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Stereochemistry Of Organic
Compounds
3
3.1 CONCEPT OF ISOMERISM
Structural or
Constitutional Stereoisomerism
Isomerism
CH3CH2CH2CH2CH3
n-Pentane
CH3 CH3
CH3
H3C
CH3CH2CH2CH2OH CH CH2OH H3C C OH
H3C
n-Butyl alcohol CH3
(Straight chain) Isobutyl alcohol Tert-butyl alcohol
(Branched chain) (Branched chain)
II. Position Isomerism
These have same carbon skeleton but differ in
the position of attached atoms or groups or
in position of multiple (double or triple)
bonds.
OH
CH3CH2CH2OH CH3—CH—CH 3
Propan-1-ol (The OH group atC1) Propan-2-ol (The OH group at C2)
Cl Cl
Cl Cl
Cl Cl
o-Dichlorobenzene m-Dichlorobenzene p-Dichlorobenzene
1 4 3 4
H3C 2
CH3 H CH2 CH3
3 1 2
C C C C
H H H H
But-2-ene (Double bond at C 2) But-1-ene (Double bond at C 1)
4 3 2 1 4 3 2 1
CH3CH2C CH CH3 C C CH3
But-1-yne (Triple bond at C1) But-2-yne (Triple bond at C2)
III. Functional Isomerism
• These have same molecular formula but different
functional groups.
CH 3 CH 2OH CH 3 O CH 3
Ethanol Dimethyl ether
O O
CH3 C OH H C OCH3
Ethanoic acid Methyl methanoate
O O
and
CH 3 C CH3 CH 3C H2 C H
Propanone (Acetone) Propanal (Propionaldehyde)
CH2 CH CH CH2 or CH3 CH C CH2
But-1,3-diene (an alkene) But -1, 2-diene (an allene)
and
CH2OH OCH3 OH OH
CH3
or
CH3
Benzyl alcohol Anisole o-Cresol m-Cresol
(an alcohol) (an ether) (a phenol) (a phenol)
CH3
O OH
O OH
C C C C
CH2 OC2H5 H3C CH OC2H5
CH3
C C C C
H3C CH2 CH3 H3C CH CH3
Enol form (76%)
Keto form (24%)
Necessary and sufficient condition for a
compound to exhibit keto - enol tautomerism
O O
C H C
Compounds other than carbonyl derivatives
which also exhibit tautomerism
Nitromethane exists in the following equilibrium.
This type of tautomerism is called nitro-
acinitro tautomerism.
O OH
CH3 N CH2 N
O O
Nitro form Acinitro form
VI. Ring Chain Isomerism
• Open chain and cyclic compounds having
the same molecular formula are called ring -
chain isomers
CH3 C CH and
Propyne Cyclopropene
Double Bond Equivalents (DBE) or
Index of Hydrogen Deficiency (IHD)
• It is of great utility in solving structural
problems. It tells us about the number of
double bonds or rings present in the
molecule. DBE (or IHD) is calculated from the
expression:
n (v 2)
DBE = +1
2
• Here n = no. of different kinds of atoms present and
v = valency of each atom.
For exmaple,
• DBE (or IHD) for molecular formula C3H6O
3 (4 - 2) + 6 (1 - 2) + 1 (2-2)
= +1=0+1=1
2
• Thus molecules having molecular formula C3H6O
will have either one double bond or one ring.
OH O O
OH CH3
H2C==C—CH3 H3C—C—CH3
H H
H OH HO H
CH3 CH3
( -) - Lactic acid ( +) - Lactic acid
(Rotates the plane of polarized (Rotates the plane of polarized
light towards left hand side i.e. light towards right hand side i.e.
anticlockwise) clockwise)
b) Geometrical Isomerism
• Geometric isomers are the stereoisomers
which differ in their spatial geometry due to
restricted rotation across a double bond.
• These isomers are also called as cis-trans
isomers. For example, molecular formula
C2H2Cl2 corresponds to two geometric
isomers as follows:
H H H Cl
C C C C
Cl Cl Cl H
cis-1,2-Dichloroethene trans-1,2-Dichloroethene
II. Conformational Isomerism
• The stereoisomers which can be
interconverted rapidly at room temperature
without breaking a covalent bond are called
conformational isomers or conformers.
• Because such isomers can be readily
interconverted, they cannot be separated
under normal conditions.
• Two types of conformational isomers are:
a)Conformational isomers resulting from
rotation about single bond
b)Conformational isomers arising from amine
inversion
a) Conformational isomers resulting from
rotation about single bond
• Because the single bond in a molecule
rotates continuously, the compounds
containing single bonds have many
interconvertible conformational isomers.e.g,
'boat' and 'chair' forms of cyclohexane.
H H H
H H H
H H H
H
H H H H
H H
H H
H
H H H
H
Cyclohexane Cyclohexane
H (Chair form) (Boat form)
b) Conformational isomers arising from
amine inversion
• Nitrogen atom of amines has a pair of non-
bonding electrons which allow the molecule
to turn "inside out" rapidly at room
temperature. This is called amine inversion
or Walden inversion.
