemiology suggest 2008–
2009 seasonal A(H1N1) vaccine does not provide
protection.
Preparing for the autumn and winter when virus is
expected to return:
– communications: a pandemic may be 'mild' yet cause deaths;
– determining if and when to begin using vaccine;
– abandoned previous plans to use proactive school closures as
this was unworkable;
– looking at the southern hemisphere temperate countries.
25
Initial experience in Europe:
Planning assumptions
26
Revised European planning
assumptions for the pandemic – first
wave, pandemic (H1N1) 2009
Clinical attack rate 30%
These assumptions represent a reasonable worst case applying to one European country (the
United Kingdom) with data available as of July 2009. They should not be used for predictions.
28
Risk groups for the
A(H1N1) pandemic 2009
The following groups are considered more at risk of experiencing
severe disease than the general population should they become
infected with the pandemic A(H1N1) virus 2009:
People with chronic conditions in the following categories:
– chronic respiratory diseases;
– chronic cardiovascular diseases (though not isolated mild hypertension);
– chronic metabolic disorders (notably diabetes);
– chronic renal and hepatic diseases;
– persons with deficient immunity (congenital or acquired);
– chronic neurological or neuromuscular conditions; and
– any other condition that impairs a person’s immunity or prejudices their respiratory
(breathing) function, including severe or morbid obesity.
Note: These categories will be subject to amendment and development as more data become available. These are very
similar underlying conditions that serve as risk factors for seasonal influenza. What is especially different from seasonal
influenza is that the older age groups (over the age of 60 years) without underlying conditions are relatively unaffected by
the pandemic strain.
Pregnant women.
Young children (especially those under two years).
Sources:
ECDC Pandemic 2009 Risk Assessment. Available from: http://www.ecdc.europa.eu/en/Health_topics/novel_influenza_virus/2009_Outbreak
Finelli L. CDC Influenza Surveillance. Available from: http://www.cdc.gov/vaccines/recs/ACIP/downloads/mtg-slides-jun09/15-2-inf.pdf
Nicoll A et al. Eurosurveillance, Volume 13, Issue 43, 23 October 2008. Available from: http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=19018
Jamieson D et al. Lancet 2009; July 29, 2009 DOI:10.1016/S0140-6736(09)61304-0
CDC 2009 ACIP Meeting, 31 July 2009. Novel influenza A(H1N1) epidemiology update. Available from:
http://www.cdc.gov/vaccines/recs/ACIP/downloads/mtg-slides-jul09-flu/02-Flu-Fiore.pdf
CDC 2009 ACIP Meeting, 31 July 2009. Vaccine workgroup considerations. Available from:
http://www.cdc.gov/vaccines/recs/ACIP/downloads/mtg-slides-jul09-flu/11-Flu-Fiore.pdf
29
Measuring the severity of a
pandemic
30
There is an expectation that pandemics
should be graded by severity
But there are difficulties:
severity varies from country to country;
it can change over time;
some relevant information is not available initially;
key health information includes medical and scientific
information:
– epidemiological, clinical and virological characteristics.
There are also social and societal aspects:
– vulnerability of populations;
– capacity for response;
– available health care;
– communication; and
– the level of advance planning.
31
What is meant by 'mild' and 'severe'?
Not a simple scale
Death ratio. Expectation of an infected person dying (the
Case Fatality Ratio).
Number of people falling ill with respiratory illnesses
at one time — 'winter pressures'. Pressure on the health
services' ability to deal with these — very related to
preparedness and robustness.
Critical service functioning. Peak prevalence of people off
ill or caring for others.
Certain groups dying unexpectedly, e.g. children,
pregnant women, young healthy adults.
Public and media perception.
Conclusions. Not easy to come up with a single measure.
May be better to state what interventions/countermeasures
are useful and justifiable (and what are not).
http://www.who.int/csr/disease/swineflu/assess/disease_swineflu_assess_20090511/en/index.html and
http://www.who.int/wer/2009/wer8422.pdf 32
Arguments for and against just
undertaking mitigation and not
attempting delaying or containment
33
Policy dilemma – mitigating vs.
attempting delaying (containing)
pandemics?
Arguments for just mitigating and not attempting delaying
or containment:
Containment specifically not recommended by WHO in
Phases 5 and 6.
Was not attempted by the United States for this virus.
Delaying or containment cannot be demonstrated to
have worked — would have seemed to have worked in
1918 and 1968 without doing anything.
Very labour-intensive — major opportunity costs.
Will miss detecting sporadic transmissions.
Overwhelming numbers as other countries ‘light up’.
When you change tactic, major communication
challenge with stopping prophylaxis.
34
Policy dilemma – mitigating vs.
attempting delaying (containing)
pandemics?
Arguments for case-finding, contact tracing and
prophylaxis:
Countries are then seen to be doing something.
Recommended in one specific circumstance by
WHO (the rapid containment strategy).
There are some places it would work in Europe
(isolated communities).
It is what public health people do for other
infections.
Public may expect it.
35
Aims of community reduction of
influenza transmission —
mitigation
Delay and flatten epidemic peak.
Reduce peak burden on healthcare system and threat.
Somewhat reduce total number of cases.
Buy a little time.
No intervention
Daily
cases
With interventions