R3
R3 R1
R2
N R1 N N
R1 R3 R2
R2
Transition state
3.3 OPTICAL ACTIVITY
• Enantiomers are known to possess same
physical and chemical properties but they
differ in the way they interact with plane
polarised light.
• Substances which can rotate the plane of
polarised light are said to be optically active.
• Dextrorotatory (Latin: dextre means right)
and is indicated by (+) sign.
• Laevorotatory (Latin: laeves mean left) and
is indicated by (-) sign.
• Those substance which do not rotate the
plane of polarised light are called optically
inactive.
TYPES OF OPTICAL ACTIVITY
new older
Dextrorotatory (+)- d-
Levorotatory (-)- l-
SIDE
. END
VIEW
VIEW
polarized beam
A beam is a collection
of these rays.
NOT PLANE-POLARIZED
frequency ( ) Sine waves
are not aligned
= c in the same
plane.
c = speed of light unpolarized
beam
Optical Activity
angle of
rotation,
incident transmitted
polarized light (rotated)
light sample cell
(usually quartz)
0
0
0
0
0
plane is
polarizer analyzer
rotated
chemistry
nerd
rotate to null
• Angle of rotation ( is the angle
(degrees) by which the analyser is
rotated to get maximum intensity of
light. It depends upon:
• (i) Nature of the substance;
• (ii) Concentration of the solution in
g/ml;
• (iii) Length of the polarimeter tube;
• (iv) of the incident monochromatic
light (598nm).
• (v) Temperature of the sample.
Specific Rotation
• It is defined as the number of degrees of
rotation caused by a solution of 1.0 g of
compound per ml of solution taken in a
polarimeter tube 1.0 dm (10 cm) long at a
specific temperature and wavelength.
• The specific rotation is calculated from
observed angle of rotation, as below:
to
=
l× c
• Where [] = specific rotation; t0 = temperature of the
sample; = wave length of incident light (where
sodium D-line is used is replaced by D); =
observed angle of rotation; l = length of the
polarimeter tube in decimeters; C= concentration of
sample in g/ml of the solution.
Specific Rotation []D
This equation corrects
for differences in cell
[]Dt =
length and concentration.
cl Specific rotation calculated
in this way is a physical
property of an optically
active substance.
= observed rotation You always get the same
c = concentration ( g/mL ) value of []Dt
l = length of cell ( dm )
D = yellow light from sodium lamp
t = temperature ( Celsius )
SPECIFIC ROTATIONS OF BIOACTIVE COMPOUNDS
COMPOUND []D
cholesterol -31.5
cocaine -16
morphine -132
codeine -136
heroin -107
epinephrine -5.0
progesterone +172
testosterone +109
sucrose +66.5
-D-glucose +18.7
-D-glucose +112
oxacillin +201
Molecular Rotation [M]
• Molecular rotation which is preferred over specific
rotation which is given by the formula:
to
o
t × M
=
100
• Where M = molecular weight of the optically active
substance.
• Utility of specific/molecular rotation: Just like other
physical constants such as melting point, boiling point,
density, refractive index, etc., it is also a characteristic
property for establishing the identity of a given optically
active compound. It is an intensive property.
3.3.1Chirality - optical activity: discovery
• French chemist Louis Pasteur (1848) discovered
that crystalline optically inactive sodium
ammonium tartarate was a mixture of two types of
crystals which were mirror images of each other.
• Each type of crystals when dissolved in water was
optically active. The specific rotations of the two
solutions were exactly equal, but of opposite sign.
• In all other properties, the two substances were
identical.
• As the rotation differs for the two samples in
solution in which shapes of crystals disappear,
Pasteur laid the foundation of stereochemisty
when he proposed that like the two sets of
crystals, the molecules making up the crystals
were themselves mirror - images of each other and
the difference in rotation was due to 'molecular
dissymmetry'
PASTEUR’S DISCOVERY
2-
+
Na OOC CH CH COO NH4+
HOOC CH CH COOH
OH OH OH OH
mirror
images
• Similarly, alphabets R,F,J are chiral and A, M, O are
achiral.
R J F
Chiral objects
A A M M O O
(Achiral objects)
Chiral objects - human hand, gloves, shoes, etc.
Achiral objects - a sphere, a cube, a button, socks
without thumb, etc.
Chirality or molecular dissymmetry is the
necessary and sufficient condition for a molecule
to be optically active.
3.3.3 Molecular Chirality and Asymmetric Carbon
• Chirality in molecules is usually due to the
presence of an sp3 carbon atom with four
different groups attached to it. Such a carbon
atom is called a chiral carbon or a chirality
centre.
• The presence of a chirality centre usually
leads to molecular chirality. Such a molecule
has no plane of symmetry and exists as a
pair of enantiomers. Such a carbon atom is
sometimes also referred to as asymmetric
carbon atom.
A ball and stick model of a compound Cwxyz
• A derivative of methane, where w,x,y and z
are all different atoms or groups and a model
of its morror image.
X X
W W
Y C C Y
Z Z
Mirror
• We may twist and turn the above two
representations in any way we like so long
we do not break any bond, yet we find that
the two are not superimposable. Therefore,
they must represent two isomers, i.e., two
enantiomers.
Enantiomers
non-superimposable mirror images
(also called optical isomers)
W W
C C
X Y Y X
Z Z
C C
W Enantiomers W
C C
X Y Y X
Z Z
(+)-nno (-)-nno
dextrorotatory levorotatory
ALL OTHER PHYSICAL PROPERTIES ARE THE SAME
How to distinguish between enantiomers?
X X X
W W
Y C C Y
Y W
Z Z
Z Mirror
H OH HO H
CH2OH CH2OH
Mirror
(+) and () - Glyceraldehydes
CO2H CO2H
H OH HO H
CH3 CH3
Mirror
() and (+) - Lactic acids
TARTARIC
OH OH meso ACID
HOOC from fermentation
COOH of wine
H H
Enantiomers
OH OH OH OH
HOOC H H COOH
H COOH HOOC H
H OH
90o CHO
90o
HOH2C OH H
rotation rotation
CH2OH OH CHO
(+) () (+)
one exchange
of groups
H H
another exchange
HOH2C OH HO CH2OH
of groups
CHO CHO
(+) ()
COOH COOH
Away from
H C OH or H OH the veiwer
CH2OH CH2OH
(I) Towards the (I)
veiwer
Out of sight
three groups
emanating from
Visible circumfrance
H3C OH HO CH3
Br H CH3
CH3 CH3
Rear carbon
Rotation by H Br
CH3
H Br 180o
Br H Front carbon
Staggered H Br
CH3
Sawhorse Projection Eclipsed
Sawhorse Projection Fischer Projection
Conversion of Sawhorse to Newman to Fischer Projection
Rear H2N Cl
Ph
carbon
H2N Cl
Ph CH3 View through
Front
carbon the front carbon
Br OH
Br OH CH3
Staggered Staggered
Sawhorse Projection Newman Projection
Rotate the front carbon
along the central
bond by 180o
CH3
HO NH2
Br
H2N Cl Hold in vertical plane Cl
keeping front carbon as the
HO Br lowest
Front carbon H3C
Ph Ph
Eclipsed
Fischer Projection Newman Projection
Conversion of Fischer to Newman to Sawhorse Projection
Rear carbon CHO
H OH Cl
H
H OH Rotate front
carbon by 180o
H Cl CHO
CH2OH
CH OH
Front carbon 2 Eclipsed
Newman Projection
Fischer Projection
CH2OH
H OH
H OH
CHO View through
HOH2C
central bond
Cl H
CHO
Cl H Staggered
Staggered Sawhorse Newman Projection
Projection
Conversion of Fischer Projection into Flying Wedge
• The vertical bonds in the Fischer projection are
drawn in the plane of the paper using simple lines
(—) consequently horizontal bonds will project
above and below the plane.
COOH
H
When Br above the plane
CH3
COOH
Br
H Br
H3C
H
Conversion of Flying Wedge into Fischer Projection
• The molecule is rotated (in the vertical plane) in such
a way that the bonds shown in the plane of the paper
go away from the viewer and are vertical.
COOH
COOH
H
Rotate the model in vertical
CH3 H Br
plane so that C—COOH and C—CH3
Br
go away from the viewer CH3
3.5 ELEMENTS OF SYMMETRY
• Enatiomerism depends on whether a
molecule in not superimposable on its mirror
image. If it is superimposable, the molecule
is optically inactive otherwise is optically
active. The most convenient method of
inspecting superimposability is to determine
whether the molecule has any of the
following four elements of symmetry:
1. Plane of symmetry (s)
2. Centre of symmetry (i)
3. Simple or proper axis of symmetry (Cn)
4. Alternating or improper axis of symmetry (Sn)
1. Plane of symmetry (s)
• A plane of symmetry is defined as an imaginary
plane which divides a molecule in such a way that
one half is mirror image of the other half.
• A molecule with atleast a plane of symmetry can
be superimposed on its mirror image and is achiral.
A molecule that does not have a plane of symmetry
is usually chiral; it cannot be superimposed upon its
mirror image.
COOH
H OH
•A plan of symmetry Plane
may pass through of
atoms, between H OH symmetry
atoms or both.
COOH
meso-Tartaric acid
2. Centre of symmetry or inversion (i) or (Ci)
• A centre of symmetry (centre of inversion) is defined
as a point within the molecule such that if an atom is
joined to it by a straight line which if extrapolated to
an equal distance beyond it in opposite direction
meets an equivalent atom. In other words it is a point
at which all the straight lines joining identical points
in the molecule cross each other.
CH3 COOH
H H
Centre
H H of
symmetry 2,4-Dimethylcyclobutane
-1,3-dicarboxylic acid has
Ci
COOH CH3
CO NH H3C CO NH H
H3 C CH3
C C C C
H H H CH3
NH CO NH CO
cis (chiral) trans (achiral)
3. Simple or proper axis of symmetry (Cn)
• An imaginary line passing through the molecule in
such a way that when the molecule is rotated about it
by an angle of 360o/n, an arrangement
indistinguishable from the original is obtained. Such
an axis is called n-fold axis of symmetry. For example,
cis-1,3-dimethylcyclobutane has a two fold axis of
symmetry (C2) i.e. rotation by 180o gives
indistinguishable appearance.
H CH3 H CH3
H H H H H
H3C H3C H
Rotation
by 180o
H H H H
C2-Axis of
Symmetry
4. Alternating or improper axis of symmetry (Sn)
A
CH3 H CH3 H
4 1 2 1
H CH3 H CH3
H H3C H H3C
3 2 3 4
CH3 H CH3 H
B (a) Reflaction through
(a) mirror plane
Rotation perpendicular to
CH3 axis of rotation
by 90o H
3 4
CH3 H
H3C H
1,2,3,4-Tetramethyl-
2 1
cyclobutane has4S
H CH3
(b)
Asymmetry v/s Dissymmetry
• In general the term asymmetry is used for
those optically active compounds which
have none of the four elements of symmetry.
• In contrast the term dissymmetry is used for
all stereoisomeric compounds which are
capable of existing as pairs of non-
superimposable mirror images despite the
presence of some elements of symmetry.
• In other words the term dissymmetry is
applicable to all stereoisomers, which are
related to each other as non-superimposable
mirror images of each other, e.g. 2,3-
dibromobutane possesses a C2 axis of
symmetry in the molecule at right angle to
the plane of the paper.
Since structures I and II are indistinguishable, the molecule
has C2 axis of symmetry. But it is non-superimposable on
its mirror image so it is dissymmetric and not asymmetric
and exhibits optical activity.
1 2 3 4
CH 3 C CH 2CH 3
OH Chirality centre
2-Butanol
3.7 CHARACTERISTICS OF ENANTIOMERS
• Necessary and sufficient condition for
enantiomerism is that the molecule should
be chiral or dissymmetric i.e. the molecule
and its mirror image should be non-
superimposable, even if it may not have an
assymmetric carbon or stereocentre.
• In general it has been observed that
compounds having one or more chirality
centre show enantiomerism and therefore,
optically active. However, this statement
does not hold good for all such molecules,
e.g.
i) Compounds having chirality centre(s) but
not enantiomeric
• Meso-2,3-dibromobutane contains two
chirality centres (marked with *) but it does
not exhibit enantiomerism due to internal
compensation and hence is optically
inactive.
CH3 CH3
H * Br Br * H
Plane of
* * Symmetry
H Br Br H
CH3 CH3
Mirror
Meso - 2,3-dibromobutane (optically inactive)
ii) Compounds having no chirality centre but
are enantiomeric
• These molecules show chirality or dissymmetry and
hence enantiomerism. Examples of such compounds
are o-substitued biphenyls and allenes having even
number of double bonds.
NO2 F O2N
F
F O 2N NO2 F
Mirror
2,2'-Difluoro - 6,6'-dinitrobiphenyl (No chirality centre)
(Non-superimposable mirror images hence enantiomeric and optically active)
Allenes: Due
D to sp hybridization of central carbon which
forms two bonds perpendicular to each other and thus
the two groups attached to terminal carbon atoms are
also orthogonal. Due to this arrangement the molecule of
allene is devoid of symmetry and hence is chiral.
C2H5 H5 C2 CH3
H3C
C C C C C C
H5C2 CH3 H3C C2H5
Mirror
1,3-Diethyl-1,3-dimethylallene (No chirality centre)
(Non-superimposable mirror images, hence enantiomeric and optically active)
[]D = 0o
CH3 O
CH3CH2 C CH2 O C CH 3
H
(+ and ) Esters
(iii) The enantiomers have different chemical
properties towards optically active reagents.
• If we use an optically active reagent, the
reaction rates will be different. If we esterify
the two enantiomers of 2-methyl-1-butanol
with (-)-lactic acid, the influence exerted by
the reagent will not be identical due to the
different spatial disposition of the OH group
in the two enantiomers in relation to the
groups attached to the chirality centre of (-)-
lactic acid. Therefore, the rate of
esterification of (+)-2-methyl-1-butanol will be
different form that of (-)-2-methyl-1-butanol.
(iv) The enantiomers have different biological properties.
1. (+)-Glucose plays an important role in animal
metabolism and fermentation, but (-)-glucose
is not metabolized by animals, and
furthermore cannot be fermented by yeasts.
2. Penicillium glaucum, consumes only the (+)-
enantiomer when fed with a mixture of equal
quantities of (+)-and (-)-tartaric acids.
3. Hormonal activity of (-)-adrenaline is many
times more than that of its enantiomer.
3.8 COMPOUNDS WITH SEVERAL CHIRALITY
CENTRES
• If there are n chiral carbons, the compound will
exist in 2n optically active forms, provided chiral
atoms are not identically substituted.
• 2-Bromo-3-hydroxybutanedioic acid, HOOC-
CH(OH)-CH(Br)-COOH, in which the two chiral
carbon atoms are dissimilar, exists in 22=4
optically active forms.
• The two chiral carbon atoms of tartaric acid,
HOOC-CHOH-CHOH-COOH, on the other hand,
are identically substituted (similar) and hence
the total number of optically active isomers
cannot be predicted by using 2n formula.
Compounds with two Dissimilar Stereogenic
Centres (Chirality Centres) : Diastereomers
COOH COOH COOH COOH
HO H H OH HO H H OH
Br H H Br H Br Br H
COOH COOH COOH COOH
I Mirror II III Mirror IV
(A pair of enantiomers) (A pair of enantiomers)
H OH HO H H OH HO H
HO H H OH H OH HO H
H OH HO H H OH HO H
HO H H OH H OH HO H
H OH HO H H OH
Plane of
symmetry
HO H H OH H OH
HO
2 H H
H OH H OH OH
3 OH H OH Plane of
H HO H HO H
symmetry
4
H OH HO H H OH H OH
5
COOH COOH COOH COOH
I II III IV
3.9 PROCHIRALITY
• When replacement of one hydrogen atom at a time
gives an enantiomer, such a hydrogen atom is called
enantiotopic hydrogen. That enantiotopic hydrogen,
the replacement of which gives R-configuration is
called pro-R and the other which give S-
configuration is called pro-S
• The carbon atom to which the two hydrogen
atoms are attached is called prochirality centre and
the moelcule is called prochiral molecule.
Pro-R
Pro-S CH3 CH3 CH3
HS C HR Replacement of D or D H
H
HR or HS by D
Prochiral centre OH OH OH
Ethanol (R-isomer) (S-isomer)
3.10 RETENTION and INVERSION of CONFIGURATION
• Retention or inversion depends upon:
i) The side of the molecule from which the reagent attacks the
reactant.
ii) Manner of bond cleavage in the reaction i.e. whether the bond
between the substituent and chirality centre is broken or not.
CH3 CH3
SN2
HO H C Cl HO C H + Cl
(Inversion)
H5C2 C2H5
Walden inversion. (Inverted configuration)
CH3 CH3
-HCl
H C O H + Cl Ts H C O Ts
H3CH2C H3CH2C
Optically active Not broken so retention of 2-Butyl tosylate
2-Butanol configuration
3.11 RACEMIC MODIFICATION or RACEMIC MIXTURE
• An equimolar mixture of two enantiomers does
not possess optical activity and is called
racemic mixutre or racemic modification or
conglomerate.
• Loss of optical activity is due to cancellation of
rotation (external compensation).
• Prefixes such as (dl) or (±) or (RS) are used
before the name of the compound to specify that
it is racemic.
• The optical rotation as well as other physical
properties of the racemic mixture such as
melting point, boiling point, solubility in a given
solvent etc., are also different from those of
enantiomers.
RACEMIC MIXTURE
an equimolar (50/50) mixture of enantiomers
[]D = 0o
HO O
OH O
HO
C C
H C C
H3C O
O
H3C Resonance
(-)-Lactate ion stabilized
planar
OH HO O carbanion
O
H2O
H3C C C C C
O -OH H3C O
H
(+)-Lactate ion
HO H
2. Racemisation involving a carbocation (SN1 mechanism)
• Carbocations are planar and hence achiral.
Recombination of an anion can take place from
either side of the carbocation with equal ease
thereby leading to racemisation.
Cl
a
Ph Ph
b
H C Cl + SbCl5 (Liq. SO2) C
H CH3
H3C
Planar carbocation
(+) - - Chloroethylbenzene
a (front side attack) b (back side attack)
Ph Ph
H C Cl Cl C H
H3C CH3
(+) 50% (-) 50%
Racemic mixture
3. Racemisation involving Walden Inversion (SN2 mechanism)
• Any one enantiomer of 2-iodobutane can undergo
Walden inversion when treated with sodium iodide
to give 1:1 mixture of the two enantiomers
(racemate).
• Enantiomers having the halogen at chirality centre
can undergo racemization by SN2 mechanism. For
instance, a solution of (+) or (-) -2- iodobutane on
treatment with NaI in acetone produces (±)-2-
iodobutane.
CH3 CH3
Walden
I H C I I C H I
inversion
H5C2 C2H5
(One enantiomer) (Other enantiomer)
4. Racemisation involving rotation about C - C single bond
• Optical activity of biphenyls arises due to restricted
rotation. It is, therefore, reasonable to believe that if
the rings of such biphenyl derivatives become
planar their optical activity should be lost. In
agreement with this it has been found that a number
of optically active compounds can be racemised
under suitable conditions, e.g., heating which
overcomes the energy barrier between two
enantiomers.
(+) - Tartaric acid - () - cinchonidine () - Tartaric acid - () - cinchonidine
Dil.H2SO4 Dil.H2SO4
Examples
COOH COOH
COOH COOH
H OH HO H
H OH HO H
HO H H OH
CH3 CH3
COOH COOH
D-()-Lactic acid L-(+)-Lactic acid D-(+)-Tartaric acid L-()-Tartaric acid
COOH COOH
H NH2 H2N H
CH3 CH3
D-()-Alanine L(+)-Alanine
(ii) Sugar Convention
• Emil Fischer arbitrarily assigned D- and L-
configurations to (+) and (–)-glyceraldehydes,
respectively. He assigned D-configuration (OH on the
right) to (+)-glyceraldehyde and L-configuration (OH on
the left) to (–)-glyceraldehyde.
CHO CHO
H OH HO H
CH2OH CH2OH
D-(+)-Glyceraldehyde L-()-Glyceraldehyde
H OH H OH HO H
[O] Rotation
HO H HO H HO H
by180o
H OH H OH H OH
H OH H OH HO H
CH3H2C
CH2CH3
(-) 2-Butanol
The priorities
priori of the substituents as determined by CIP rules
are -OH is 1, CH3CH2- is 2, CH3 - is 3 and H is 4 i.e. -OH has
the highest priority and H has the lowest priority.
3 1
(Third Highest)H3C OH (Highest)
Our eye moves in
clockwise direction,
so the absolute
2
CH2CH3
configuration
conf of (–)-
(Second Highest) 2-butanol is R.
Priority sequence order of various groups
Lowest : Non-bonding electrons (At. No. = 0)
-H, -D, -CH3, -CH2CH3, -CH2(CH2)nCH3,
-CH2CH=CH2, -CH2-CCH, -CH2-C6H5,
-CH(CH3)2, -CH=CH2, -C(CH3)3 -CCH, -C6H5,
-CH2OH, -CHO, -COR, -CONH2, -COOH,
-COOR, -NH2, -NHCH3, -N(CH3)2, -NO, -NO2,
-OH, -OCH3, -OC6H5, -OCOR, -F, -SH, -SR,
-SOR, -Cl, -Br, -I Highest.
Some examples:
2 2
COOH COOH
H 3 H
3
CH3 H3C
HO OH
1
1
Sequence Rules
• Sequence Rule I : If four atoms/groups
attached to the chirality centre are all
different, the atom with highest atomic
number is given the highest priority.
However if two isotopes of the same element
are attached to the chirality centre, the atom
with higher mass number is given higher
priority.
2 4
Br H
3 2 1
4 H3C Br
F Cl
D3
I1
Sequene Rule 2
• If on basis of the sequence rule 1 the priorities
of two groups cannot be decided, it can be
determined by a similar comparison of the
next atoms, in both groups. If by doing so the
priority cannot be decided, one goes to ‘next’
atom and continues moving outwards
commencing with the chiral atom till one
reaches the first point of difference.
• (Note : The decision about priority should
be made at the very first point of difference,
and should not be effected from the
consideration of substituents further along
the chain.)
Sequence Rule 3
• In case the group attached to the chiral carbon
contains a double bond or a triple bond, both atoms
joined by multiple bonds are considered to be
duplicated (in case of a double bond) and triplicated
(in case of a triple bond).
C X
C X is considered to be equal to
X C
X C
X C
C
is consisered equal to HC C
CH
C
Very Good Mnemonic: Very good or Vertical good rule
• Fix up priorities of the groups and move your
eye from 123 ignoring 4. Now, if
(i)Group of lowest priority (4) is on the vertical
line (whether on top or bottom), and the
sequence 123 is in clockwise direction the
configuration is R and if it is in counter
clockwise direction the configuration is S.
(ii)Group of lowest priority (4) is on the horizontal
line assign the configuration which is opposite
to what you see i.e.; if the movement of the eye
from 123 is in clockwise direction, assign
S-configuration and if it moves in anticlockwise
direction assign R- configuration.
Lowest priority 4 on vertical line
3 2
4
F COOH
H 2 1
Cl Br 3 1
1 2 H3C OH
Br Cl
H4 4
F3
H
R-configuration S-configuration
R-S Nomenclature of Compounds having more
than one Chiral Carbon
HO H HO H H OH
HO H H OH HO H
Overlap of -orbitals
Rotation by not possible as they
90o are perpendicular to
each other.
H H H COOH
C C C C
H5C6 COOH H5C6 H
Cis-Cinnamic acid Trans-Cinnamic acid
Necessary and Sufficient Condition for
Geometric Isomerism
• Geometrical isomerism will not be possible if one of
the unsaturated carbon atoms is bonded to two
identical groups.
• No two stereoisomers are possible for CH3HC=CH2,
(CH3)2C=CH2 and Cl2C=CHCl.
• Examples of compounds existing in two stereo-
isomeric forms are:
H H H COOH
C C C C
H5C6 COOH H5C6 H
Cis-Cinnamic acid Trans-Cinnamic acid
H H H CH3
C C C C
H3C H2C CH3 H3C H2C H
Cis-Pent-2-ene Trans-Pent-2-ene
Determination of the Configuration of the
Geometric Isomers
I. Physical methods
(a) Melting points and boiling points: Trans isomer
has a higher m. p. due to symmetrical packing.
Cis isomer has a higher b. p. due to higher dipole
moment which cause stronger attractive forces.
H H H CH3
C C C C
H3C CH3 H3C H
b.p. 277K b.p. 274K
H H HOOC H
C C C C
HOOC COOH H COOH
m.p. 403K m.p. 575K
(b) Solubility: Cis-isomers have higher solubilities.
Maleic acid 79.0g/100ml at 293K
Fumaric acid 0.7g/100ml at 293K
(c) Dipole moment : In general, cis isomers have
the greater dipole moment.
H H H CH3
C C C C
H3C CH3 H3C H
= 0.4 D =0
H H H Cl
C C C C
Cl Cl Cl H
=0
= 1.85 D
(d) Spectroscopic data :
• IR: Trans isomer is readily identified by the
appearance of a characteristic band near 970-
960 cm-1. No such band is observed in the
spectrum of the cis isomer.
• NMR: The protons in the two isomers have
different coupling constants e.g. trans – vinyl
protons have a larger value of the coupling
constant than the cis-isomer, e.g. cis- and trans-
cinnamic acids.
H H H CO2H
C C C C
C6H5 CO2H C 6H 5 H
Hydrolysis
H CO2H
C
C
H CO2H
Maleic acid
It is, therefore, reasonable to conclude that maleic acid is
the cis isomer and fumaric acid is the trans –isomer. The
latter forms the anhydride via the formation of maleic
acid at high temperature which involves rupture of -
bond and rotation of the acid groups followed by
reformation of the -bond and loss of water.
H CO2H H CO2H H CO2H
C
C
Rotation
C
C C C
HO2C H HO2C H H CO2H
Diradical Diradical
Fumaric acid
H CO H CO2H
C -H2O C
O
C C
H CO H CO2H
Maleic anhydride Maleic acid
• (ii) Ortho-aminocinnamic acids: The Ba-salt of an
isomer of ortho-aminocinnamic acid on treatment
with CO2 at room temperature gives carbostyril. This
shows that the carboxyl group and the substituted
phenyl group must be cis in this isomer. On the
other hand, the Ba-salt of the other isomer of ortho-
aminocinnamic acid does not give carbostyril under
the same condition and, therefore, it must have the
trans configuration.
H H CO2 Ba/2
H
C C C C
×
CO2 Ba/2 H
CO2 N
NH2 O NH2
Cis H Trans
Carbostyril
c) Method of chemical correlation
• Suppose configuration of a geometric isomer, say A
is known. Let A be converted under mild conditions
to a geometric isomer A', of another compound.
Since under mild conditions interconversion of the
geometric isomers will not take place, therfore, the
configuration of A' will be the same as that of A.
H H H H
C C 1. HNO2 C C
CO2 Ba/2 2. H3PO2 CO2H
C or Os O4 H OH
H COOH
COOH
Maleic acid meso-Tartaric acid
COOH COOH
H COOH
C aq. KMnO4 HO H H OH
+
C or Os O4 H OH H
HO
HOOC H
COOH COOH
Fumaric acid (+) - Tartaric acid () - Tartaric acid
(50%) (50%)
Racemic mixture
ii) Addition of bromine to double bond:
Racemic mixture
CH3
H3C H
C Br2 / CCl4 H Br
C H Br
H CH3
Trans-But-2-ene CH3
Meso-2,3-Dibromobutane
E and Z System of Nomenclature
• Consider a molecule in which the two carbon atoms
of a double bond are attached with four different
halogens.
Br F
C C
I Cl
• When we say that Br and CI are trans to each
other we can also say with equal degree of
confidence that I and CI are cis to each other. It is
thus difficult to name such a substance either the cis
or the trans isomer. To eliminate this confusion, a
more general and easy system for designating
configuration about a double bond has been
adopted. This method, which is called the E and Z
system, is based on a priority system originally
developed by Cahn, Ingold and Prelog for use with
optically active substance
1 2 1 1
C C C C
2 1 2 2
E Z
2 Br 2 Br
F 2 Cl 1
C C C C
1 I Cl 1 1 I F 2
Z-1-Bromo-2-chloro- E-1-Bromo-2-chloro-
2-fluoro-1-iodoethene 2-fluoro-1-iodoethene
1 H3C 1 H3C H 2
CH3 1
C C C C
2 H H 2 2 H CH3 1
Z-2-Butene E-2-Butene
C H C H H C H C
H H
C C C H C H
C C C C
H Y Y H H Y Y H
Z,E, or cis-trans Z,Z, or cis-cis E,Z or trans-cis E,E or trans-trans
N N
or N N
OH HO OH HO
I II I II
Nomenclature of Oximes
• The prefixes syn and anti are used in
different context for aldoximes and
ketoximes.
H OH H
• Aldoximes C N C N
H 5C 6 H5C6 OH
I II
syn-Benzaldoxime anti-Benzaldoxime
OH
• Ketoximes H3C
C N
H3C
C N
H5C2 H5C2 OH
anti-Ethylmethylketoxime syn-Ethylmethylketoxime
As in the case of cis-trans isomerism, this
nomenclature is ambiguous and often creates
confusion. To avoid this, the system of E-Z
nomenclature has been adopted. For fixing
priority the lone pair of electrons on nitrogen is taken
as group of lowest priority. Some examples are given
below
N N N N
(2) OH (1) (1) HO (2) OH HO
E-Methylphenylketoxime Z-Methylphenylketoxime E-Acetaldoxime Z-Acetaldoxime
Determination of Configuration of Oximes
• a) Aldoximes: The acetyl derivative of one isomer
regenerated the original oxime whereas that of the
other isomer eliminated acetic acid by E2
mechanism to form aryl cyanide.
Ar H Ar H Ar H
C Ac2O C Aq. Na2CO3 C
(Hydrolysis)
N N N
OAc OH
OH
E or syn - Oxime Original oxime
Ar H Ar H Ar
|
C Ac2O C Aq. Na2CO3 C
+ Acetic
N N
Elimination
N acid
HO AcO
Z or anti -Oxime Aryl cyanide
b) Ketoximes
• The configuration of the geometric isomers of the
unsymmetrical ketoximes are determined by
Beckmann rearrangement which consists in treating
ketoxime with acidic reagents such as PCI5, H3PO4,
P2O5, etc. when the oxime isomerizes to a
substituted amide by migration of the group (R1 or
R2) which is anti to the hydroxyl group.
R1
C N R2 CO NHR1 R2COOH + R1NH2
R2 OH
Vertical line
1,2-Dimethylcyclohexane
Sometimes, a broken wedge is used to indicate a group
below the plane of the ring, and a solid line represent a
group above the plane.
bond axis
H H
H
H H
H
H H H H H
H
I II
Eclipsed conformation Staggered conformation
Eclipsed
Staggered
R e la t iv e E n e r g y , k J m o l -1
15
I I I I
Eclipsed conformation
10
5
II II II Staggered conformation
H H
H H H H H H H3C H
I H III
Fully Eclipsed II Partially Eclipsed
( = 0o) Gauche ( = 0o)
( = 120o)
H3C
H H H H H H H
CH3 V H
IV Partially Eclipsed VI
Anti or Trans ( = 180o) Gauche ( = 300o)
( = 240o)
10 I = Fully Eclipsed
III and V = Partially Eclipsed
16
II II and VI = Gauche
5 VI
IV = Anti-conformation
4.0 IV
H H
H H H H Br H H H H H
H
Fully Eclipsed Br
Partially Eclipsed Gauche Anti
H H
H H H H HO H H H H H
H OH
Fully Eclipsed Partially Eclipsed Gauche Anti
I II
H e
a H
H e H
e
a H eH
H a
a H H e e
H
a
a H
H
Chair conformations of cyclohexane with axial and equatorial bonds
H (fp) (fp) H
4 1
H H
3 2
H
H H H
H5 6 H
H H Twist chair
Twist Boat
Boat
H H
4 1
H H 1
4 3 6
3 2 H
5 2
H
Ha H
5
H 6 Hb Ha
Hb
Twist boat
Boat
41.9 b
d
30.6
-1
E kJ m ol
22.6
c
a
Fig. 3.10 Potential energy of cyclohexane, a, chair; b, twist chair;
c twist boat; d, boat.
Cyclohexane Derivatives
• In methylcyclohexane, the axial conformer will have
two more n-butane skew interactions (7.54 kJ mol-1)
whereas in the equatorial conformer no additional
interaction or torsional strain is introduced since the
two new n-butane segments in it are both fully
staggered (anti).
2 H H
4 3 H 6 H
1
H
1 5
6 H H
CH3 3
5
H CH3
CH3 H
H CH3
H H3C
B H3C CH3
A
CH3
It is clear from the above considerations that the
axial bonds experience non-bonded interactions
with other axial bonds at 3-and 5-positions
whereas the equatorial bonds are free from such
steric interactions, i.e. axially bound groups will
experience more steric crowding than the
equatorially bound groups.
This explains why in most of the cases the
equatorially bound groups in cyclohexane
derivatives are more reactive than the axially
bound ones. E.g. equatorially bound hydroxyl
groups are more easily esterified than the axial
ones. Similarly, the equatorial acetoxy group
undergoes hydrolysis faster than the axial group.
3.15 Difference between conformation and configuration
• Conformations is used for various spatial
isomers which can be easily inter-converted.
H Cl Cl C6H5 H5C6 H
Rotate Rotate
through 120o through 120o
Cl H Cl H Cl H
C6H5 H Cl
I II III
(+ or -) form
C6H5 C6H5 C6H5
Cl C6H5 H Cl H5C6 H
Rotate Rotate
through 120o through 120o
H Cl H Cl H Cl
H C6H5 Cl
IV V VI
How many asymmetric carbon atoms are created
during the complete reduction of benzil (PhCOCOPh)
with LiAIH4? Also write the number of possible
stereoisomers of the product.
O O OH OH
Ans.
LiAIH4
Ph C C Ph Ph * C C* Ph
1 2
Benzil H H
1,2-Diphenylethane-1,2-diol
As 1,2-diphenylethane-1,2-diol has two similar asymmetric
carbons (cf. tartaric acid) it exists as three steroisomers.
Ph Ph Ph
H OH HO H H OH
HO H H OH H OH
Ph Ph Ph
I II III
Enantiomers meso-form